mRNA_E_fasciculatus_S2_contig8094.16251.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8094.16251.1
Unique NamemRNA_E_fasciculatus_S2_contig8094.16251.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8094.16251.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8094contigE_fasciculatus_S2_contig8094:1259..3820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1308
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002330.1
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842469.8470654-CDS-E_fasciculatus_S2_contig8094:1258..24341696842469.8470654-CDS-E_fasciculatus_S2_contig8094:1258..2434Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8094 1259..2434 +
1696842469.8605163-CDS-E_fasciculatus_S2_contig8094:3688..38201696842469.8605163-CDS-E_fasciculatus_S2_contig8094:3688..3820Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8094 3689..3820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8094.16251.1prot_E_fasciculatus_S2_contig8094.16251.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8094 1259..3820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8094.16251.1

>prot_E_fasciculatus_S2_contig8094.16251.1 ID=prot_E_fasciculatus_S2_contig8094.16251.1|Name=mRNA_E_fasciculatus_S2_contig8094.16251.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=436bp
MVTYSEAEPRFYRWLRKYRDDRAAHSRARKMHPDPAMLDADLARVVCRMG
ITGCYRKPAELSAATELLLHGARASTEYFQNNELFFNLGEVVDLLECLAG
KDIRHANRAVAAFLEALTASGSAAVLTNRRYVGNGGTELPYFLLRSVVIG
EPWGYNYNNARQRIKLGSPKDRAFRRTCFRMLARMAFLSAERTLSRAGTH
PFMVLLETNRGPMLPFDEFRTHRIVDFPVNQFAVLDVLYLMTFVYRALPW
PRRQYLADVEHAISVSTPPADCIGHSLVEMTMRMMMIVPGFFWEFVVNQS
LWHVLLAYGAGSVGGSRYHLQHQSQDSLGVSSARAGDIARSLSNVFFSNR
QYEANLIRMLKENRLVATWLCGEGRRPLLLDICRQRRRRVVEAVAVGAPS
AFSIAVPELLAFVRGPSVRGKKQRLVAWLESRSEG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8094:1259..3820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8094.16251.1 ID=mRNA_E_fasciculatus_S2_contig8094.16251.1|Name=mRNA_E_fasciculatus_S2_contig8094.16251.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2562bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8094:1259..3820+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGACTTACAGTGAAGCGGAGCCTCGCTTCTATCGGTGGCTTCGGAA
GTACCGCGACGATCGAGCGGCGCACAGCAGGGCTCGAAAGATGCATCCCG
ATCCTGCAATGCTCGATGCTGATCTCGCCCGTGTGGTGTGTCGGATGGGC
ATCACAGGTTGCTACAGGAAGCCTGCCGAGCTTAGTGCAGCGACCGAACT
GCTCTTACATGGTGCGCGTGCCAGCACGGAATATTTCCAGAACAATGAGT
TGTTCTTCAATTTGGGGGAGGTTGTTGATTTACTAGAGTGTCTCGCGGGA
AAGGATATTCGTCATGCAAACCGCGCAGTTGCGGCTTTCTTGGAAGCTCT
CACGGCCAGTGGGTCGGCTGCAGTTTTGACCAACAGGCGCTACGTCGGAA
ACGGGGGAACAGAGCTACCGTACTTCTTGCTTCGGTCGGTGGTGATTGGA
GAACCATGGGGGTACAACTACAACAATGCACGCCAAAGGATCAAGCTTGG
ATCCCCGAAAGACCGCGCCTTTCGTAGAACCTGCTTCCGAATGCTGGCGC
GTATGGCGTTTCTCAGCGCTGAGCGCACCCTGTCGCGCGCGGGCACCCAC
CCGTTCATGGTGCTGCTCGAAACAAACCGTGGGCCAATGCTCCCGTTCGA
TGAATTCCGGACGCACCGCATTGTTGACTTTCCGGTGAATCAGTTCGCGG
TCCTCGATGTGCTCTATCTGATGACCTTCGTGTATCGGGCACTTCCGTGG
CCCCGACGGCAATATCTTGCCGATGTCGAGCATGCGATCAGCGTAAGCAC
GCCGCCCGCGGATTGCATCGGCCACAGTCTCGTGGAAATGACGATGCGCA
TGATGATGATAGTACCGGGCTTCTTCTGGGAGTTCGTCGTCAACCAAAGC
CTATGGCACGTGCTTCTGGCGTACGGCGCTGGAAGCGTCGGGGGTTCCCG
GTACCACCTGCAGCACCAAAGCCAAGACAGTCTTGGTGTCAGCTCCGCAA
GGGCAGGGGACATCGCCCGCAGTCTATCCAACGTGTTCTTCAGCAATCGG
