mRNA_E_fasciculatus_S2_contig8100.16262.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8100.16262.1
Unique NamemRNA_E_fasciculatus_S2_contig8100.16262.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8100.16262.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8100contigE_fasciculatus_S2_contig8100:3122..6679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size708
Hectar predicted targeting categoryother localisation
Exons5
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842471.574625-CDS-E_fasciculatus_S2_contig8100:3121..33221696842471.574625-CDS-E_fasciculatus_S2_contig8100:3121..3322Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8100 3122..3322 -
1696842471.5864506-CDS-E_fasciculatus_S2_contig8100:4022..41131696842471.5864506-CDS-E_fasciculatus_S2_contig8100:4022..4113Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8100 4023..4113 -
1696842471.5975764-CDS-E_fasciculatus_S2_contig8100:4498..46611696842471.5975764-CDS-E_fasciculatus_S2_contig8100:4498..4661Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8100 4499..4661 -
1696842471.6086965-CDS-E_fasciculatus_S2_contig8100:4884..50291696842471.6086965-CDS-E_fasciculatus_S2_contig8100:4884..5029Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8100 4885..5029 -
1696842471.6271694-CDS-E_fasciculatus_S2_contig8100:6571..66791696842471.6271694-CDS-E_fasciculatus_S2_contig8100:6571..6679Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8100 6572..6679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8100.16262.1prot_E_fasciculatus_S2_contig8100.16262.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8100 3122..6679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8100.16262.1

>prot_E_fasciculatus_S2_contig8100.16262.1 ID=prot_E_fasciculatus_S2_contig8100.16262.1|Name=mRNA_E_fasciculatus_S2_contig8100.16262.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MSISSTYSTLSSEHHGRHDDSDITDGYMSDRNFVLTDDKWAATRIDSETK
SDEYERKRENDVQYHQNQPTGKDDYTGEKLCVMLPACTRLGIAPSSHILS
RLPSSRLSVRHGLLNPASAAALSAGLLGNRCIRSLNLGSNLLRDDSARPL
LEAIFGNPSLTKLDLSRNSLSDDFGVLIAQSLSSPLCALKEVVLAENLFS
DGFVEALSKGMRELEEVHGNSPLKNLDISNNKISSR
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mRNA from alignment at E_fasciculatus_S2_contig8100:3122..6679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8100.16262.1 ID=mRNA_E_fasciculatus_S2_contig8100.16262.1|Name=mRNA_E_fasciculatus_S2_contig8100.16262.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3558bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8100:3122..6679- (Ectocarpus fasciculatus EfasUO2)
