mRNA_E_fasciculatus_S2_contig8123.16278.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8123.16278.1
Unique NamemRNA_E_fasciculatus_S2_contig8123.16278.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8123.16278.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8123contigE_fasciculatus_S2_contig8123:3970..5936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size308
Hectar predicted targeting categoryother localisation
Exons3
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842473.940055-CDS-E_fasciculatus_S2_contig8123:3969..40081696842473.940055-CDS-E_fasciculatus_S2_contig8123:3969..4008Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8123 3970..4008 +
1696842473.9508224-CDS-E_fasciculatus_S2_contig8123:4928..51161696842473.9508224-CDS-E_fasciculatus_S2_contig8123:4928..5116Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8123 4929..5116 +
1696842473.963232-CDS-E_fasciculatus_S2_contig8123:5857..59361696842473.963232-CDS-E_fasciculatus_S2_contig8123:5857..5936Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8123 5858..5936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8123.16278.1prot_E_fasciculatus_S2_contig8123.16278.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8123 3970..5936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8123.16278.1

>prot_E_fasciculatus_S2_contig8123.16278.1 ID=prot_E_fasciculatus_S2_contig8123.16278.1|Name=mRNA_E_fasciculatus_S2_contig8123.16278.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
LCTTCVVFFSNQEQRELSPTRKRGLAAGGAGRGAAEGLVELGLRAGPPAP
AREGEQQAVQDVKAERAVEAVDRAKRCDICFLTAVYPLRASAPTSSVHTC
VM
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mRNA from alignment at E_fasciculatus_S2_contig8123:3970..5936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8123.16278.1 ID=mRNA_E_fasciculatus_S2_contig8123.16278.1|Name=mRNA_E_fasciculatus_S2_contig8123.16278.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1967bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8123:3970..5936+ (Ectocarpus fasciculatus EfasUO2)
CTGTGCACTACGTGTGTTGTATTTTTCAGCAACCAGGAGGTGAGAAAGAG
CGGAGAGCGAGGCGACCAAAGTGTACTTCAGCAGGGGTACACTGCCTGTA
ATGTTGCCGCCGGGGGGTTTATAGAGAGAGAAAAGCAGAGAGGAGCGATA
GCGGCGGGCACCGGCCGCTGCTTTGTTTCTCAGCTTGCACTGCTACTGCT
GTGCTGTTGTATTGTAGTGCTGGCTGTTCTGCTGTTGAAAATCTGCGCAG
AAAACGCGAGCAGACCGAGCAGCCACCCTGCTCCCCAGAGGATGCCTGCG
TCTTCGTGTACTTGCCACAACAAGCAACGGCCGTCTGGGACTACTGTTGC
TGTACGGCAGCCGTTGTGTGTCTCTTTCCACAATAGTTTAGGGTGCATTG
CGTCCCCGAACACAACGAATTGCCCATCACTTCCCTCGGTCCGTTTGGAT
AACCCAGCAGTAGTCTCGTTCCGTTCTGGCCGCTGCTTTCTGCGTACAAG
TACAATGCATACGCCCTCTGTTCCGTGTACATGCATGCGAACGCCGCAAC
TCTGGGCCGTTGCTGCTGGTATTTATTGATATGCGGCATCAAGCAGGCAC
TGCTGTTTAGCTGCAGGCGTTGCTCATTGTGGCCACACTTTCTTTCTGTG
TTGCTGCCGTACAGCAGTACCCGTGCGGAGCAAACAAAAAGACGTCTGCA
GCCAGGCGTAGGTTGCGCTGTGTGCTTGCTCCTTGTGCTCGCTTACTGGT
ACGTCCATGACTACGGATGGCGTGGGCTGCTGCGGCTGCTGCCAGGGGCG
GCGGCGGCGGCGGCGCAGACCGAAAACAAAAAAACGAACACGAGTCTCCA
CGAAAAAGCAAGCGTAAACGAAGAAACGAACGACCCCCCGCTCGCTCCTC
AACCTGACCGCCGCCGCCGCCGCCCGTGCCCCCCCTTTGTGGTTTGCCCC
CCCCAAAAGCAACGGGAGCTTTCACCAACACGAAAGCGGGGGCTGGCAGC
GGGAGGGGCGGGGCGTGGAGCAGCGGAGGGGCTGGTTGAACTAGGTTTGA
GGGCAGGGCCTCCGGCCCCAGCTCGAGAGGGGGAACAACAGGCGGTGCAG
GACGTGAAGGCGGAAAGGGCGGTTGAGGCCGTGGATAGGGCCAAACGGTA
AGCAATGCGCGACACCTTGCACCGCAGGAGGGGGGTTGTGCACGAGAAGA
ATTCCCTGTAGTTTTCCCTGTCCTGTGTATGGTTGTAGTTGTGTACGAAA
AAGAAGACACTGAAAAGCGAAAGGTCGCCACTCTACATGTTTTGAAAATA
TACACACACGTAATGTTTTTGCTGTAGCACACGGCTCATCCCACGGTAAA
TGGGGTGTGACTGTCGCCATTACATAGGACGAAACACACAACAACACACC
ACTTTTGTACGGCAGTAGTACTGGCCGTATTGCTGCACAAAAGTCTGATC
AGTCGACGTCTCAAGACAGAGTAGGCACCCTACACCCCGGAGAAAACCCC
TCCCTTCGTGTTGATGCCACTTCAAGATACGGGCAGATGGTACTAGCGTT
GCTGTACCGCAGCAATCTCATTTCACTGAATATTCAAGTCCATTGCGTCC
CCGCATACAATACGTCGCCTTTTTTTGTAAGACCTCTTACTAATGCAGAA
CCACAGCAGCAACCTTGTTGTGGTCGCTGCCCGCATAGATGTCCTCCTTC
TGCCTGTGTACGCGCCGCACCTCGTGTTTATTCTTCACCAACTGCTGTTT
CGTGTAAACACATAGCTAGCTCTCTCCGATAAGACTCGAGGCAAGACGGG
AAGGTTGTATCGAGTCTCGTGCAAAGCTGTCTTTCCATTTGACCTTGTGG
CGAACAACTTCTTCTCTTCTGCTGACCGTGATCATCAGGTGCGACATTTG
CTTCTTGACAGCAGTGTATCCGTTGAGAGCTTCCGCACCAACCAGTTCTG
TACATACATGTGTGATG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8123:3970..5936+

>mRNA_E_fasciculatus_S2_contig8123.16278.1 ID=mRNA_E_fasciculatus_S2_contig8123.16278.1|Name=mRNA_E_fasciculatus_S2_contig8123.16278.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8123:3970..5936+ (Ectocarpus fasciculatus EfasUO2)
CTGTGCACTACGTGTGTTGTATTTTTCAGCAACCAGGAGCAACGGGAGCT
TTCACCAACACGAAAGCGGGGGCTGGCAGCGGGAGGGGCGGGGCGTGGAG
CAGCGGAGGGGCTGGTTGAACTAGGTTTGAGGGCAGGGCCTCCGGCCCCA
GCTCGAGAGGGGGAACAACAGGCGGTGCAGGACGTGAAGGCGGAAAGGGC
GGTTGAGGCCGTGGATAGGGCCAAACGGTGCGACATTTGCTTCTTGACAG
CAGTGTATCCGTTGAGAGCTTCCGCACCAACCAGTTCTGTACATACATGT
GTGATG
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