mRNA_E_fasciculatus_S2_contig8086.16242.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8086.16242.1
Unique NamemRNA_E_fasciculatus_S2_contig8086.16242.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: VHS (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 5.880e-48
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1
Query:    1 MKDVENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            MKDVE+ACG+MLLSPDWTLNM+IVD+LNREQDPVVLTEVIRILRKKLGSSNT VLSV LTLAETLVKNCHDPVHREIASERFMAAVAK+AR
Sbjct:   23 MKDVESACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNTTVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIAR 113          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: VHS (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTC8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.330e-19
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  D+LL+ DW +NM++VD LNR  +  V  E+IR +RK+L   +T V+ + L L ET+VKNC   VH+E+A+ +FMA +A+VAR
Sbjct:   30 VEKATSDILLAVDWAMNMEVVDALNRSSEQAVKREIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARVAR 117          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: VHS (domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JXW7_PUNGR)

HSP 1 Score: 80.5 bits (197), Expect = 7.860e-17
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW +N++I D LNR  DP    +V++ ++K+LGS N  V  + LTL ET++KNC D VH  +A    +  + K+AR
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMLNR--DPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIAR 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S5C0_PHYPA)

HSP 1 Score: 77.8 bits (190), Expect = 8.550e-17
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DMLL PDW LN+ + D +N E  P    +++R ++K+LG+ N  V  + LT+ ETL+KNC D +H+++A +  +  + K+ +
Sbjct:    7 VEKATSDMLLGPDWALNLDLCDAINNE--PSQAKDIVRAVKKRLGNRNPQVQLLALTILETLIKNCGDSIHQQVAEKDVLHELVKLVK 92          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: Uncharacterized (protein n=10 Tax=Saliceae TaxID=238069 RepID=A0A2K2A7F1_POPTR)

HSP 1 Score: 81.3 bits (199), Expect = 5.910e-16
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW +N++I D  NR  DP    +VI+ ++KKLGS N+ V  + LTL ET++KNC D VH  +A +  +  + K+A+
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMCNR--DPTQAKDVIKGIKKKLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIAK 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: VHS (domain-containing protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314UR91_PRUYE)

HSP 1 Score: 77.8 bits (190), Expect = 7.070e-16
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW +N++I D  N   DPV   +V++ ++K+LGS N+ V  + LTL ET++KNC D VH  +A +  +  + K+ +
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMCNH--DPVQAKDVVKGIKKRLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVK 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: TOM1-like (protein 9 n=4 Tax=Punica granatum TaxID=22663 RepID=A0A6P8EI63_PUNGR)

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW +N++I D LNR  DP    +V++ ++K+LGS N  V  + LTL ET++KNC D VH  +A    +  + K+AR
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMLNR--DPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIAR 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: VHS (domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YSS5_NELNU)

HSP 1 Score: 77.8 bits (190), Expect = 1.420e-15
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW +N++I D LN   DP    +V++ L+K+LGS N  V  + LTL ETL+KNC D VH  +A +  +  + K+ +
Sbjct:    6 VERATSDMLIGPDWAMNIEICDILNH--DPGQAKDVVKGLKKRLGSKNPKVQLLALTLLETLIKNCGDIVHMHVAEKDILHEMVKIVK 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: ENTH/VHS/GAT (family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PLP5_STRAF)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-15
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVAR 273
            VE A  DML+ PDW LN++I D  NR  DP    +VIR ++K+LGS N  V  + LTL ET+VKNC D VH  +A +     + K+ R
Sbjct:    6 VERATSDMLIGPDWALNIEICDVCNR--DPAQAKDVIRGIKKRLGSRNPKVQLLALTLLETIVKNCGDIVHMHVAEKDLPHEMVKIVR 91          
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D385_9MAGN)