ATGTCGATCTCCAGCACATATTCAACCTTGTCTTCGGAGCACCATGGACG
GCATGACGACAGCGACATCACCGATGGTTACATGTCCGACAGGAACTTTG
TGTTGACGGTACGCTCACATGCTTTCTCCCCCCTCCGAGCGAGACGTCTT
GTGTGTACATACTGCTGTGCCTCTGACTTATCTGTGGCTCTCCAGGGGTG
ACAATATAGGGGGCATGACGTTAACCCTCCTATGCTGGAAGCCCAAATGG
GAACACTTCGGGGACACGCAGGCCTATGTGCGGCAACCTGCGATTGCTGC
AACGCCACGCCGAGGGCGTGTTGCGGCAGTTCAGCCCCCCGCCCAGGGGA
CCCCCCCGGGAGGCGTCCCCGGAGGGGCCGCCGGAGGCGATTTCATTGAC
GGTATTCGACGTATTTTTCTTGCAAAAAATCATTCAATAGCAGCATCAAA
TTTTCTACCATAGTCTACGTATATTAATGTTGTGTTTTTCATCTATCTGT
ATTGCGACAGAACATGCCTCGTTTCCCAGCGATGGAGAGACACATGCGAC
AATTTTCTCGCATGCGGCGAGAACCAAGGCCTAGTTTTTTCTCGACTGCC
GGCGAGAGAAAGTGCCGCAATATTTTTTCGCCTTCGACGAAGAATGTGCG
CTCTCCAAGCCTCTGTTGCGGCCCCGTCACGTGTTGCGCATTTATTTTCC
ATTTCGCGGCGGAAATGTTGCGATTCCGCAACGCCGCAACAGCTATCTGG
AACGCTGCAAGTCACCCGTTGTCTGGCAAGGAGCTCAGATTCTTTGGAGG
GACTGTAGCCCCTCGACCAATAATTGACGATCAGTTTTGCGACATTTTCC
GGGGGACTGGGTACGGTAGGAGGGTCATCTTATGCGAAGGTTTAGCGAAG
GTAGTCTACAGTAGTACAGCAGCTCTATAGTACATACCTGCGCCCCTTTT
TACACAACCGCGAGCAAGGTTGTGCGGTTATTTGGATCTCTTGCGCGGTA
TTCCCGGTGGCCAGGTTGTGAGATGGTCGCTGTCGCAAGGGGGCGAGCCC
AAGCAACAAGGATATGCGTATCTTCAGCCATTCTGCGTGCGTACCAACGC
CTCCCCATGTTGTCTCGGAACGAAATTGCGCAAGACCGGGAGAAATGCAT
GTGCACGGGCAACAGCGACGAGCAGTAGTCTATTGCTGTACACACGTGGA
AGTAGAACGTTGAGTGGGAGTCACACAGAGTAGGTACGGCTTCAATGCAA
TTGTGTGGAACTAGGGTGTGTACATTGACTTTGGGTTACCCCGGCTGGTG
CGCCAAACGGGTGCCGAACGTCGTAGAACGGCCTCCAGAACAATGACGAC
GACGCACGTTGGGCTTTGTGCAGGTTGGTCCTGCGTCATCATGTTGCCTG
TGTTCCCTTTAGACACGTGTCACGAACGATGAGCAGAGAGGAGAAATACT
TGGTATATGATGCATAACTGAAGATTGCGAGGCCACCAGGAACCGGTTCT
GAAACATTATAAAGGGTGTCTTCTCCTTCTCAGTATTTATTAAGCCGTTC
CCACATAACAGACGATAAAAAATTGTCTGACTGGGTATGCTTGAAACCCT
TGTTTCCTATGCTCCTCGTACACGCGCCTATTGACACACAAACCATGCAG
GACGACAAGTGGGCAGCGACGAGGATTGATTCAGAAACAAAATCGGATGA
ATATGAGCGGAAACGAGAAAACGATGTCCAGTACCATCAGAATCAACCCA
CTGGGAAAGACGACTATACAGGCGAGAAACTATGCGTCATGCTTCGTTTT
TGTGTGGTCGCCTTGTTGTGAAGGAGAGTGTGAAGTCTTCGAGTGCGAGG
AGAATTCTCCCCAAACCATGCTGGTTACACACCGAGTCATGAGTGGCAGT
TTATGTTGACACTGGTGAGGGAAGAGAGAAAGTCGAGCAGCCGCCTTTGG
CTCAATTCCAACCTGTGCCACCCCCTACATTACGGTGTCGCAATGATATT
GTCGGCTGTGATGCACAGCGGCGTGCACCAGGTTGGGAATCGCTCCGTCT
TCCCACATCTTGTCTAGGCTGCCTTCGAGCCGCTTGAGCGTTCGGCACGG
GCTTCTAAACCCAGCCTCGGCTGCCGCGCTGTCGGCGGGACTACTAGGCA
ATCGCTGCATTCGGTCACTTAATCTCGGCAGGTGCGACATAGGCGATTGG
CCTGGTTGCTCTGGGTTTTCCGTTGGTACAATGATTACTTGTTTCCGTAC
