mRNA_E_fasciculatus_S2_contig8129.16280.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI) HSP 1 Score: 424 bits (1089), Expect = 1.310e-145 Identity = 242/330 (73.33%), Postives = 265/330 (80.30%), Query Frame = 1
Query: 1 IRNQVDIGTTSAGGARGNGGQRTIAAWSTQARTHRRGKASGAGQAGSNGQDSGRDGVKAHRGRGLTAEGGEFSPGS*GVLHGNQRWPSSAAAWCRRAKSVPSASVLCQSKNNPIYGDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCYITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPGGSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSPVSAPTHDGNLQKILAELEALKADKEKHN 990
+R +VD+GTT++ G RGNGGQRTIAAW + R + +GKA+GA QAGS+GQDSGRD VK +RGRGLTAEGG SPGS GVLH +QR S AAWCRRAKSVPSAS +PIY D VQ GTALQLMSG+VPLVGGLA FTG DLAPDAVECCKLART+ALRLTDGLPDGPIATS DA E+ T AAG GW GGSKFGVLTD VSEEAVMEWFIEEV NYEPSD E+AG RLGKRHLRKILTAVG+DC QGANDTGAKV++LV VLP A+IRPAETSSA GGLVRSPVS PTHDGNL AELE+LKADKEKH+
Sbjct: 25 MRIRVDVGTTNSEGVRGNGGQRTIAAWQRKRRANIKGKAAGARQAGSDGQDSGRDDVKTYRGRGLTAEGGGLSPGSHGVLHCHQR-SLSPAAWCRRAKSVPSAS-------DPIYCDIVQGGTALQLMSGAVPLVGGLADFTG-----------DLAPDAVECCKLARTVALRLTDGLPDGPIATSHDAEEKRTPNAAGVGWAAGGSKFGVLTDGVSEEAVMEWFIEEVTNYEPSDRRETAGSRLGKRHLRKILTAVGQDCPQGANDTGAKVSLLVYVVLPEADIRPAETSSAWGGGLVRSPVSVPTHDGNL----AELESLKADKEKHS 331
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 163 bits (413), Expect = 4.080e-41 Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 1
Query: 289 AKSVPSASVLCQSKNNPIYGDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPGG----SKFGVLTDAVSEEAVMEWFIEEVANYEPSD-------SGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETS 873
A SV +S++C SK G AG L+ +S +VP+V GLAG AALKAGD Y I D+APD+ +CC LARTLAL+L+DG DG + T+ A E+ +H AG G GG G D+ +EEAVM+WF+EEVA+YEP++ + AGR+LGKRHL+ +L AVGRDCL+G N KV VLV +LP A R TS
Sbjct: 512 AASVVCSSLVCTSKT----GRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTS 721
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.840e-40 Identity = 101/214 (47.20%), Postives = 128/214 (59.81%), Query Frame = 1
Query: 289 AKSVPSASVLCQSKNNPIYGDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPGG----SKFGVLTDAVSEEAVMEWFIEEVANYEPSD-------SGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETS 873
A SV +S++C SK G AG L+ +S +VP+V GLAG AALKAGD Y I D+APD+ +CC LARTLAL+L+DG DG + T+ A E+ TH AG G GG G D+ +EEAVM+WF+EEVA+YEP++ AGR+LG RHL+ +L AVGRDCL+G N KV VLV +LP A R TS
Sbjct: 724 AASVVCSSLVCTSKT----GRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTS 933
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.020e-38 Identity = 99/214 (46.26%), Postives = 126/214 (58.88%), Query Frame = 1
Query: 289 AKSVPSASVLCQSKNNPIYGDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPG----GSKFGVLTDAVSEEAVMEWFIEEVANYEPSD-------SGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETS 873
A SV S+S++C SK G AG L+ +S +VP+V GLAG AALKAGD Y I D+APD+ +CC LAR LAL+L+DG DG + T A E+ TH AG G G G D+ +EEAVM+WF+EEVA+YEP+ + AGR+LG RHL+ +L AVGRDCL+G N KV VLV +LP A + TS
Sbjct: 539 AASVVSSSLVCTSKT----GRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTS 748
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 152 bits (384), Expect = 3.110e-37 Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 346 GDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPG-GSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSPVS-APTHDGNLQKILAELEALKA 972
G + GTAL L+S +VP++ GLAG G AL+ GD Y IT +A D +ECC LAR LAL+LTDGL D + + CTH AG G G G +L D + E+ V E +EEVA YE SD G G+RLGK+HLRK+L A+ R CL G++ K+ +L+ +LP A+IR +ETS + +V+SP + APTH+G L + A++ AL+A
Sbjct: 594 GGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMNGGSGSGRDADILPDIIIEDDVFEHLLEEVARYERSDHG---GKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSM-ADIAALQA 808
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.160e-37 Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 346 GDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGD-CY-------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPG-GSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSPVS-APTHDGNLQKILAELEALKA 972
G + GTAL L+S +VP++ GLAG G AL+ GD C IT +A D +ECC LAR LAL+LTDGL D +A + TH AG G G G + D + E+ V E+ +EEVA YE SD G G+RLGK+HLRK+L A+ R CL G++ K+ L+ +LPGA+IR +ETSS +VRSP + APTHDG L + A++ AL+A
