mRNA_E_fasciculatus_S2_contig814.16295.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig814.16295.1
Unique Name	mRNA_E_fasciculatus_S2_contig814.16295.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig814.16295.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY1_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 1.010e-156
Identity = 237/260 (91.15%), Postives = 245/260 (94.23%), Query Frame = 1

Query:    1 RITIEVAVMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAVWHFVGQGAFIRLVAASGRVISLNVLEANGILLGLSHLGNGIAGSRMRRVVGATGAAAVAGAAATTEAHAYQLRGFFSRTNGIFGERPVLSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAESANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMVGDPICGSLLQKLLDPTCVMLKGRGHFYDAYLACVGCLAN 780
            RITIEVA+MWYCHALPHGLGAGRPLRGNFGTGKAGDLLGA+WHF+GQG FIRLVAASGRV+SLNVLEANGILLGLSHLGNG+AGSRMRRVVGAT            EAHAYQLRGFFSRTNGIFGERP+LSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAA+SANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCM GDPICGSLLQKLLDPTCVMLKGRGHFYDAY+ACV CLAN
Sbjct:  310 RITIEVAIMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGTFIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGATAXXXXXXXXXXXEAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN 569

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BLAST of mRNA_E_fasciculatus_S2_contig814.16295.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF00_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.050e-65
Identity = 129/252 (51.19%), Postives = 160/252 (63.49%), Query Frame = 1

Query:    1 RITIEVAVMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAVWHFVGQGAFIRLVAASGRVISLNVLEANGILLGLSHLGNGIAGSRMRRVVGATGAAAVAGAAATTEAHAYQLRGFFSRTNGIFGERPVLSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAESANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMVGDPICGSLLQKLLDPTCVMLKGRGHFYDAYL 756
            R+T+EVA++ Y H LP GLG    LR +    +   L GA  H+ GQ      VAA+ R + LN+ EAN +LLG SH+GN  AGSR+  +    G         + +A  YQLRGFF RT G+F  R VLS+PFD  DT+L  QGILSATERE+      +  AFR +A    + LDAHSLG +GARNL GMG +AA VR+F RP +SLGWT   +++CMVGDPICGS L KLLDPTC +L G GH Y  YL
Sbjct:  509 RVTVEVAILRYLHCLPCGLGVAAELREHTCARQLQPLAGAALHYAGQRGCAVAVAAAARRVRLNLFEANALLLGASHVGNACAGSRLWCLDLGGG---------SDDAVGYQLRGFFCRTRGVFAARRVLSLPFDCVDTVLGCQGILSATERELACTTSAVGEAFRAWAGAPLSVLDAHSLGTLGARNLKGMGLVAAPVRLFARPFMSLGWTHGTSSICMVGDPICGSFLAKLLDPTCCLLPGSGHIYSKYL 751

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig814.16295.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTN3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.410e-14
Identity = 65/161 (40.37%), Postives = 81/161 (50.31%), Query Frame = 1

Query:  214 LLGLSHLGNGIAGSRMRRVVGATGAAAVAGAAATTEAHAYQLRGFFSRTNGIFGER--------------PVLSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAESANTLDAHSLGAVGARNLMGMGFIAA---RVRMFGRPALSLGWTEKA 645
            LL  S +GN   G R+RR   ATG               ++LRGFF R  GI  E                VLS+PFD AD LL LQGILSATE +V++    LA   R    E A  + AHSLGA+GARNL   G +A    R+ +  +P +S+GW   A
Sbjct:    2 LLATSFVGNLCVGGRLRR--DATG-------------EHFELRGFFCRLRGICDEAFWAPVLGPASTCIAAVLSLPFDVADLLLNLQGILSATELDVLRGGSQLARDLRAGGGEEAVHVYAHSLGALGARNLATAGALAGENVRLWLLAQPWISVGWLAAA 147

