mRNA_E_fasciculatus_S2_contig8144.16299.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2H2 (zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI) HSP 1 Score: 308 bits (789), Expect = 1.280e-95 Identity = 249/310 (80.32%), Postives = 258/310 (83.23%), Query Frame = 3
Query: 96 MSRPPTMSQLLKRAGLAKRPRPAGRGVDATPSIANQSNKKRSRVDGGSRQHSSQEXXXXXXXXXXXXXXXSRNENGASAKDVAVDDQIAALERELKGTDGSSSDADSXXXXXXXXXXXXXXXXXXXSRGAGRKRGRVEKLVSPLEAEKIEPLPAHLLPRAGCGVHKDKXXXXXXXXXXXXXXXXXVPGPSQGLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLHVEAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGGRGGSESEGSSNGYSGRENG 1025
MS PPTMSQLLKRAGLAKRPRPAGRGVDATPS A+QS +KR RVD XXXXXXXXXXXXXX R+ENG SAKDVAVDDQIAALERELKG + SSSDA+ XXXXXXXXXXXXX RGAGR+RGRV KLVSPLE EKIEPLPAHLLPR GCGVHKDK XXXXX +PGPSQGLDSAVKEL+ NYEARSSERVPFYCRVCKFQGDSLEALEKHK EPLHV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGG GG SE S+NGYSGRENG
Sbjct: 1 MSGPPTMSQLLKRAGLAKRPRPAGRGVDATPSTASQSKRKRPRVDXXXXXXXX---XXXXXXXXXXXXXXGRSENGTSAKDVAVDDQIAALERELKGANDSSSDAEXXXXXXXXXXXXXX-------RGAGRERGRVAKLVSPLEVEKIEPLPAHLLPRPGCGVHKDKKXXXXXPSAAVGTTA--LPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGGWGGPGSERSANGYSGRENG 298
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE) HSP 1 Score: 306 bits (785), Expect = 4.880e-95 Identity = 263/369 (71.27%), Postives = 268/369 (72.63%), Query Frame = 3
Query: 96 MSRPPTMSQLLKRAGLAKRPRPAGRGVDATPSIANQSNKKRSRVDGGSRQHSSQEXXXXXXXXXXXXXXXSRNENGASAKDVAVDDQIAALERELKGTDGSSSDADSXXXXXXXXXXXXXXXXXXXSRGAGRKRGRVEKLVSPLEAEKIEPLPAHLLPRAGCGVHKDKXXXXXXXXXXXXXXXXXVPGPSQGLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLHVEAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGGRGGSESEGSSNGYSGRENGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGDPSRXXXXXXXXPGRGYERDR 1202
M RPPTMSQLLKRAGLAKR RPAGRGVDATPS ANQSN KR RVDG XXXXXXXXXXXXXXSR+ENGASAKDV VDDQIAALERELKG D SSSDA+S XXXXXXXXXXXXXXX +RGR KLVSPLEAEKIEPLPAHLLPR GCGVHKD +PGPSQGLDSAVKEL+ NYEARSSERVPFYCRVCKFQGDSLEALEKHK EPLHV XXXXXXXXXXXXXXXXXXXXXXXXXX LEKLQS MSRQGKWVPGGRGG SEGS NGYSGRENG XXXX PSR XXXXXXPGRGYE DR
Sbjct: 1 MFRPPTMSQLLKRAGLAKRSRPAGRGVDATPSPANQSNNKRQRVDGXXXXX-----XXXXXXXXXXXXXXSRSENGASAKDVTVDDQIAALERELKGADVSSSDAESSISSXXXXXXXXXXXXXXX------ERGRATKLVSPLEAEKIEPLPAHLLPRPGCGVHKDNKKKKKPSAAVGTTA---LPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAHLEKLQSMMSRQGKWVPGGRGGPGSEGSLNGYSGRENGGDCWRGSGARGGWAVGRGRGNDGMRGGGNDGXXXXXX--PSRGRXXXXXXPGRGYENDR 353
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2H2-type (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.770e-11 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 3
Query: 669 GLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLHVE 815
GL+ AV EL+ NYEA+S+ER+P+YCRVCKFQG S+E L H+ LH E
Sbjct: 2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTE 50
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2h2 (zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC) HSP 1 Score: 62.4 bits (150), Expect = 1.780e-8 Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3
Query: 669 GLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLH 809
GL V EL+ NY+ SSER PFYCR+C+FQG SLE L HK LH
Sbjct: 2 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 48
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2h2 (zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.180e-8 Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3
Query: 669 GLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLH 809
GL V EL+ NY+ SSER PFYCR+C+FQG SLE L HK LH
Sbjct: 33 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 79
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.950e-7 Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3
Query: 669 GLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLH 809
GL V EL+ NY+ SSER PFYCR+C+FQG SLE L HK LH
Sbjct: 168 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 214
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRV3_PHATC) HSP 1 Score: 61.6 bits (148), Expect = 9.720e-7 Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 3
Query: 516 VSPLEAEKIEPLPAHLLP----RAGCGVHKDKXXXXXXXXXXXXXXXXXVPGPSQGLDSAVKELMENYEARSSERVPFYCRVCKFQGDSLEALEKHKTEPLHVEAAK 824
+S ++ ++IEPLP++LLP R+ G+ + V S GL++AVKE+++ Y RSSER+PFYCRVC Q ++ HK H A +
Sbjct: 91 LSSVQKDRIEPLPSNLLPSNRKRSLKGIDRVNASERDDADQSNKKKSKLV---SSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQMSDEDSFTAHKETEFHTTAVE 194 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8144.16299.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8144.16299.1 >prot_E_fasciculatus_S2_contig8144.16299.1 ID=prot_E_fasciculatus_S2_contig8144.16299.1|Name=mRNA_E_fasciculatus_S2_contig8144.16299.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=370bp MSRPPTMSQLLKRAGLAKRPRPAGRGVDATPSIANQSNKKRSRVDGGSRQback to top mRNA from alignment at E_fasciculatus_S2_contig8144:1673..5177+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8144.16299.1 ID=mRNA_E_fasciculatus_S2_contig8144.16299.1|Name=mRNA_E_fasciculatus_S2_contig8144.16299.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3505bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8144:1673..5177+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8144:1673..5177+ >mRNA_E_fasciculatus_S2_contig8144.16299.1 ID=mRNA_E_fasciculatus_S2_contig8144.16299.1|Name=mRNA_E_fasciculatus_S2_contig8144.16299.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1110bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8144:1673..5177+ (Ectocarpus fasciculatus EfasUO2)back to top |