mRNA_E_fasciculatus_S2_contig8139.16291.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8139.16291.1
Unique NamemRNA_E_fasciculatus_S2_contig8139.16291.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8139.16291.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8139contigE_fasciculatus_S2_contig8139:2622..2957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size337
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.5842268-UTR-E_fasciculatus_S2_contig8139:2621..26241696842475.5842268-UTR-E_fasciculatus_S2_contig8139:2621..2624Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8139 2622..2624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.598982-CDS-E_fasciculatus_S2_contig8139:2624..29571696842475.598982-CDS-E_fasciculatus_S2_contig8139:2624..2957Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8139 2625..2957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8139.16291.1prot_E_fasciculatus_S2_contig8139.16291.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8139 2625..2957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8139.16291.1

>prot_E_fasciculatus_S2_contig8139.16291.1 ID=prot_E_fasciculatus_S2_contig8139.16291.1|Name=mRNA_E_fasciculatus_S2_contig8139.16291.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
MGRCLAKSTPPRFELLALRLQVGKHFQPPLVFGAPLLLRALLLPRSPLGF
FLPSSPRGLLLASPLLRGRELLLRDLRLGLQSPAKGFLQYLPRFGLIFRQ
GKARGLVQVKI
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mRNA from alignment at E_fasciculatus_S2_contig8139:2622..2957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8139.16291.1 ID=mRNA_E_fasciculatus_S2_contig8139.16291.1|Name=mRNA_E_fasciculatus_S2_contig8139.16291.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8139:2622..2957+ (Ectocarpus fasciculatus EfasUO2)
CGGATGGGCCGATGTCTCGCGAAGTCGACTCCACCTCGCTTCGAGCTCCT
TGCGCTTCGCCTCCAGGTCGGCAAACATTTTCAGCCGCCGCTGGTCTTCG
GCGCGCCTCTCCTCCTCCGCGCGTTGTTGCTCCCGCGCAGCCCTCTCGGC
TTCTTCCTCCCGAGCTCTCCGCGCGGCCTCCTCCTCGCGAGCCCGTTGCT
CCGCGGCCGCGAACTGTTGCTCCGCGATCTCCGTCTCGGCCTCCAGTCGC
CGGCTAAAGGCTTCCTGCAATACCTTCCACGCTTCGGCCTCATCTTTAGA
CAGGGCAAGGCACGCGGGCTGGTCCAGGTTAAAATC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8139:2622..2957+

>mRNA_E_fasciculatus_S2_contig8139.16291.1 ID=mRNA_E_fasciculatus_S2_contig8139.16291.1|Name=mRNA_E_fasciculatus_S2_contig8139.16291.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8139:2622..2957+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCCGATGTCTCGCGAAGTCGACTCCACCTCGCTTCGAGCTCCTTGC
GCTTCGCCTCCAGGTCGGCAAACATTTTCAGCCGCCGCTGGTCTTCGGCG
CGCCTCTCCTCCTCCGCGCGTTGTTGCTCCCGCGCAGCCCTCTCGGCTTC
TTCCTCCCGAGCTCTCCGCGCGGCCTCCTCCTCGCGAGCCCGTTGCTCCG
CGGCCGCGAACTGTTGCTCCGCGATCTCCGTCTCGGCCTCCAGTCGCCGG
CTAAAGGCTTCCTGCAATACCTTCCACGCTTCGGCCTCATCTTTAGACAG
GGCAAGGCACGCGGGCTGGTCCAGGTTAAAATC
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