mRNA_E_fasciculatus_S2_contig814.16293.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE) HSP 1 Score: 643 bits (1658), Expect = 1.310e-224 Identity = 438/707 (61.95%), Postives = 440/707 (62.23%), Query Frame = 1
Query: 1 MPTQIAQMEMDQPVELIHQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAVPTDDTGAESGSESRQDTRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKIEAFVQRPRGW 1407
MPTQIAQMEMDQPVELIHQQ XXXXXXXXXXXXXXXXX SPAAVPTDD GAESGSESR DTRQESLA+DPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVS+EKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPV IGSSVTSSPATSATGRR LGMFPME MTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGP ATQTAQYLVSQKIEAFVQRPRGW
Sbjct: 1 MPTQIAQMEMDQPVELIHQQEDDEQRSNSEVMDVEVQXXXXXXXXXXXXXXXXXPS-----SPAAVPTDDAGAESGSESRHDTRQESLAEDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVMIGSSVTSSPATSATGRRITSPPRLSSSSPRRTARGARGGGRMVGRGFGSGNVGNRFQPQQFRQQHQQXXXXXXXXXXXXXXXXHQFYRQQSGSMQXXXXXXXXXXXXXXXXXXXXXXXXHQQRLPMSPASIAPPTPXXXXXXXXXXXXXASMVVSLPMGPGGPMVSSPMQMAPMGPMSHPSATAPVYTMSYAPAPAGNLYHQGGMQAAPSMPGPVATVGGDGQPRGYPAMAVPPQXXXXXXXXXXXXXQQLPRQQLGMFPMEPMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEAFVQRPRGW 702
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI) HSP 1 Score: 401 bits (1031), Expect = 1.220e-135 Identity = 262/268 (97.76%), Postives = 262/268 (97.76%), Query Frame = 1
Query: 22 MEMDQPVELIHQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAVPTDDTGAESGSESRQDTRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGH 825
MEMDQPVELIHQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPAAVPTDD GAESGSESR DTRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMV IATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYR H
Sbjct: 1 MEMDQPVELIHQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SPAAVPTDDAGAESGSESRHDTRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRSH 266
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA) HSP 1 Score: 211 bits (537), Expect = 2.270e-60 Identity = 142/373 (38.07%), Postives = 191/373 (51.21%), Query Frame = 1
Query: 274 PDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGC---AKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKIEA 1383
P A+K LV N AGSLIGK G TI+++QL++ +V+++TSGMY PGT +R VLV G+ VK AC L+LHT+H + C A L + +A+EVTQRLLIP +AGGLVIGR G+NI L +SGA+V+L QK ER+VT+ G L + ++ML+D L EP + + NLSVNY +H A AA G+ T + A + P+ M T+PVAAA+A TT+TV +P+NM + SGARINVSQR F+PGT NR +TITG P A Q AQ+L++ +I+A
Sbjct: 46 PPCALKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVH-EQGRDRDCGVPAPLDIGTERDALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSGARVSLSQKQTSPSSERVVTIGGSLGACRLCIDMLLDTLKREPAAAVYTNLSVNY-----AHPPAGAAAAXXXXXXXXXT---------------GSAEATGISVDRHARQPLPPLPTYPPEMLDLIQPLN----------------------MPAPTHPVAAAVAGAAAVTTITVSIPDNM----------------STSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQA 359
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: RNA-binding (protein Nova-1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4YXF0_9TELE) HSP 1 Score: 166 bits (421), Expect = 2.800e-43 Identity = 124/378 (32.80%), Postives = 188/378 (49.74%), Query Frame = 1
Query: 286 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNNESG--CAKLVSQEKAEAIEVTQ-RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKAD-VKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRRLGMFP---------MEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKI 1377
+K L+P++ AGS+IGK G TI +Q + ++++ S +YPGT ER L+ G E + I + +P + + + L Q V Q +L++P + GL+IG+ GA + A++ SGA V L QK + + + ER+VT+ G+ KAVE++V K+ E+P S N+S + + + A P PY A+ A P+ AAAAA A S + + + +S + LG+ P + NP AAA + V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ+I
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNISYS--------NVSGPVANSNPTGSPY-------------ANTAEVLPNAAAAAATAFS-------------GNDLLAITSALNTLASYGYNTNTLGLGLNPAAASGVLAAVAASANPAAAAALADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 378
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: RNA-binding (protein Nova-2 (Fragment) n=2 Tax=Bifurcata TaxID=1329961 RepID=V8NGQ9_OPHHA) HSP 1 Score: 161 bits (407), Expect = 2.340e-41 Identity = 129/403 (32.01%), Postives = 193/403 (47.89%), Query Frame = 1
