mRNA_E_fasciculatus_S2_contig8077.16232.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8077.16232.1
Unique NamemRNA_E_fasciculatus_S2_contig8077.16232.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8077.16232.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.620e-44
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 DQGQRRPDGCSWGAVTSWPFRDGPRAYPGADAPCAGGQRSKRGGGRKGRGG--SAERSAREWPVGGHGVYTVVACPGETAVAYVSAKCPGPGW 273
            DQGQ+RPDGCSWGAVTSWPFRD PRAYPGADAPCAGGQRSKRG  RKGRGG  S ER A+EWPVGGHGVYTVVACPGETAVA+VSAKCPGPGW
Sbjct:  542 DQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGA-RKGRGGGGSEERCAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 633
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8077.16232.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Cyclic1.620e-4489.25nucleotide-binding domain-containing protein n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8077contigE_fasciculatus_S2_contig8077:540..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1084
Hectar predicted targeting categoryother localisation
Exons1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.3660865-CDS-E_fasciculatus_S2_contig8077:539..8151696842468.3660865-CDS-E_fasciculatus_S2_contig8077:539..815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8077 540..815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.3870208-UTR-E_fasciculatus_S2_contig8077:815..16211696842468.3870208-UTR-E_fasciculatus_S2_contig8077:815..1621Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8077 816..1621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8077.16232.1prot_E_fasciculatus_S2_contig8077.16232.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8077 540..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8077.16232.1

>prot_E_fasciculatus_S2_contig8077.16232.1 ID=prot_E_fasciculatus_S2_contig8077.16232.1|Name=mRNA_E_fasciculatus_S2_contig8077.16232.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
DQGQRRPDGCSWGAVTSWPFRDGPRAYPGADAPCAGGQRSKRGGGRKGRG
GSAERSAREWPVGGHGVYTVVACPGETAVAYVSAKCPGPGW*
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mRNA from alignment at E_fasciculatus_S2_contig8077:540..1621+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8077.16232.1 ID=mRNA_E_fasciculatus_S2_contig8077.16232.1|Name=mRNA_E_fasciculatus_S2_contig8077.16232.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1082bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8077:540..1621+ (Ectocarpus fasciculatus EfasUO2)
GATCAAGGCCAGCGGCGGCCCGACGGCTGCTCGTGGGGCGCCGTGACGTC
CTGGCCGTTCCGAGACGGTCCTCGCGCGTACCCCGGTGCCGACGCCCCAT
GCGCCGGCGGGCAGAGGAGCAAGCGGGGCGGCGGCCGGAAGGGGCGCGGC
GGGAGCGCGGAGCGATCTGCGAGAGAGTGGCCCGTCGGGGGTCACGGGGT
GTACACGGTTGTCGCTTGCCCCGGGGAAACCGCCGTGGCGTACGTTTCGG
CCAAGTGTCCCGGGCCGGGGTGGTGACGGAAGTGCCCATATAAAAATCTA
ATCCATTCCTGGTTGACGTGTAGTGGCCACCGACAGATCGATGCAAGCGC
CGAAGGACAAAGGGGGAGGAGTCTTCGTTCTCCTCTCAACTGCTGGGCCC
TGACGAGCCTGAGGGAGTCAAGAAAAAGAGAGCAATTTTGCCATGCATGT
CACAAGGGCGGCCGGGTATTCGGCCGTGTTGCTCGTGTTGTTGTGTGGAT
CCTCCCCCGGTTGTATGTGTTGAGGGGTAATGCAGGTCTGTCTGTCCGTG
GCCACCTATCGCCAACGATGTTAGACGAGGCAACAGGAACGGAAATGAGC
CGAAGGTGATCATAGGCTGCATGTGTGTTGAAAGTCGTCGGTTGTGTTGG
TACTGATGGCCATGGCCAATGGAATGACGAAATACCGAGGTTCCGTTTCA
CGACGTGTTCCGTTTCACGGCGTGCACAGCCGAAACTGCTCAAGACGTCC
TTGTTCTTGGTTCAACCGCGATGTGCTTGTAGTAATGCGCATTCGCGTCG
AATGAGGAGAGGAAGGCCGCCTGATGTTGTGCATGAGATGTCGCATTTAG
ACTGGCAGGTATACCTGCTTGTCTCGTGTGTGTTAAGGGGAAAGGGGGCT
GTCCCCAAATGTCTTGGGACATTGTGCACCTCCAGAGAAAGAGGTTGCGG
GATTTAGCGGAAACAAACTGCGACTCAAAAGCGAAACCGAGGACAGCAGT
GACTCCCATGATACTCCTTGGGGTGTGTGGTTTGGAGTAACAGGCGGCTT
TGCTCAACAAGAGTGAGGGTGACGTGCTCATC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8077:540..1621+

>mRNA_E_fasciculatus_S2_contig8077.16232.1 ID=mRNA_E_fasciculatus_S2_contig8077.16232.1|Name=mRNA_E_fasciculatus_S2_contig8077.16232.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8077:540..1621+ (Ectocarpus fasciculatus EfasUO2)
GATCAAGGCCAGCGGCGGCCCGACGGCTGCTCGTGGGGCGCCGTGACGTC
CTGGCCGTTCCGAGACGGTCCTCGCGCGTACCCCGGTGCCGACGCCCCAT
GCGCCGGCGGGCAGAGGAGCAAGCGGGGCGGCGGCCGGAAGGGGCGCGGC
GGGAGCGCGGAGCGATCTGCGAGAGAGTGGCCCGTCGGGGGTCACGGGGT
GTACACGGTTGTCGCTTGCCCCGGGGAAACCGCCGTGGCGTACGTTTCGG
CCAAGTGTCCCGGGCCGGGGTGGTGA
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