CCATATTCGTGCACTGTTGTTGTCAGCAAGAGAAATATGCCGTTGTCTGA
CCTCGACGCAGCACCTCCTCGTTGGTGCTGCCTGCACAGCTGTTAGAATG
CAACCAACTTGTACGGAAAGTTCGAGCGCACCCCTCAGCCAGTTTAACAC
GATGTTTTGGGAGTTCCCACTGCTTCCAGCATGCACGAAGCGGGCGTTTT
ACCAGATGGGGTCCCCCCAGTCGGGTAGTCTGGGCGTTTGCATGGGTTCC
GTGCTACCTGGCGCACCTCCGCGTTCCGTCATCGAATCGGCTGCGGTCGT
GTCGCAATGCATGCAGCAACTTGCTCCGGGATGATAGCGCTCGCCCCTTG
CTGGAAGCAATCTTTGGAAACCCTTCTTTGACAAAGCTGGATCTCTCCAG
GAACTCGGTGAGCTCGATGGTTGGCTACCCAACGCGTCGATCGACAGGTT
TCTCTCGCGCCTTGGGGGTAGTTTCTTGCAAGGTGCACGCGAATGGGTCA
ATACGAAAGACCTGTGGCTCCTTAGTCCTGCCTATCTCGTCTAAATCCGA
ACTGGGGCTCGAGTGGGTTAAACCTTTCGTCGCGGGAACATGTGTGGGTA
AGGTACTGGACGCGTTCCTTTCTTTTCTCTTGTAATGAAAATATGCATAG
GAGGAGCTGCGGATGCAAAACGATTCGGGTGGGGGTACCTGTGTGTAGTT
GAATGATTGAGGCCTTCTAGAGAGAGAGACATCCACATTCTAAATGTGTC
ATCTCTACATAGTAGGGACGACATGGTTTGCTTGGTTTTCCGTTTATTCA
GGTTGCGCCAGGACTCATGTTGTGAGATGCTGCCGGGCCATGGAATCAAA
GGCAATAATTTATTTCCTATTGGCTCCCCCAGGAAGCAATGACATTGCTT
TGATGCCGAACCGTCGAACCAGAGGTTTTTGTTCATCAAGACTCATCCGC
GAGGAAACCTTGGGATATCTCAATAACTTTATTTCGTTCTACGTGATGGT
TCGTCAAGGTGGTTTGTAGTTATTTCGTGCTAACCCTAACCCTAACCCCT
TACCGAACCGTTCTGTTCCGGCGGTTCCTGTTGTTCTCGACCCTCTTGGT
CGTCCAGCTGAGCGACGATTTCGGAGTACTCATAGCACAAAGCCTTTCTT
CTCCGCTGTGCGCGCTGAAAGAAGTGGTTCTTGCTGAGAACCTTTTTTCC
GATGGATTTGTTGAAGCTCTGAGCAAAGGCATGCGGGAGCTGGAGGAGGT
GCACGGGAACAGCCCCCTGAAGAATCTCGACATCAGCAACAACAAGATTT
CTAGTAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8100:3122..6679-

>mRNA_E_fasciculatus_S2_contig8100.16262.1 ID=mRNA_E_fasciculatus_S2_contig8100.16262.1|Name=mRNA_E_fasciculatus_S2_contig8100.16262.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8100:3122..6679- (Ectocarpus fasciculatus EfasUO2)
ATGTCGATCTCCAGCACATATTCAACCTTGTCTTCGGAGCACCATGGACG
GCATGACGACAGCGACATCACCGATGGTTACATGTCCGACAGGAACTTTG
TGTTGACGGACGACAAGTGGGCAGCGACGAGGATTGATTCAGAAACAAAA
TCGGATGAATATGAGCGGAAACGAGAAAACGATGTCCAGTACCATCAGAA
TCAACCCACTGGGAAAGACGACTATACAGGCGAGAAACTATGCGTCATGC
TTCCGGCGTGCACCAGGTTGGGAATCGCTCCGTCTTCCCACATCTTGTCT
AGGCTGCCTTCGAGCCGCTTGAGCGTTCGGCACGGGCTTCTAAACCCAGC
CTCGGCTGCCGCGCTGTCGGCGGGACTACTAGGCAATCGCTGCATTCGGT
CACTTAATCTCGGCAGCAACTTGCTCCGGGATGATAGCGCTCGCCCCTTG
CTGGAAGCAATCTTTGGAAACCCTTCTTTGACAAAGCTGGATCTCTCCAG
GAACTCGCTGAGCGACGATTTCGGAGTACTCATAGCACAAAGCCTTTCTT
CTCCGCTGTGCGCGCTGAAAGAAGTGGTTCTTGCTGAGAACCTTTTTTCC
GATGGATTTGTTGAAGCTCTGAGCAAAGGCATGCGGGAGCTGGAGGAGGT
GCACGGGAACAGCCCCCTGAAGAATCTCGACATCAGCAACAACAAGATTT
CTAGTAGG
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