HSP 1 Score: 79.7 bits (195), Expect = 2.050e-15
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   10 VENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSSNTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKV 267
            VE A  DML+ PDW LN++I D LNR  DP    +V++ L+K++GS N  V  + LTL ET++KNC D VH  +A  + +  + K+
Sbjct:    6 VEGATSDMLIGPDWALNLEICDILNR--DPGQAMDVVKGLKKRIGSKNPKVQLLALTLLETMIKNCGDIVHMHVAERKILHEMLKI 89          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8086.16242.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
VHS5.880e-4892.31domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
VHS1.330e-1948.86domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
VHS7.860e-1744.32domain-containing protein n=1 Tax=Punica granatum ... [more]
Predicted8.550e-1738.64protein n=1 Tax=Physcomitrium patens TaxID=3218 Re... [more]
Uncharacterized5.910e-1644.32protein n=10 Tax=Saliceae TaxID=238069 RepID=A0A2K... [more]
VHS7.070e-1640.91domain-containing protein n=1 Tax=Prunus yedoensis... [more]
TOM1-like1.100e-1544.32protein 9 n=4 Tax=Punica granatum TaxID=22663 RepI... [more]
VHS1.420e-1543.18domain-containing protein n=1 Tax=Nelumbo nucifera... [more]
ENTH/VHS/GAT2.040e-1546.59family protein n=1 Tax=Striga asiatica TaxID=4170 ... [more]
Uncharacterized2.050e-1544.19protein n=1 Tax=Tetracentron sinense TaxID=13715 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8086contigE_fasciculatus_S2_contig8086:6138..6879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score173.3
Seed ortholog evalue5.2e-41
Seed eggNOG ortholog2880.D7FWE4
Preferred nameGGA2
Model size276
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
Exons2
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-09_003990.1
Cds size276
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.934454-CDS-E_fasciculatus_S2_contig8086:6137..62411696842468.934454-CDS-E_fasciculatus_S2_contig8086:6137..6241Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8086 6138..6241 +
1696842468.9468257-CDS-E_fasciculatus_S2_contig8086:6707..68791696842468.9468257-CDS-E_fasciculatus_S2_contig8086:6707..6879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8086 6708..6879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8086.16242.1prot_E_fasciculatus_S2_contig8086.16242.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8086 6138..6879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8086.16242.1

>prot_E_fasciculatus_S2_contig8086.16242.1 ID=prot_E_fasciculatus_S2_contig8086.16242.1|Name=mRNA_E_fasciculatus_S2_contig8086.16242.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
MKDVENACGDMLLSPDWTLNMKIVDELNREQDPVVLTEVIRILRKKLGSS
NTMVLSVGLTLAETLVKNCHDPVHREIASERFMAAVAKVARV
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mRNA from alignment at E_fasciculatus_S2_contig8086:6138..6879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8086.16242.1 ID=mRNA_E_fasciculatus_S2_contig8086.16242.1|Name=mRNA_E_fasciculatus_S2_contig8086.16242.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=742bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8086:6138..6879+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGATGTCGAGAATGCCTGCGGCGATATGCTCCTCTCGCCGGACTG GACGCTCAACATGAAGATCGTCGACGAGCTTAACCGCGAGCAGGACCCCG TCGTGTGAGTGCAGATTAAGGAAATCGCGCGGTAAGAGTAAGATTGTGTC TCGCGTTCTGATTGGCTGCGTCCGTGTCGTGTTGCTGGCTCTATCTTCTC CCTCGCGTGCACATTTTTCTATATCTTGCTAGTTTTCAGTGAGTGTGTTT AAATCAGTTGCATCGACCCCGCTTACCGGCTGACCAGTGAAAAGACACCA GCCTCAGTGCGGTTGAAAACCCAACGTGCTTCCGAAGTATGTGTGTGTGT CATGGTCCTGTCCGTATACGTTTGACGCGCCAGCCAGGGAAATTCCAAAA CGTACCATTGCGAATGGGGCGCACAGACTGCAAGCCCATGCCAAAGCTAC GCTGTAGATTTATCTGTGTCACCCGTGTCTTCCTGCGTGATCATGATCAT GAGTTGAGGTTGCCCAACGACGGACGCCCCCCCCCCTCCCCCGCCCGCCA ACTCTCTCTTCGTTTCAAAGGCTGACCGAAGTGATTCGAATCCTGCGCAA GAAGCTAGGGTCAAGCAACACGATGGTTTTGTCCGTGGGGCTAACGCTAG CCGAGACGCTCGTGAAGAACTGCCACGACCCAGTGCACAGAGAGATCGCG TCGGAGAGGTTCATGGCTGCTGTGGCCAAAGTTGCAAGGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8086:6138..6879+

>mRNA_E_fasciculatus_S2_contig8086.16242.1 ID=mRNA_E_fasciculatus_S2_contig8086.16242.1|Name=mRNA_E_fasciculatus_S2_contig8086.16242.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8086:6138..6879+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGATGTCGAGAATGCCTGCGGCGATATGCTCCTCTCGCCGGACTG
GACGCTCAACATGAAGATCGTCGACGAGCTTAACCGCGAGCAGGACCCCG
TCGTGCTGACCGAAGTGATTCGAATCCTGCGCAAGAAGCTAGGGTCAAGC
AACACGATGGTTTTGTCCGTGGGGCTAACGCTAGCCGAGACGCTCGTGAA
GAACTGCCACGACCCAGTGCACAGAGAGATCGCGTCGGAGAGGTTCATGG
CTGCTGTGGCCAAAGTTGCAAGGGTG
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