mRNA_E_fasciculatus_S2_contig8116.16273.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8116.16273.1
Unique NamemRNA_E_fasciculatus_S2_contig8116.16273.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 7.850e-74
Identity = 257/311 (82.64%), Postives = 267/311 (85.85%), Query Frame = -1 
Query:  265 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAV-APAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEADLFIVDGGFNRAVGAVAWPPKLRRLEFGDYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEQEADWLKXXXXXXXXXXXXXXXXXXXXXXXXXEELKLRVDGQEYGISLAGVEWPTGLKKMTVDKTLWDKHSAAFPVGVEWDVFFHH 1194
            ASLPFCLACRDSVTLCL  DD+IP RLLA    +EAV APAGP Q GR+RVPRF AREVTWHR+S  ELSA IYALAE D FI+DGGFNRA+GAVAWP KLRRLEFGDY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++QEADWLK                         EEL LRVDGQEYG+SLAGVEWPTGLKKMTVDKTLWDKHSAAFP+GVEWDVFFHH
Sbjct:   58 ASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGGFNRAIGAVAWPRKLRRLEFGDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDQEADWLKSLEYLRLGRWFNQSLHGIGRWAPDLEELNLRVDGQEYGLSLAGVEWPTGLKKMTVDKTLWDKHSAAFPLGVEWDVFFHH 368
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BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-14
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = -1 
Query:  880 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAVAPAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEADLFIVDGGFNRAVGAVAWPPKLRRLEF 1194
            ASL FC+ACR+   + L  D  IP  LLA   A     P  P++   TRVPR RAR VTW+ R+ AEL  PI+A+ + D     G F+ ++ AV WP +L+ +EF
Sbjct:   41 ASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAP----PPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEF 141
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BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.860e-12
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = -1 
Query:  871 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAVAPAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEADLFIVDGGFNRAVGAVAWPPKLRRLEFGDY 1194
            ASL FC+ACR   TL LI D  IP  LLA         P  P++  R RVPR RAR VTW+  + AEL +PI+AL + D       F  ++ AV WP +L  + F ++
Sbjct:   63 ASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGP----PQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNF 166
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BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.680e-10
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = -1 
Query:  883 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAVAPAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEADLFIVDGGFNRAVGAVAWPPKLRRLE 1194
            ASL FC+ACR+  TL L  D   P RLLA   A     P  P++   TRVPR RAR VTW   + A L   IY++ +AD       F  ++ AVAWP +L+ +E
Sbjct:   39 ASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAP----PPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVE 138
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-10
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = -1 
Query:  895 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAVAPAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEADLFIVDGGFNRAVGAVAWPPKL 1194
            ASL  C ACRD+  L L  + + PLRLLA      A +P+   + G TRVPR RAREV+W   S   LS+ IYALA A +F      N  + AV WP  L
Sbjct:   59 ASLQLCEACRDAAALHLRVNTSTPLRLLA-----PADSPSDGSEEG-TRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.030e-9
Identity = 42/79 (53.16%), Postives = 47/79 (59.49%), Query Frame = -1 
Query:  958 ASLPFCLACRDSVTLCLIADDNIPLRLLAGGSADEAVAPAGPRQRGRTRVPRFRAREVTWHRRSFAELSAPIYALAEAD 1194
            ASL FC+ACR+  TL L  D  IP RLLA   A     P  P    RTRVPR RAR VTW  R  AELS PI+A+ + D
Sbjct:  140 ASLEFCVACRNYQTLHLKVDAQIPRRLLARADAP----PPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVD 214
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8116.16273.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized7.850e-7482.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.350e-1443.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.860e-1242.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.680e-1043.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.100e-1046.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.030e-953.16protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8116contigE_fasciculatus_S2_contig8116:577..1770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1194
