mRNA_E_fasciculatus_S2_contig8131.16285.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8131.16285.1
Unique NamemRNA_E_fasciculatus_S2_contig8131.16285.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8131.16285.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G150_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.210e-74
Identity = 131/174 (75.29%), Postives = 141/174 (81.03%), Query Frame = 1 
Query:    4 TAAPLPNPVPEATPLPLAQVPSVSGFIFMSENALTQCEVGCVEGLAAAFSLQNYRVQCMCPEVRRRSLRSLLANPRNVTSIHPLEGAYLSRRRLAAAEVPYVVTVSGITIQGIAQSVDHFQANYLDVSSSLGVPGDEVVFSTLEFIATSSSSNTLEGSNMDVPPLVNSPASGAS 525
            TAAPLP           AQ PSVSGFI +SE AL QCEVGCVEGLAAAF LQ YRVQC+CPEVRRRSLRS+LAN RNVTS+HP EGAYLSRRRL  AEVPYVVTV GIT QG+ QS++HFQANY++VSSSLGVPGDEVVFSTLEF+A SSS      SNMDVP LVN PASGAS
Sbjct:  254 TAAPLPXXXXXXXXXXSAQAPSVSGFIIVSETALAQCEVGCVEGLAAAFDLQPYRVQCICPEVRRRSLRSMLANRRNVTSVHPSEGAYLSRRRLTTAEVPYVVTVPGITTQGMVQSINHFQANYMEVSSSLGVPGDEVVFSTLEFVAASSS----HISNMDVPLLVNPPASGAS 423
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8131.16285.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.210e-7475.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8131contigE_fasciculatus_S2_contig8131:1769..3599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score138.7
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D8LG77
Model size531
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2D0P0@1,2SEV1@2759
Cds size531
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.036494-CDS-E_fasciculatus_S2_contig8131:1768..18851696842475.036494-CDS-E_fasciculatus_S2_contig8131:1768..1885Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8131 1769..1885 -
1696842475.058207-CDS-E_fasciculatus_S2_contig8131:2189..23451696842475.058207-CDS-E_fasciculatus_S2_contig8131:2189..2345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8131 2190..2345 -
1696842475.0709698-CDS-E_fasciculatus_S2_contig8131:3024..31141696842475.0709698-CDS-E_fasciculatus_S2_contig8131:3024..3114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8131 3025..3114 -
1696842475.0827632-CDS-E_fasciculatus_S2_contig8131:3431..35991696842475.0827632-CDS-E_fasciculatus_S2_contig8131:3431..3599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8131 3432..3599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8131.16285.1prot_E_fasciculatus_S2_contig8131.16285.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8131 1769..3599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8131.16285.1

>prot_E_fasciculatus_S2_contig8131.16285.1 ID=prot_E_fasciculatus_S2_contig8131.16285.1|Name=mRNA_E_fasciculatus_S2_contig8131.16285.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=177bp
MTAAPLPNPVPEATPLPLAQVPSVSGFIFMSENALTQCEVGCVEGLAAAF
SLQNYRVQCMCPEVRRRSLRSLLANPRNVTSIHPLEGAYLSRRRLAAAEV
PYVVTVSGITIQGIAQSVDHFQANYLDVSSSLGVPGDEVVFSTLEFIATS
SSSNTLEGSNMDVPPLVNSPASGASSS