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig814.16295.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig814.16295.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	1.010e-156	91.15	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.050e-65	51.19	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Hypothetical	5.410e-14	40.37	protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig814	contig	E_fasciculatus_S2_contig814:22364..26851 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	2027
Hectar predicted targeting category	other localisation
Exons	5
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-14_001490.1
Cds size	759

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig814.16295.1	prot_E_fasciculatus_S2_contig814.16295.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig814 23608..26827 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842475.9085748-UTR-E_fasciculatus_S2_contig814:22363..23607	1696842475.9085748-UTR-E_fasciculatus_S2_contig814:22363..23607	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig814 22364..23607 -
1696842475.976707-UTR-E_fasciculatus_S2_contig814:26827..26851	1696842475.976707-UTR-E_fasciculatus_S2_contig814:26827..26851	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig814 26828..26851 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842475.92088-CDS-E_fasciculatus_S2_contig814:23607..23730	1696842475.92088-CDS-E_fasciculatus_S2_contig814:23607..23730	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig814 23608..23730 -
1696842475.9307637-CDS-E_fasciculatus_S2_contig814:24195..24423	1696842475.9307637-CDS-E_fasciculatus_S2_contig814:24195..24423	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig814 24196..24423 -
1696842475.9401524-CDS-E_fasciculatus_S2_contig814:25089..25200	1696842475.9401524-CDS-E_fasciculatus_S2_contig814:25089..25200	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig814 25090..25200 -
1696842475.9530857-CDS-E_fasciculatus_S2_contig814:26128..26350	1696842475.9530857-CDS-E_fasciculatus_S2_contig814:26128..26350	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig814 26129..26350 -
1696842475.9653556-CDS-E_fasciculatus_S2_contig814:26752..26827	1696842475.9653556-CDS-E_fasciculatus_S2_contig814:26752..26827	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig814 26753..26827 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig814:22364..26851-
coding sequence from alignment at E_fasciculatus_S2_contig814:22364..26851-

protein sequence of mRNA_E_fasciculatus_S2_contig814.16295.1

>prot_E_fasciculatus_S2_contig814.16295.1 ID=prot_E_fasciculatus_S2_contig814.16295.1|Name=mRNA_E_fasciculatus_S2_contig814.16295.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp
MWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAVWHFVGQGAFIRLVAASG
RVISLNVLEANGILLGLSHLGNGIAGSRMRRVVGATGAAAVAGAAATTEA
HAYQLRGFFSRTNGIFGERPVLSMPFDTADTLLALQGILSATEREVVQKN
GVLASAFRDFAAESANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALS
LGWTEKATNMCMVGDPICGSLLQKLLDPTCVMLKGRGHFYDAYLACVGCL
AN*