Hectar predicted targeting categoryother localisation
Exons1
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842472.8487284-UTR-E_fasciculatus_S2_contig8116:576..8881696842472.8487284-UTR-E_fasciculatus_S2_contig8116:576..888Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8116 577..888 +
1696842472.8819664-UTR-E_fasciculatus_S2_contig8116:1533..17701696842472.8819664-UTR-E_fasciculatus_S2_contig8116:1533..1770Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8116 1534..1770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842472.8691425-CDS-E_fasciculatus_S2_contig8116:888..15331696842472.8691425-CDS-E_fasciculatus_S2_contig8116:888..1533Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8116 889..1533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8116.16273.1prot_E_fasciculatus_S2_contig8116.16273.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8116 889..1533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8116.16273.1

>prot_E_fasciculatus_S2_contig8116.16273.1 ID=prot_E_fasciculatus_S2_contig8116.16273.1|Name=mRNA_E_fasciculatus_S2_contig8116.16273.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=215bp
MLVPKGLVNRHLLEPCRPLHPGEGNTILLPIYPKLQLFEGRSPPSYPMQR
LVEPAAQGEILERLEPISFLLQGMVKVIPESQLFQRGRPGDSLNRLVKLQ
PERELPQGCRPESSFDRLVELAAERQLLQGRRPHYTLDTLVEVSQERELL
QRTRPRHVFNALVEVTPEGELFQRRRPPCPRHALIKVVPELEPPELGWPR
HGTNGAVETPIDDK*
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mRNA from alignment at E_fasciculatus_S2_contig8116:577..1770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8116.16273.1 ID=mRNA_E_fasciculatus_S2_contig8116.16273.1|Name=mRNA_E_fasciculatus_S2_contig8116.16273.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1194bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8116:577..1770+ (Ectocarpus fasciculatus EfasUO2)
CACATCAGGAACGAAACAACACGAATAGGAGGCTGGTCAACGACGATTCT
TCTTGTGCGTGTGGGCGCTCTACTCGTATTGCAAGCTGATCTAGGGGCCG
CTATCAAGCCGACGCATGCTTGGCTAGCTGCCAAGACTACGGGAAACAAA
GGATTCTAGCACATCACTGCTACTGTGTGCATATTCTGTACGTATGTCGT
CACATATTGCCCCTTCTCAACAACACGACACACTTTGCAAACGGCGGAGC
TTACACACGTTTTAGTGGTGAAAGAAGACGTCCCACTCGACTCCCACGGG
AAACGCCGCGGAATGCTTGTCCCAAAGGGTCTTGTCAACCGTCATCTTCT
TGAGCCCTGTAGGCCACTCCACCCCGGCGAGGGAAATACCATACTCCTGC
CCATCTACCCGAAGCTTCAGCTCTTCGAGGGCAGGAGCCCACCGTCCTAT
CCCATGCAGCGATTGGTTGAACCAGCGGCCCAAGGAGAGATACTCGAGAG
ACTTGAGCCAATCAGCTTCTTGCTCCAGGGGATGGTCAAAGTCATCCCCG
AAAGCCAGCTCTTTCAGCGAGGACGGCCAGGCGACTCTCTGAACAGGCTG
GTTAAACTTCAGCCCGAACGTGAGCTGCCTCAGGGATGCCGGCCAGAGAG
CTCCTTCGACCGGCTGGTCGAACTCGCGGCCGAACGTCAGCTGCTGCAGG
GACGAAGGCCACATTACACCCTCGATACTCTGGTTGAAGTTTCCCAAGAA
CGCGAGCTCCTGCAGCGAACTCGGCCACGACACGTCTTCAACGCTCTGGT
TGAAGTTACACCCGAAGGTGAGCTGTTCCAGCGACGCCGGCCACCTTGCC
CCCGCCATGCTCTGATTAAAGTAGTCCCCGAACTCGAGCCGCCTGAGCTT
GGGTGGCCACGCCACGGCACCAACGGCGCGGTTGAAACCCCCATCGACGA
TAAATAAGTCAGCTTCTGCAAGGGCGTAGATCGGGGCACTCAGCTCAGCG
AACGACCGTCGGTGCCACGTCACCTCGCGGGCTCGAAACCGCGGCACCCG
CGTACGGCCACGCTGGCGGGGACCGGCGGGAGCGACGGCTTCATCAGCGC
TGCCACCGGCGAGAAGTCGGAGAGGGATGTTGTCGTCGGCTATAAGGCAG
AGGGTTACCGAGTCCCGGCAGGCCAGGCAGAACGGCAGCGACGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8116:577..1770+

>mRNA_E_fasciculatus_S2_contig8116.16273.1 ID=mRNA_E_fasciculatus_S2_contig8116.16273.1|Name=mRNA_E_fasciculatus_S2_contig8116.16273.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=645bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8116:577..1770+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGTCCCAAAGGGTCTTGTCAACCGTCATCTTCTTGAGCCCTGTAG
GCCACTCCACCCCGGCGAGGGAAATACCATACTCCTGCCCATCTACCCGA
AGCTTCAGCTCTTCGAGGGCAGGAGCCCACCGTCCTATCCCATGCAGCGA
TTGGTTGAACCAGCGGCCCAAGGAGAGATACTCGAGAGACTTGAGCCAAT
CAGCTTCTTGCTCCAGGGGATGGTCAAAGTCATCCCCGAAAGCCAGCTCT
TTCAGCGAGGACGGCCAGGCGACTCTCTGAACAGGCTGGTTAAACTTCAG
CCCGAACGTGAGCTGCCTCAGGGATGCCGGCCAGAGAGCTCCTTCGACCG
GCTGGTCGAACTCGCGGCCGAACGTCAGCTGCTGCAGGGACGAAGGCCAC
ATTACACCCTCGATACTCTGGTTGAAGTTTCCCAAGAACGCGAGCTCCTG
CAGCGAACTCGGCCACGACACGTCTTCAACGCTCTGGTTGAAGTTACACC
CGAAGGTGAGCTGTTCCAGCGACGCCGGCCACCTTGCCCCCGCCATGCTC
TGATTAAAGTAGTCCCCGAACTCGAGCCGCCTGAGCTTGGGTGGCCACGC
CACGGCACCAACGGCGCGGTTGAAACCCCCATCGACGATAAATAA
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