mRNA_E_fasciculatus_S2_contig8136.16289.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8136.16289.1
Unique NamemRNA_E_fasciculatus_S2_contig8136.16289.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8136.16289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND7_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 6.800e-81
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:    1 RDMAPTAVFVRRAEADSASAASPATGETVSAENQASRRVMAIGRREQGKRQRWDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAGKTCGGMLRSISTAGKPWLALETKAQLRRGNESLVQGLVNQAEPFPWESKPS 429
            RDMAPTAVFVRRAEADSASAASP+ GET SAENQASRRVMAIGRREQGKRQRWDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAG   GGMLRSISTAGKPWLALETKAQLRRGNESLVQGLVNQAEPFPWESKP+
Sbjct:  214 RDMAPTAVFVRRAEADSASAASPSAGETGSAENQASRRVMAIGRREQGKRQRWDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAG---GGMLRSISTAGKPWLALETKAQLRRGNESLVQGLVNQAEPFPWESKPA 353
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BLAST of mRNA_E_fasciculatus_S2_contig8136.16289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.620e-49
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 RDMAPTAVFVRRAEADSASAASPATGETVSAENQASRRVMAIGRREQGKRQRWDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAGKTC 285
            RDMAPTAVFVRRAEADSASAA P+ GET SAE QASRRVMAIGRREQGKRQ+WDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAGK C
Sbjct:  246 RDMAPTAVFVRRAEADSASAALPSAGETGSAEKQASRRVMAIGRREQGKRQKWDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAGKAC 340
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8136.16289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.830e-7
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  325 WLALETKAQLRRGNESLVQGLVNQAEPFPWESK 423
            +L    +AQLRRGNESLVQGLV+QAEPFPWESK
Sbjct:    5 FLLFRCQAQLRRGNESLVQGLVSQAEPFPWESK 37
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8136.16289.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.800e-8195.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.620e-4992.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.830e-778.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8136contigE_fasciculatus_S2_contig8136:4119..6252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.5
Seed ortholog evalue7.5e-07
Seed eggNOG ortholog164328.Phyra73988
Model size431
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.MobA-like NTP transferase domain
EggNOG OGs29D5M@1,2QWFD@2759,3QAN0@4776
Cds size423
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.3833435-CDS-E_fasciculatus_S2_contig8136:4118..42021696842475.3833435-CDS-E_fasciculatus_S2_contig8136:4118..4202Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8136 4119..4202 -
1696842475.3962703-CDS-E_fasciculatus_S2_contig8136:4684..47461696842475.3962703-CDS-E_fasciculatus_S2_contig8136:4684..4746Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8136 4685..4746 -
1696842475.4067874-CDS-E_fasciculatus_S2_contig8136:5451..56321696842475.4067874-CDS-E_fasciculatus_S2_contig8136:5451..5632Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8136 5452..5632 -
1696842475.4172058-CDS-E_fasciculatus_S2_contig8136:6150..62461696842475.4172058-CDS-E_fasciculatus_S2_contig8136:6150..6246Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8136 6151..6246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.428058-UTR-E_fasciculatus_S2_contig8136:6246..62521696842475.428058-UTR-E_fasciculatus_S2_contig8136:6246..6252Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8136 6247..6252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8136.16289.1prot_E_fasciculatus_S2_contig8136.16289.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8136 4119..6246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8136.16289.1