mRNA from alignment at E_fasciculatus_S2_contig814:22364..26851-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig814.16295.1 ID=mRNA_E_fasciculatus_S2_contig814.16295.1|Name=mRNA_E_fasciculatus_S2_contig814.16295.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4488bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:22364..26851- (Ectocarpus fasciculatus EfasUO2)
AGGATAACGATCGAAGTCGCCGTTATGTGGTACTGCCACGCACTGCCGCA
CGGACTAGGTGCGGGGCGACCGCTCCGAGGGAACTTCGGGACGGGCAAGG
TACTACGGCCTCAATCACAACGCAAAGCCAGGGGGGGGGGGGGGGGTGTA
CTCATAGCCGTGCTGCCGTAGTCGTTAGACCATTGATCTCGCATCCCTAC
AAAGCCGGGACGGAGCACGCCGGGTTCTCACCGTCTCCGGCTCTCACATC
ACCAAGCGCGAAGCGCCGTGAGGTATTTGGCGAGTCACAAGTCGCATGGA
GGGTGCACTGCATGGTGCTAAGGGTGTCGGCATCTTGTGCTTACTTCCTT
ACGGACATGGGGGGGGGGGGGTAAGTTGGATCTCCAGCGTCCGTTCTTGA
TGCTGCTCCTCCGGCCTTCCTGTCTTCCCTTCGTTTGCACGCGCACTCTC
TCACTCCCCAACCCTCCGTGTGTCATATCACGGTCGGCGTTCAAACACCA
GGCCGGGGATTTGCTAGGAGCGGTGTGGCATTTCGTGGGGCAGGGTGCCT
TCATCCGGCTCGTGGCCGCGTCGGGCCGGGTCATCTCTTTGAACGTGCTG
GAGGCGAACGGGATCCTGCTGGGCCTCAGCCACCTCGGCAACGGTATTGC
CGGCTCCCGGATGAGGCGTGTTGTCGGCGCCACGGGGGCGGCGGCGGTGG
CGGGGGCGGCGGCGACGACAGAGGTGAGAAGAAGCGTTTGCCGCCATGCC
TGCGTGTGTGCGTGCTTATCTCGAGGCGCGTGCACCGCGGGTCAGATTGG
TGTCGTCGCGGCACGCGACTGAAACTCGACAAAAAAAGTGGTGTCCCGCA
CCATCGGTCATTGCGTGGTAGCAGACGCCACGTGTGGCGGTCTTGCGACG
GCGATGAGCAACGTGTGCGTACACCTGTGTGTGCGTGTTTTCTTTGTGTA
GCATCGACCGCACCAACCTGCTGATCATTGATAACTCGTCAGTCTTTGCC
ATGGGACAAGAAGAACGCGTTTTTTTTTCTTGTTGGCGGACTTCCCCATC
AGGGGGGGCTATGGAAGGAGCTTGGACGACATAATCCACAGTCTCTGGAT
TCAGAGCACTGTTTGTTTTGGGTTCCATCTCATCTTTGGGCGTACCTTTG
ACGCACCAACCGGGGTCACACACAATAAACTCCGTATTTCTCCAGCGGCG
CTTGCCTTCGATTTCGTGAAACGAAAAAAAAAGAACCACATCTATTCGGT
AGCACTCCTGCTGCGGTGTTTAACTCCTGTGCTAGCATCAATACCTACAG
TTGAACTGTGCGTGTGCGCGCGCGTAACTTTGACGGGTGTTAGGTTCATC
TAGGGTAGGGAGGCGTCAGGTACGACACCGAGACGGGGAAACTGAACTGT
TTTCCTTCAGTCTGTAGGACGTAAACCAAGTCTCGTTAGCTGTCGGCCTT
CACTGAAAAGAAGCAATCCCCCTTGCAGTCTCGTTTCTTCAAACGATTTG
GCCTAACCGGACGCAAGCGGGAGGTAGTTCATGTCGAGATTTCTCGCCCA
TCAAAGAGGTCGACGATGTGGTTATCTCGTGATAGCTGCGGAAGTAAGTT
GGCGATATTTTTCCCTGCCTTCCCGCCCGCCCCTGTCCGCCATCGAACCA
GGCGCACGCCTATCAACTGCGCGGGTTCTTCTCCCGGACGAACGGGATAT
TCGGAGAGAGGCCCGTCCTTTCCATGCCGTTCGACACCGCCGATACGTTG
TTGGCCCTCCAGGTATTTAGGTGTAAAAACGATTTGTGGCTCGACGCCGT
TTGGCCAAACAAGCCTGTATTTCTAGTGAACCACTTTTTTCGAGTCTAGA
GCAACCAGGCTCTCTTGGCCGCACAGTTGGAACCGACGGACTTGTGGTCA
CGTAGACAAGCCGCTTGCAAGTTTGAGGCCACCAGGCCTCTTGTTGTCAA
CAACCGCCAGTTTTGTTTGCAGAGCTGTGCGCCTTCGCCGCCTTCTGCCT
TACCCTTGAGACCGAGACGTCAACGACGAGGTCTTGTTGTTGGATGTTGT
GTCAAGACGAGCGTCGTGTAAGAGGTACGGTAGACGTTTGAAACTAGCCA