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mRNA from alignment at E_fasciculatus_S2_contig8131:1769..3599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8131.16285.1 ID=mRNA_E_fasciculatus_S2_contig8131.16285.1|Name=mRNA_E_fasciculatus_S2_contig8131.16285.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8131:1769..3599- (Ectocarpus fasciculatus EfasUO2)
ATGACGGCGGCGCCCCTGCCGAACCCGGTCCCCGAGGCCACGCCCTTGCC
GTTGGCGCAGGTGCCCAGCGTGAGCGGCTTCATCTTCATGAGCGAAAACG
CACTGACACAGTGCGAGGTCGGGTGCGTGGAGGGTCTCGCCGCGGCCTTC
TCTCTTCAAAACTATCGTGTGAGACAGAGGGCGGCGTGGATACATTTTTT
GGTTTCGGGATCATTGTGTCTAGGCGGAGAACAGGCTGACATACGTAGCA
CTCGCAGGCAGGATCTCAGGCAGGAAAGCGAGGGTACGGGCGGACAAAAC
TACCTCTGGCTGGTCGTGTTCAATGCGCGGTGGGTTGTGACTTCCCCGCG
GACACCTGCTGCTTCCTCTTGCTTGGCATCTACGAACATACTGCAAAGAA
AGGATTACAATGGTTGTCGGGTGCGTATCCAAAGAAACACGCCCGCACGC
ACGTACGCGCACGCCGCAATGACGTGTATGGGCAGGTGCAATGTATGTGT
CCGGAAGTGAGGAGACGATCACTGAGAAGCTTACTGGCGAACCCGCGGAA
CGTCACAAGTATCCACCCCTTGGAGGTGCGTCGCCATGAGAAGTCAATGG
TGATCGAGGTCGCGGTTCGGTGCAATTCGGAATGACTCTGAACGCAGAAA
TGCAGCATTTATTAGACAGACTAGCTGAATTCATTCATGAAGGTTCCTGG
ACACGTGGAAAAATAACCTCGCCCGCCGAATCTCCTCATGAACTAGGTTG
TAGAGGGGTTCGATGTCTTAGGCGCAGCGCCATCCCCTTCATGTTGAGTA
CCCCCCCAGCAGCGAACGCCAACAAGCTGGCGCCACGCTGAACATCGCCG
GGGACCGACTAATACTTACCTTGGGCTTGACGCTAGCCCTAATCTTAACC
CGTTCCTCCCAAGGGCGCCAACATGAAGCCTTTCTGGTGGGAAACCCCAT
GGCCGTCTTCTCGAGCGGTCATCTTGATTGCGACTGATTGTGCTGGTGCC
GCAGACGTCCCTCGCCGGTGTCTTGTATGCACCCGTCGCAGGTATAATAC
GGCAGGCTTCCCGTTCCTTCGTCCCTTCAAAAACGGTGTACCATCCTGCG
AATGCATCCGTGTACGCACTGCTGTACACACCCTGTCGGCGGTTTTGTTG
TCTGCTGACAGGGCGCTGCTTGTTTTTTCGATTTTGGTTGTTCTTTGTAT
GTTCATTTTCGGGCACCCGATCGACACGTACGCACGTGGACGGGCCGCAC
GCAGGGCGCGTACCTCTCACGGAGGCGTCTGGCCGCCGCTGAGGTGCCGT
ACGTCGTGACGGTGTCGGGCATCACAATCCAGGGGATCGCCCAGTCCGTG
GACCACTTCCAGGCAAACTACCTGGACGTATCGAGTAGCCTTGGCGTTCC
TGGAGACGAGGTGAGCTTTTTTATCATAAACTGCCCGACGTATGTAGTCT
AGACTACATTTATTGTTTCCGAGGGGAGCTTGAGGCGGAATAATATCCAG
CTTATCGCAAGGTCCGTTCTGAACGGTATTCAGCACTCGCGGGGCAGACT
CAGGGCGAGTTACATTGCACCGTGCACGCCACCACCACCACCACCACCAC
AATACCACCCCCATTATCCAAACAAGAATGAAAGAATCTGAAATATTTGA
CATCCTGCACGAATCGTTCTTCGGCATGATGAACGCGGCCGCGACCTCTA
CACGATGACATCAGGTGGTTTTCTCTACTCTAGAGTTCATCGCCACGTCC
TCCTCATCTAATACCCTGGAGGGCAGCAACATGGACGTGCCACCGTTGGT
GAACTCCCCCGCATCGGGGGCCTCCTCCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8131:1769..3599-

>mRNA_E_fasciculatus_S2_contig8131.16285.1 ID=mRNA_E_fasciculatus_S2_contig8131.16285.1|Name=mRNA_E_fasciculatus_S2_contig8131.16285.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=531bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8131:1769..3599- (Ectocarpus fasciculatus EfasUO2)
ATGACGGCGGCGCCCCTGCCGAACCCGGTCCCCGAGGCCACGCCCTTGCC
GTTGGCGCAGGTGCCCAGCGTGAGCGGCTTCATCTTCATGAGCGAAAACG
CACTGACACAGTGCGAGGTCGGGTGCGTGGAGGGTCTCGCCGCGGCCTTC
TCTCTTCAAAACTATCGTGTGCAATGTATGTGTCCGGAAGTGAGGAGACG
ATCACTGAGAAGCTTACTGGCGAACCCGCGGAACGTCACAAGTATCCACC
CCTTGGAGGGCGCGTACCTCTCACGGAGGCGTCTGGCCGCCGCTGAGGTG
CCGTACGTCGTGACGGTGTCGGGCATCACAATCCAGGGGATCGCCCAGTC
CGTGGACCACTTCCAGGCAAACTACCTGGACGTATCGAGTAGCCTTGGCG
TTCCTGGAGACGAGGTGGTTTTCTCTACTCTAGAGTTCATCGCCACGTCC
TCCTCATCTAATACCCTGGAGGGCAGCAACATGGACGTGCCACCGTTGGT
GAACTCCCCCGCATCGGGGGCCTCCTCCAGC
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