Sbjct: 554 GGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSGSGRDADISPDDMIEDDVFEYLLEEVARYERSDHG---GKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSM-ADIAALQA 768
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE) HSP 1 Score: 145 bits (365), Expect = 3.280e-36 Identity = 107/246 (43.50%), Postives = 131/246 (53.25%), Query Frame = 1
Query: 349 DTVQAGTALQLMSGSVPLVGGLAGFTGAALKA-------------------------------GDCYITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPGGSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSG------ESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSP-VSAPTHDGNLQKILAELEALKA 972
D V AG A+QL+S +VP+VGGLA F AALKA D ITDLA DAVE C LAR LALR+T+GL G I+T+ ++ G GW G L D SEEAVMEWF EEVAN+E + + E AGRRLGK+HL+K+L AVG+ L G N T KV L+ + G+ R + A LV P V AP+HDG+L + AE ALKA
Sbjct: 139 DEVAAGEAMQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNS-------VGGRGWN---LDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRD-AEFAALKA 373
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 145 bits (367), Expect = 2.420e-35 Identity = 101/229 (44.10%), Postives = 133/229 (58.08%), Query Frame = 1
Query: 346 GDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAG-AGWGPGGSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSP-VSAPTHDGNLQK------ILAELEALKADKEK 984
G + G AL+LMSG+VPL+GGL G AL+AGD Y IT +APD VECC LAR LAL+LTDGL + AT D + + AG +G G G ++ +SEE V ++ +EEV YE +D G G+RLGK+HLRK+L A+ CL G+N T K+ +L+ +LP A+ +PA T +VRSP A HD L I AEL ALK+ K+K
Sbjct: 282 GGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGAD---MMPGDMSEEDVFKYLLEEVTAYERNDHG---GKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDK 504
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 140 bits (354), Expect = 2.500e-33 Identity = 100/229 (43.67%), Postives = 131/229 (57.21%), Query Frame = 1
Query: 346 GDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAG-AGWGPGGSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSP-VSAPTHDGNLQK------ILAELEALKADKEK 984
G + G AL+LMS +VPL+GGL G AL+AGD Y IT +APD VECC LAR LAL+LTDGL + AT D + + AG +G G G ++ +SEE V ++ +EEV E +D G G+RLGKRHLRK+L A+ CL G+N T K+ +L+ +LP A+ +PA T +VRSP A HD L I AEL ALK+ K+K
Sbjct: 477 GGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGAD---MMPGDMSEEDVFKYLLEEVTADERNDHG---GKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDK 699
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 138 bits (347), Expect = 2.100e-32 Identity = 102/227 (44.93%), Postives = 131/227 (57.71%), Query Frame = 1
Query: 346 GDTVQAGTALQLMSGSVPLVGGLAGFTGAALKAGDCY--------ITDLAPDAVECCKLARTLALRLTDGLPDGPIATSRDAGEQCTHGAAGAGWGPGGSKFGVLTDAVSEEAVMEWFIEEVANYEPSDSGESAGRRLGKRHLRKILTAVGRDCLQGANDTGAKVNVLVSAVLPGANIRPAETSSASAGGLVRSP-VSAPTHDGNLQK------ILAELEALKADKE 981
G +AG A++LMS +VP+VGGL G AL+AGD Y IT +A DAV+CC LAR LAL+LTDGL + AT+ +A E AG G + +SEE V E+ +EEVA+Y+ +D G G RLGK+HLRK+L A+ R L G+N T K+ VLV +LP A+ A T S +VRSP V P HDG L + A LEALK D+E
Sbjct: 527 GGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGAD-----MTPGDMSEEDVFEYLLEEVASYKRNDHG---GVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRE 745 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8129.16280.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8129.16280.1 >prot_E_fasciculatus_S2_contig8129.16280.1 ID=prot_E_fasciculatus_S2_contig8129.16280.1|Name=mRNA_E_fasciculatus_S2_contig8129.16280.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=214bp MSGSVPLVGGLAGFTGAALKAGDCYITDLAPDAVECCKLARTLALRLTDGback to top mRNA from alignment at E_fasciculatus_S2_contig8129:1162..5135- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8129.16280.1 ID=mRNA_E_fasciculatus_S2_contig8129.16280.1|Name=mRNA_E_fasciculatus_S2_contig8129.16280.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3974bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:1162..5135- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8129:1162..5135- >mRNA_E_fasciculatus_S2_contig8129.16280.1 ID=mRNA_E_fasciculatus_S2_contig8129.16280.1|Name=mRNA_E_fasciculatus_S2_contig8129.16280.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=642bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:1162..5135- (Ectocarpus fasciculatus EfasUO2)back to top |