CAGTATGAGGCAAACTTGATACGGATGCTGAAGGAAAATCGCCTCGTGGC
GACGTGGCTTTGCGGCGAGGGTCGGCGCCCCTTGTTACTAGACATATGTC
GGCAACGTCGCCGGCGAGTGGTGGAGGTGAGGAGCAGCCCGAATTACGGT
GGTCAGTAGATCCACGGTTCGTGTAGCCTCCAGTATCTGTTCGAAATGCT
CGTATTAGACGGACCTGTTATCGGAACAAGCACGGTCCATGCCATTGACT
CTCCTTCTGTGCAAAGAGTTTTATCTGTTCATTTGATGTTGCGGAGTTTC
GGAAATCCATTCCAGAAAGTTCACTTCACTTTTTAGCGTAAAGAACCAGT
TTATGGCCGCCATAAAAATGAACTTCCGACCCCAGGAAGATATTTTTAGC
ACAAAGAGCAGCTGGCGTCTGCTAAAGCTGAACTTTTTCAAGTTTGTTCA
GGTGCTTTGGTCAACACCACGCCAGGACGAGTGCTGCTGCACACCCCACC
CCACCAACACATTCCAGCGGTCGGTCATAGAGGTTGCTGCCGGCAGTGGG
AGGACTCCTGCTTCGGTGCCGACAAAGTTCAGATGTGTCAAATTGATGTA
GGGTCAGCTCTACATTTTTGTCACACACCAGCACACACTAGCAGCAGCAG
TGCAACTACACTCTGCATCGATCGCCCAACACCCAACCACTACGAAGATC
CACCGCAAAATCCGAGGGCATCTTGCTGCCTAGACGTTGCTGGCTCTGGC
TAGAAGATTGGCGGAATGTGTGTTGCGAGAGAGCGACGCGCGTGTGGGAG
TGTGTATGTGCTGCCGAGCACACGCTGTCTGGGTGCGTGCGTCCGTCTGT
ATTCCACACCTAAAAAAACGTCGCGTCTTTCTCAGGAGACGCTCACAACG
CTCCACTCAGACCCATCTCGGTTGGTGGCAAGGCACCTCAGAGCTGTGGA
GCACGCAGCGTCGAAGATTTCACCCGAATTCATGCATCTGCTTGGGAGAT
TGGTGACTTGGCCGCGGGTCATGCGGATCAGATCCGCCATGGTGACATCG
TGACGTCACATCGTTAAAAGTAAACTTCGGCGAAATGGGACTGATTCTAG
AAACGGTGTTCTAAGAAGTGAACGTAAACTTTTTCAAGAGGAAAGCTCGA
AGAATATCTATTACGAAAAGTCAGGTTATACGGCCGTGAAGAAGATTTTA
TCGGGGGTGTACCCGGTGCGTCCATCCGATGTTCTTTGTGTATTTAGGCA
ATCTATGGCGATGCACTGCTGTGTACAGAAAAAAGTTCCGGAGATGGAGT
CTTTTCAGGCTACACACATCCAAAGGCCAAGCTACAAGCATTTGTCTGTT
TGACCCTCAATGTTGACGAATGGGATGCAGGCCGTGGCTGTGGGCGCGCC
TTCGGCGTTTTCTATCGCCGTGCCTGAGCTGCTGGCTTTTGTTCGCGGGC
CTAGTGTTCGAGGAAAGAAACAGCGACTTGTCGCATGGTTGGAGTCGAGA
TCTGAAGGCTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8094:1259..3820+

>mRNA_E_fasciculatus_S2_contig8094.16251.1 ID=mRNA_E_fasciculatus_S2_contig8094.16251.1|Name=mRNA_E_fasciculatus_S2_contig8094.16251.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1308bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8094:1259..3820+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGACTTACAGTGAAGCGGAGCCTCGCTTCTATCGGTGGCTTCGGAA
GTACCGCGACGATCGAGCGGCGCACAGCAGGGCTCGAAAGATGCATCCCG
ATCCTGCAATGCTCGATGCTGATCTCGCCCGTGTGGTGTGTCGGATGGGC
ATCACAGGTTGCTACAGGAAGCCTGCCGAGCTTAGTGCAGCGACCGAACT
GCTCTTACATGGTGCGCGTGCCAGCACGGAATATTTCCAGAACAATGAGT
TGTTCTTCAATTTGGGGGAGGTTGTTGATTTACTAGAGTGTCTCGCGGGA
AAGGATATTCGTCATGCAAACCGCGCAGTTGCGGCTTTCTTGGAAGCTCT
CACGGCCAGTGGGTCGGCTGCAGTTTTGACCAACAGGCGCTACGTCGGAA
ACGGGGGAACAGAGCTACCGTACTTCTTGCTTCGGTCGGTGGTGATTGGA
GAACCATGGGGGTACAACTACAACAATGCACGCCAAAGGATCAAGCTTGG
ATCCCCGAAAGACCGCGCCTTTCGTAGAACCTGCTTCCGAATGCTGGCGC
GTATGGCGTTTCTCAGCGCTGAGCGCACCCTGTCGCGCGCGGGCACCCAC
CCGTTCATGGTGCTGCTCGAAACAAACCGTGGGCCAATGCTCCCGTTCGA
TGAATTCCGGACGCACCGCATTGTTGACTTTCCGGTGAATCAGTTCGCGG
TCCTCGATGTGCTCTATCTGATGACCTTCGTGTATCGGGCACTTCCGTGG
CCCCGACGGCAATATCTTGCCGATGTCGAGCATGCGATCAGCGTAAGCAC
GCCGCCCGCGGATTGCATCGGCCACAGTCTCGTGGAAATGACGATGCGCA
TGATGATGATAGTACCGGGCTTCTTCTGGGAGTTCGTCGTCAACCAAAGC
CTATGGCACGTGCTTCTGGCGTACGGCGCTGGAAGCGTCGGGGGTTCCCG
GTACCACCTGCAGCACCAAAGCCAAGACAGTCTTGGTGTCAGCTCCGCAA
GGGCAGGGGACATCGCCCGCAGTCTATCCAACGTGTTCTTCAGCAATCGG
CAGTATGAGGCAAACTTGATACGGATGCTGAAGGAAAATCGCCTCGTGGC
GACGTGGCTTTGCGGCGAGGGTCGGCGCCCCTTGTTACTAGACATATGTC
GGCAACGTCGCCGGCGAGTGGTGGAGGCCGTGGCTGTGGGCGCGCCTTCG
GCGTTTTCTATCGCCGTGCCTGAGCTGCTGGCTTTTGTTCGCGGGCCTAG
TGTTCGAGGAAAGAAACAGCGACTTGTCGCATGGTTGGAGTCGAGATCTG
AAGGCTAG
back to top