Query: 250 RQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNNESGCAKLVSQEKAEAIEVTQ-------------RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKAD-VKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLS-VNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTS------SPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTT-----VTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKI 1377
R S QD + +K L+P++ AGS+IGK G TI +Q + ++++ S +YPGT ER LV G E + I + +P S K E++ + Q ++++P + GL+IG+ GA + A++ SGA V L QK + + + ER+VT+ G+ KAV+++V K+ E+P S N+S N G A P PY + T+ AAAAAA AS P GS + + + AT+ATG G VA++ + + V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 3 RPHSHTQDGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHNFIAEKVREIPQ----------SVVKPESVNILQPQTTMNPDRAKQAKVIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPEGINLQERVVTISGEPEQIHKAVDIIVQKIQEDPQSSSCLNISYANITGP---------VANSNPTGSPYANS---------------TDVLPAAAAAATASGLLGHTSLAGVGAFPAALPGFSGSDLLAISTALNTLATAATGAANGYLGTASPL--VASSFLATEKLVESAKDMVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGTPAATQAAQYLISQRV 369
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: NOVA (alternative splicing regulator 1 n=2 Tax=Cichlidae TaxID=8113 RepID=A0A3Q0SIN8_AMPCI) HSP 1 Score: 157 bits (397), Expect = 5.440e-40 Identity = 117/370 (31.62%), Postives = 184/370 (49.73%), Query Frame = 1
Query: 286 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNNESG--CAKLVSQEKAEAIEVTQ-RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKAD-VKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVT-VGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKI 1377
+K L+P++ AGS+IGK G TI +Q + ++++ S +YPGT ER L+ G E + I + +P + + + L Q V Q +L++P + GL+IG+ GA + A++ SGA V L QK + + + ER+VT+ G+ KAVE++V K+ E+P S N+S + + + A P PY +T + + G P AA ++ + + +G + + A+ + + NP AAA V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ+I
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNISYS--------NVSGPVANSNPTGSPYA------NTGEAGLTGMGAFP--AAMSSLSGNDLLAITSALNTLASYGYNTNTLGLGLNPAAASGV------LAAVAASANPAAAAAKLADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 362
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM4_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.630e-39 Identity = 156/455 (34.29%), Postives = 218/455 (47.91%), Query Frame = 1
Query: 274 PDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH--VPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAG-----------------------------IVP----APLPYQRAP--RDPSTPQKA----ASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXX---------------------------------VTPVRI------GSSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKI-EAFVQR 1395
P AIK LV N AG LIGK GATI+ +Q + +V +++S PG ++R VL++G+ VK A L+LHT+H D + + A L E+TQRLLIP AGGLVIG RG+ + AL +ASGA+V+L K + ER++T+ G L + ++ML+D L EP +SR+ NLSV+ + AA A I P APL ++P PQ A P +A XXXXXXXXXXXXXXX VTP G + P + + PM + +P +A+A TT+ V +P+ +IG ILG GG ++ELQ ++GARI+VS+R +PGT +R++TITG A AQY++ ++ EA QR
Sbjct: 264 PACAIKLLVSNNMAGGLIGKAGATIQSLQAQTGALVNVSSSACL-PGILDRVVLISGDAAPVKMAVALVLHTVHDHARDRDATEPAPLAIAAALNEQEITQRLLIPAAAGGLVIGWRGSGVQALSSASGARVSLSHKRNPASAERVMTIHGALGACRLCIDMLLDVLRREPAMSRYLNLSVDPPQLQQGDAPAAGAPSXXXXXXXXXSQELADVATWVGGGVEGEHTISPVASAAPLTMHQSPTLHHHVPPQHVLELPVQQAAAHPQHLMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTPAAPVGYYPGGGMMVGMPVLAPV---VPQMPMPMVQHPDVSAVA-----TTIMVSIPDALIGVILGRGGVTVNELQMITGARISVSRRGNALPGTTDRVVTITGSAAAAHAAQYMMMHRVQEACAQR 709
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: RNA-binding (protein Nova-1-like n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A1S3GH48_DIPOR) HSP 1 Score: 152 bits (384), Expect = 1.970e-38 Identity = 117/392 (29.85%), Postives = 178/392 (45.41%), Query Frame = 1
Query: 247 TRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNNESGCAKLVSQEKAEAIEVTQ-------------RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKAD-VKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKI 1377
T++ + ++ + +K L+P++ AGS+IGK G TI +Q + ++++ S +YPGT ER LV G E + I + +P + K E + + Q +L++P + GL+IG+ GA + A++ SGA V L QK + + + ER+VTV G+ KAV +V K+ E+P S N+S + A A P PY AS A P AAAA G +T+ + + + L V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++