>prot_E_fasciculatus_S2_contig8136.16289.1 ID=prot_E_fasciculatus_S2_contig8136.16289.1|Name=mRNA_E_fasciculatus_S2_contig8136.16289.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=141bp
MAPTAVFVRRAEADSASAASPATGETVSAENQASRRVMAIGRREQGKRQR
WDGVECGAILLSPEIFDTLSDLGKRRKYFTLADGLDFMAGKTCGGMLRSI
STAGKPWLALETKAQLRRGNESLVQGLVNQAEPFPWESKPS
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mRNA from alignment at E_fasciculatus_S2_contig8136:4119..6252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8136.16289.1 ID=mRNA_E_fasciculatus_S2_contig8136.16289.1|Name=mRNA_E_fasciculatus_S2_contig8136.16289.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2134bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8136:4119..6252- (Ectocarpus fasciculatus EfasUO2)
AGGGACATGGCGCCCACGGCGGTCTTCGTGCGGAGGGCGGAAGCCGACTC
CGCTTCAGCGGCGTCGCCCGCCACGGGCGAGACTGTCAGCGCAGAGAACC
AGGTGTGTGATCCCGGGCGAAGGTTGGGGTGTGGGGGGGGTGTGCCAAGA
AGGGAGAAGGCGTGTGGAGGAGGGGGGTGTATTCGCTATGGATTTTGGTC
CGGCGCGTCGTTGTAGGAGTCGAGGGTGAGAGCGTTGGCTGGGAATACTG
TTCCTGTTATGGTATCACGAGATTGACTTGAAGTTTCGCACGTGTTCCAT
ATTGCGAGAAGTGTCTGTTGAGCTCGTCCCGCGTGGCTGGTGAGGTGAAC
AAAACGTACCCATGGGCGGGGCCAAGGCTTGCTTCCGCGGGTTATGTTCG
TTTTTGCCCCGTCGTGGCTGTCGTTGACGCTCGACGGATTCACATTATTT
TTTTCGAGATTTTTTGTTTCGATTAGGCAACGTTGATTGCGTGGGGAGGG
GCATGCAATATCAACACTGCATGATATGAAGATTATGTTACACTTGAAAT
TTACCATGGCGCAAGACGAGTGTATCTGTAATTGATGGTACGTTATGTGC
ATGATGGGGTTATTCTGCAGGCGTCCCGGCGAGTCATGGCCATAGGGAGG
CGGGAGCAGGGCAAGCGGCAGAGGTGGGACGGCGTGGAGTGCGGCGCGAT
CCTGCTTTCTCCGGAGATCTTCGACACCCTCTCGGACCTCGGGAAGCGGA
GGAAGTACTTCACGCTTGCCGACGGGCTTGACTTCATGGCAGGCAAGACG
TGTGCGGTTTGGGGTGTCGATGCTGCTGCAGCCGTGTGGTTGGATGGTTG
CGAGGCCTGTGTGTGCGTTTTTCTTAATTGGCATCGACCGCCCTATACGG
CTGACCAATGAAAAGACGTGAGTGTGTGTGTGTGTGCGTGTGTCGACTTT
ATGTTTGCGGTCGTGGTGAGATAGCTGCGCTTGTTATTCACTGTTGGTCT
AATAGTTTTTCCGCTGCTGTTTGTTCTCCCACTACCGCTGTTTTTTTTAC
GGCAGTCGAAGACTGCTTGAAAACCTTTTCATTGTCGTGTCATAGCACAC
AAAAGGATGTGTCTACTTTTTGTGCGTTCTGTAAGAAAGAGGTCTACGAT
CATTACATGACTTTCAGATGCCAATTTAGTTTTCCTGTGAGCGGCAACAA
GCCTCGTTTTAAATCCCGCCTCTATATTGTGCCGGTTCTCTCTAGTCGAC
GACTGCTGAAGCACGACTGAGAAACTGTTGCCCTTCCGGCAATTTTTGAC
GAGTTTTTCCGTTCCCCGACTCGCTATCTCCACCTAACTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTC
TCCCTCCCTCTCTCTCTCGTGCGCTGCTCGTTCTACATCGTTTTCTAAAT
CCACAGGCGGGGGCATGCTGAGGAGCATTTCCACCGCAGGAAAGCCCTGG
CTCGCTCTCGAGACGAAGGTAGGACGGAGGGGATCATCGGACAGGAACAC
ACCAACAGAGTGTAACGGCGTTCTTGCCTTCGAACCGTAACAAGCAGTTT
TGTTATACCGCATCGCCGAGAAGGACGGTACAGCTGGACGGGGGGGGGGG
TAACCCCTTGTACTGATACACAATGGACCTGGAGGGAATAAACGTCAAAA
TCGGGTCGAGACTCAAGAGTCTTGCTTTATCGACACTGCTGTGGAGCACA
GGTTTTCAAATGGAGTTTATGCAAGGATCCGCGGCTGAGCTGTGCTTCTT
AACCCTGATTCTTGTTTTTCGTGAAATTTTGAGCCAGTTCTTCTTAGCTG
CGGGCCCGTCCTGTTCACAGAAACCGTCGGTAGCACCAAACACTTCGTTT
CGAGTTTTCGCTTACTCACGCTGTCAAGTCGCGTCTCTCTCCTGCTATTT
TGTTTGTGCCCCCTTTTGCTGTATTGACACTGCGGTTTTGTTTGTTTCAG
GCGCAACTCCGCCGGGGGAATGAGTCCCTTGTGCAGGGACTGGTGAACCA
GGCCGAGCCGTTCCCGTGGGAGTCGAAACCCTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8136:4119..6252-

>mRNA_E_fasciculatus_S2_contig8136.16289.1 ID=mRNA_E_fasciculatus_S2_contig8136.16289.1|Name=mRNA_E_fasciculatus_S2_contig8136.16289.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=423bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8136:4119..6252- (Ectocarpus fasciculatus EfasUO2)
ATGGCGCCCACGGCGGTCTTCGTGCGGAGGGCGGAAGCCGACTCCGCTTC
AGCGGCGTCGCCCGCCACGGGCGAGACTGTCAGCGCAGAGAACCAGGCGT
CCCGGCGAGTCATGGCCATAGGGAGGCGGGAGCAGGGCAAGCGGCAGAGG
TGGGACGGCGTGGAGTGCGGCGCGATCCTGCTTTCTCCGGAGATCTTCGA
CACCCTCTCGGACCTCGGGAAGCGGAGGAAGTACTTCACGCTTGCCGACG
GGCTTGACTTCATGGCAGGCAAGACGTGCGGGGGCATGCTGAGGAGCATT
TCCACCGCAGGAAAGCCCTGGCTCGCTCTCGAGACGAAGGCGCAACTCCG
CCGGGGGAATGAGTCCCTTGTGCAGGGACTGGTGAACCAGGCCGAGCCGT
TCCCGTGGGAGTCGAAACCCTCC
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