mRNA_E_fasciculatus_S2_contig8083.16240.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8083.16240.1
Unique NamemRNA_E_fasciculatus_S2_contig8083.16240.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Match: PHD (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH56_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 7.490e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG 252
            ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG
Sbjct:  453 ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG 536
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BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Match: PHD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.520e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG 252
            ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG
Sbjct:  385 ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEWELKGRDDAASG 468
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BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Match: PHD-type (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCI0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.220e-8
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:   10 EEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILE 216
            +E   L    L  +K  H+  C  C +GG ++CC+ C LVYH  CL   PG++  F C  C+EEA  L+
Sbjct:  512 DEGAELVMHRLRPFKGTHNSLCDVCLDGGELICCETCSLVYHTCCLHSPPGMSEAFYCDRCREEAYRLD 580
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BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M658_BLAHO)

HSP 1 Score: 50.4 bits (119), Expect = 4.370e-6
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   40 LPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTS----LFACSDCKEEA 204
            L R+  +H   C  C + G++LCCD+C L YHP CL  +P L S     +AC  C+  A
Sbjct:    3 LQRYYGKHKPMCAICSQKGLLLCCDYCSLAYHPECL--SPPLKSQPQDFWACPRCEYHA 59
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BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Match: bromodomain (adjacent to zinc finger domain protein 1A isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0819DD)

HSP 1 Score: 50.1 bits (118), Expect = 4.230e-5
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   73 CRRCGEGGIVLCCDFCHLVYHPRCLEVTPGLTSL----FACSDCKEEAA 207
            C  C EGG V+CCD C ++YHP CL+  P L  +    + CSDCK + A
Sbjct: 1155 CEVCKEGGRVICCDSCSIMYHPECLD--PPLRRVPRGTWHCSDCKRKQA 1201
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8083.16240.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
PHD7.490e-52100.00domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
PHD7.520e-52100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PHD-type3.220e-839.13domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
PHD-type4.370e-640.68domain-containing protein n=1 Tax=Blastocystis hom... [more]
bromodomain4.230e-546.94adjacent to zinc finger domain protein 1A isoform ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8083contigE_fasciculatus_S2_contig8083:3738..5766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.783305-CDS-E_fasciculatus_S2_contig8083:3737..37911696842468.783305-CDS-E_fasciculatus_S2_contig8083:3737..3791Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8083 3738..3791 -
1696842468.79408-CDS-E_fasciculatus_S2_contig8083:4990..51081696842468.79408-CDS-E_fasciculatus_S2_contig8083:4990..5108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8083 4991..5108 -
1696842468.8049042-CDS-E_fasciculatus_S2_contig8083:5686..57661696842468.8049042-CDS-E_fasciculatus_S2_contig8083:5686..5766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8083 5687..5766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8083.16240.1prot_E_fasciculatus_S2_contig8083.16240.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8083 3738..5766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8083.16240.1