GAACCCCAGATGATGTCTTCCACTCGCAAGCCCGACGGCTATTTTCGCCC
TGGCGTCAGCTACCGGTCCCCCCTCACCGACGTTACTGGCAAATAGAGGC
GCCAAGAGAAGAAGGGCGGCGGCAGACAGGCGCAGCGCGACGAAATTGTC
ACGAAATCATGGCAGACAGGTAGAGAAACGCCCGCCGCGCGCTCTTGGCG
TGTGTCTATACTGCTACAAGTAGGAACGATGCCACCGCTTATAACGCGTT
TTCGCGGCCAATGGCCCAGCGGCTCAGCTAAGCTACAACAGCGGTGCCCC
CCCCCCCGTCATGTGCATTCCCTTGCAGGGAATCCTGAGTGCGACGGAAC
GAGAGGTGGTGCAGAAGAACGGCGTCCTGGCCTCCGCGTTCCGAGACTTC
GCGGCGGAATCAGCCAACACCCTCGATGCCCACTCTCTGGGGGCGGTCGG
CGCGAGAAACCTAATGGGCATGGGGTTCATCGCGGCCCGCGTTCGCATGT
TCGGGAGGCCGGCCCTGTCCCTGGGCTGGACGGAGAAGGCCACCAACATG
TGCATGGTACGGTTCGTGTGGAAGGCGTGCGTGGCAAGAGGGGGAGTTGG
CCTGTCTTGTTGGTGCTGAAGGGAACGTGTCATCAGAGTATTTAGGCTCC
GCTGCTTCTGTGTGAGAGGATCAATCCCATGTACGTGCGCGTTTCGTTTT
CCGTTTACGGGGTCAGCCTCCCCTCTCGAGCGGACATCCATTCCTTTAAC
TACTTGAACGCAGCCTCCCCTCTCGAGCAGACATACATCCATTCCTTCAA
CTACTTGAACGCGCGATCGCCCGCCCTCCTTTCTTGCCGCAGAACGCCAC
TCTCGGTGTTTTCCGATCCACTCGTCGCGGCACCGGTGACTACTGGCACG
GCCACGTCCTACCACCGCCACATTTCGACGACGCCACTTGCTCTGTTATT
CTCGCTGCGTGCTGTTTACTTTTCCACTTCGTTGCTGCTATTGCTACCTA
CCGTACTGTCACGGTTGCCAGGTAGGGGACCCTATCTGTGGGTCGTTGCT
GCAAAAGCTGCTGGATCCCACGTGCGTCATGCTCAAGGGGAGAGGGCACT
TCTACGACGCCTACTTGGCCTGTGTTGGTTGTTTGGCCAACTAAATAAAC
GTGTCGTACAATAGTTGGCATTTTAGTGAAGACCAACCTCGCGTTGCTAG
GAATACGGGGCTGTCTGTGCGGCGTCTGCTTTATCGTCGCCACCCGACCG
CCCTAGGAGGTGTTAGTAGGGAGGCGTACCCCAAGACACTTGTAAGGGAC
GAAGGTTGGGGCCATTCAACCCTCCAGTCACGTGGCGTGACGGCCCAGCT
GCCTGCCACTCAAAGTGTAACTAACATAGTAGACCTCGCGCTGTCTCCAG
GAAAACGTAGTTACCCAATACCACACTCACCTCATAGCTACCACGTGTGT
GTAGGGAAGGGAGTGCTACGCAAGTGTTGTTCGTGGTGTGTCGGGAGTCT
CGCTAGGTTGACTGGCAAAGAAAGTTAGCGATTGCGACCCTATTTTGACG
ATCGATGGCGGCGTGCGGTTTCGGCTTCGATCGACACGAACCGGCATCAT
TTGTTGTTGTGTGTAAATAGAGTTTTGTTATAGTTTCAATAATTCAGCAG
CAGGTTGTTGATGGTGTGTGTTGGTGGAGCTCTACAGATAAACATAGAGA
GATGCATTTCGTAGAGCTGTGCTTGCTGTCAGCAACAAACTCTACATAAA
ATCGGCTTGAATTAAAATGCTGCGGTTGTTATAGTCTACATGTAGTCTGG
TCACGTTTCGGAGTCGTTTGTATAGCGGGTGCTTTTGAGTTTCTAAAAAG
GGGGTGTGTCGTTGTTAGTAATGCTGGGGCGATGAAGCCTCTCGCGTGTG
CGGTTCGAGAGCTGGCAAGAGGGATACGTCTCCCCACTGTGGGCCAGTCG
AACGGAAAAAGCTCCGCCCTGTGGGTGCGGCAAGGGGGAATCTAGTACGT
GGATCTAACTTGTCGGCGTTTTGGTTTGTTGGGTGGTGAGGAATTGCAAT
CGGATGGCTACACGATCGACGTTGCCATTCAGTTTGAAGAACTATTCTGC
GCGTCAAAATGAAATTCGGCGTTGCGTATGTGCCGTGTTTGGTTCTGTGT
GCGGTATATATTGTTTTCGTCATGAAACAGCGTCCATGTGTTCGCAGTTT
TGTTGTTCTTGGGTGCGTTAGTTAATGTAGTTTGTTGTCGTGTATGATGT
GCGGCATTTTCCAGGAGTATTTTTTTTACAAAGCCCGGGAGGATTTGAGA
GCGGTTCGATGAGCAGGTCCGAGGTTCTCATGTTTTTGGGTGTGTTTCTA
ATCTCGATCGTTTATTTTCCTTCTTTCATTATTTCGTC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig814:22364..26851-