Sbjct: 22 TKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQ----------AMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA--------NVAGPVANSNPTGSPY-------------ASPADVLPAAAAAA---------------------------GGFLTAEKLAAESAKEL------------------------VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 331
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: RNA-binding (protein Nova-2 n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=A0A8J6KYE5_MICOH) HSP 1 Score: 154 bits (389), Expect = 2.150e-38 Identity = 117/389 (30.08%), Postives = 181/389 (46.53%), Query Frame = 1
Query: 286 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNNESGCAKLVSQEKAEAIEVTQ-------------RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKAD-VKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRGHGSSHSKAAMAAGIVPAPLPYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIGSSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKIEAFVQRPRGW 1407
+K L+P++ AGS+IGK G TI +Q + ++++ S +YPGT ER LV G E + I + +P + K E + + Q +L++P + GL+IG+ GA + A++ SGA V L QK + + + ER+VTV G+ KAV +V K+ E+P S N+S + A A P PY P+ AA+ A + + + + +S + LG+ + +AA +A+ V + VP N++GAILG GG + E Q L+GARI +S++ F+PGT NR +TITG P ATQ AQYL+SQ++ + Q W
Sbjct: 38 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQ----------AMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA--------NVAGPVANSNPTGSPYA----SPADVLPAAAAXXXXXXXGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLSLGLN-SAAASGVLAAKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV-TYEQGTSAW 402
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Match: RNA-binding (protein Nova-2-like isoform X1 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AADD38B) HSP 1 Score: 154 bits (389), Expect = 2.360e-38 Identity = 129/397 (32.49%), Postives = 204/397 (51.39%), Query Frame = 1
Query: 247 TRQESLAQDPDSAIKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLH-VPDNN-ESGCAKLVSQEKAEAIEVTQ-RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQK-ADVKVHERLVTVQGKLTSATKAVEMLVDKLVEEPVL-SRFANLS-VNYRGH--GSSHSKAAMAAGIVPAPL-PYQRAPRDPSTPQKAASDAGTEPDTAAAAAAAASPXXXXXXXXXXXXXXXVTPVRIG--SSVTSSPATSATGRRLGMFPMEQMTNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQALSGARINVSQRDAFMPGTENRILTITGGPLATQTAQYLVSQKIEAFVQRPRG 1404
T++ + A D + +K L+P++ AGS+IGK G TI +Q + V+++ S +YPGT ER LV G E + A I + +P +S L SQ + Q +L++P T GL+IG+ GA + +++ SGA V L QK A + ER+VTV G+ + AV ++ K E+P + + N+S N +G S+ + + A G+ A + PY P+ P +A+ +G + + A + V P + +S T A A G G ME++ A ++A + T+ + VP ++GAILG GG + E Q L+GARI +S++ F+PGT +R + ITG P ATQ AQYL+ Q++ A+ Q R
Sbjct: 45 TKRSNTADDAELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATVKLSKSKDFYPGTTERVCLVQGTMEALLAAHNFIAEKVRELPQGAMKSDLGLLPSQSSVTSERAKQAKLIVPNTTAGLIIGKGGATVRSIMEESGAWVQLSQKPAGPNLQERVVTVSGEASQVQHAVRSIIHKAKEDPPQGTSYLNISYTNTQGPVANSNPTGSPYAGGMAEATIAPY------PAAPAASAAISGGDLLAISTALNTLASYGYSTGLGFNPLVGGVHPAAVNLLASYTGE-AGPALGLGGGGILMEKL---AAESVAGKE---TLEMAVPETLVGAILGKGGKTLIEYQELTGARIQISKKGEFVPGTRSRKVIITGPPGATQAAQYLIGQRV-AYEQSVRS 427 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig814.16293.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig814.16293.1 >prot_E_fasciculatus_S2_contig814.16293.1 ID=prot_E_fasciculatus_S2_contig814.16293.1|Name=mRNA_E_fasciculatus_S2_contig814.16293.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=470bp MPTQIAQMEMDQPVELIHQQEDDEQRSNSEVMDVEEGQQQQQQQQQQQQSback to top mRNA from alignment at E_fasciculatus_S2_contig814:8864..15384- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig814.16293.1 ID=mRNA_E_fasciculatus_S2_contig814.16293.1|Name=mRNA_E_fasciculatus_S2_contig814.16293.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6521bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:8864..15384- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig814:8864..15384- >mRNA_E_fasciculatus_S2_contig814.16293.1 ID=mRNA_E_fasciculatus_S2_contig814.16293.1|Name=mRNA_E_fasciculatus_S2_contig814.16293.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1410bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:8864..15384- (Ectocarpus fasciculatus EfasUO2)back to top |