>prot_E_fasciculatus_S2_contig8083.16240.1 ID=prot_E_fasciculatus_S2_contig8083.16240.1|Name=mRNA_E_fasciculatus_S2_contig8083.16240.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
ELEEEEVALAAKMLPRWKQRHDVDCRRCGEGGIVLCCDFCHLVYHPRCLE
VTPGLTSLFACSDCKEEAAILEWELKGRDDAASG
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mRNA from alignment at E_fasciculatus_S2_contig8083:3738..5766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8083.16240.1 ID=mRNA_E_fasciculatus_S2_contig8083.16240.1|Name=mRNA_E_fasciculatus_S2_contig8083.16240.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2029bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8083:3738..5766- (Ectocarpus fasciculatus EfasUO2)
GAGCTAGAGGAAGAGGAGGTAGCGCTGGCCGCCAAGATGCTCCCGCGCTG
GAAGCAGCGCCACGATGTAGACTGCCGAAGGTACGAAAAGAAGAATCTCC
TCGACCACGTCGATGTTTGGAGAGACTCCAGGAAAAAGTGTTTTCAATGC
ACATGTGACGATTTACTGAACAAGGCATTCTTGTGCAGCCTTCATACAGG
TTACAGGAAGAAGGAGTGGGGGGGGGTGTTCTGTTTTGGTGAAATCGGCA
CGGGGCCCCCCGAAGAACGAACATTCAAGTTCACAAGTTGGTGCTGAAAC
GTGATCTCCGAATTACCTCTCTCTTGGCAGCAGCAGACGACGTGTCGATA
ATTTTAGAGAAGCCCGTATTTGGGCGTTCCAATGTACGTGTAACGATTTA
GTAAACACCATATTCTTACAATATGTACTGTACGGCCTTCAAAGGTTACT
AGAAGAAGGATTTATCGACGATTCGAGAGACGCCAAAAAAGGCGGTTCAA
TGTCCGTTTGACGATATACTGACACCGAAGTCTTCTGTACGGCTTTCACC
GTGCGACCTTCACCGTGGGAAGGAAGCGTCGCGGATGGTGGCAGGGTTTT
GACCGGTAGTATTTGCTGCTATTGTGCTATTGTTGCTGCTGCTCCGAAAC
GCCACCAGATGCGGGGAAGGGGGCATTGTCTTATGCTGCGACTTCTGCCA
CCTGGTCTACCACCCGAGATGTCTGGAGGTCACCCCGGGCCTGACCAGCC
TCTTCGCGTGCTCCGACTGCAAGGAGGTGATTCAGCGGGACCCCCCCCAC
ACACACATTTGCTACGGTGTTCGACACAAACGTCGAAATACTGTATACTG
TAGGTGACATTTCGGAAGATACCATACCACACCCCGTGAACTGGTTTTCA
AGGCTCGATTTCTCCACCACAGAATGAGTGGGGACAGCCGAAAACGACGG
CGAGCGTGGAGAGATTTCCGAAAATGTATGCATATAATTTCATTTATGCA
TCCTCTTCGTCGTGGAGTAATCGAGCTAGCTTTGAAAATCGGTCCAGGGG
GTGTGGTATCTTGTGTCACACACCTCCCGCCATCTGGGCGGGGGTTGAGA
TCGGCTGTATAGATGGTGTTCCTTGAAGTGTCGTTACACCAGTGTTTTTC
GTTACTCTGATGACCGGGCTCTTTTCGTCTGTTTGGACTCCGAGGAGGTG
GGGAGACTCTAAGCGGAAACCCTAGCAGAGGAAGGGTTTTGTGTTGTTTG
CGTTGTTCGCTCTGATGCTGGTGTACCTTTTCGGTTGCTTGTGATGCTCG
TGTACCTCTTTGGTTGCTTGTGGTGTTGGTGTACCTTTTTAGAGTCTTGT
TATGCTGGTGTACCTCTTTGGTTGCTTGTGATGCTGGTTTCCTTTTTTGT
GACGAAGGGACGTGTGATGCGGTCTATGGCTTAGCGGCGGCCTTGTACAA
TCCTGGTTAGGACGGCCCTGGCAAACGCAAAAAGGGGACGTATGCGTTTG
ATATGTACCATCATGTTTTATTTTTCCCCACATGAAACAATACCCTTGAC
GCTGGAAGTTGTTGGTGTCTCCTACCAAGGGAAAGCGTGTTGCTACAAGT
ATGCTTCATCATCTGGAGAGAAGGATGATACGTGGTCAACGACCAAAGGC
GAGCAACACACGGGTACGTCCCTCCCTCCCAAGGACCGCGGCAAAACATG
ATGGTGAGACTCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCGGCTAACCC
CCCCCCCCACGCCCAATTGCCCGGAAGCCGCCATCCCGGGTGGGGACGCG
CCGGGCCGGAGCGNNNNNNNNNNAAGAATGATACGTGGTAAAAAACCAAA
GGCGAGAAAAAAAGGGGTCCGTCCCCCCCCCCCAAGGACCGGGGAAAAAA
ATGATGGTGAGACCCCCCCCCCCCCCCACTCCGCGCGCTCATCGGTATCC
CCCCTCCCCCTTGCTGAATGCGCAGGAAGCCGCCATCCTGGAGTGGGAAC
TCAAGGGCCGAGATGACGCCGCCAGTGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8083:3738..5766-

>mRNA_E_fasciculatus_S2_contig8083.16240.1 ID=mRNA_E_fasciculatus_S2_contig8083.16240.1|Name=mRNA_E_fasciculatus_S2_contig8083.16240.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8083:3738..5766- (Ectocarpus fasciculatus EfasUO2)
GAGCTAGAGGAAGAGGAGGTAGCGCTGGCCGCCAAGATGCTCCCGCGCTG
GAAGCAGCGCCACGATGTAGACTGCCGAAGATGCGGGGAAGGGGGCATTG
TCTTATGCTGCGACTTCTGCCACCTGGTCTACCACCCGAGATGTCTGGAG
GTCACCCCGGGCCTGACCAGCCTCTTCGCGTGCTCCGACTGCAAGGAGGA
AGCCGCCATCCTGGAGTGGGAACTCAAGGGCCGAGATGACGCCGCCAGTG
GG
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