>mRNA_E_fasciculatus_S2_contig814.16295.1 ID=mRNA_E_fasciculatus_S2_contig814.16295.1|Name=mRNA_E_fasciculatus_S2_contig814.16295.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:22364..26851- (Ectocarpus fasciculatus EfasUO2)
ATGTGGTACTGCCACGCACTGCCGCACGGACTAGGTGCGGGGCGACCGCT
CCGAGGGAACTTCGGGACGGGCAAGGCCGGGGATTTGCTAGGAGCGGTGT
GGCATTTCGTGGGGCAGGGTGCCTTCATCCGGCTCGTGGCCGCGTCGGGC
CGGGTCATCTCTTTGAACGTGCTGGAGGCGAACGGGATCCTGCTGGGCCT
CAGCCACCTCGGCAACGGTATTGCCGGCTCCCGGATGAGGCGTGTTGTCG
GCGCCACGGGGGCGGCGGCGGTGGCGGGGGCGGCGGCGACGACAGAGGCG
CACGCCTATCAACTGCGCGGGTTCTTCTCCCGGACGAACGGGATATTCGG
AGAGAGGCCCGTCCTTTCCATGCCGTTCGACACCGCCGATACGTTGTTGG
CCCTCCAGGGAATCCTGAGTGCGACGGAACGAGAGGTGGTGCAGAAGAAC
GGCGTCCTGGCCTCCGCGTTCCGAGACTTCGCGGCGGAATCAGCCAACAC
CCTCGATGCCCACTCTCTGGGGGCGGTCGGCGCGAGAAACCTAATGGGCA
TGGGGTTCATCGCGGCCCGCGTTCGCATGTTCGGGAGGCCGGCCCTGTCC
CTGGGCTGGACGGAGAAGGCCACCAACATGTGCATGGTAGGGGACCCTAT
CTGTGGGTCGTTGCTGCAAAAGCTGCTGGATCCCACGTGCGTCATGCTCA
AGGGGAGAGGGCACTTCTACGACGCCTACTTGGCCTGTGTTGGTTGTTTG
GCCAACTAA