mRNA_E_fasciculatus_S2_contig8076.16231.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8076.16231.1
Unique NamemRNA_E_fasciculatus_S2_contig8076.16231.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: Similar (to SET domain, bifurcated 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM06_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.360e-26
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEH 141
            DGREMYCRMCGDGGELTSCDERQA TRRPCPFSFCLACIERNFGYEH
Sbjct:   81 DGREMYCRMCGDGGELTSCDERQAGTRRPCPFSFCLACIERNFGYEH 127
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: DNA (helicase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8F3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-10
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CGDGG+L  CD         C FSFC  CI RNFG E V
Sbjct:   84 DGHEIYCRWCGDGGDLNLCDT--------CKFSFCSGCITRNFGVEGV 123
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BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: DNA (helicase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Y2_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 7.320e-10
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG+EMYCR CGDGG++  CD         CP  FC AC+ERNFG   V
Sbjct:  245 DGKEMYCRWCGDGGDIFPCDR--------CPKGFCRACVERNFGPREV 284
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BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: uncharacterized (protein LOC114245299 n=3 Tax=Bombyx TaxID=7090 RepID=A0A6J2JV68_BOMMA)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CG GG++  C +        CP  FC  CI+RNFG   +
Sbjct:  121 DGSELYCRWCGQGGQVFCCSD--------CPHVFCAKCIKRNFGQSKI 160
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BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: DNA (helicase (Fragment) n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1WP56_PECGO)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CG GG++  C +        CP  FC  CI+RNFG   +
Sbjct:  112 DGSELYCRWCGQGGQVYCCSD--------CPHVFCAKCIKRNFGMPKI 151
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: uncharacterized (protein LOC105385227 isoform X1 n=2 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018CFF567)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6
Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CG GG++  C +        CP  FC  CI+RN G E +
Sbjct:  107 DGSELYCRWCGQGGQVYCCSD--------CPHVFCAKCIKRNLGMEKI 146
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BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: DNA (helicase n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2LG39_CHISP)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-6
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CG GG++  C +        CP  FC  C++RNFG   +
Sbjct:  110 DGSELYCRWCGQGGQVYCCSD--------CPHVFCAKCVKRNFGQPKI 149
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: uncharacterized (protein LOC113235122 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6EBA)

HSP 1 Score: 51.2 bits (121), Expect = 3.660e-6
Identity = 21/48 (43.75%), Postives = 26/48 (54.17%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV 144
            DG E+YCR CG GG++  C          CP  FC  CI+RNFG   +
Sbjct:  113 DGSELYCRWCGQGGQVYCCSN--------CPHVFCAKCIKRNFGMPKI 152
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: DNA (helicase n=2 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1V631_SPOFR)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFG 132
            DG E+YCR CG GG++  C +        CP  FC  C++RNFG
Sbjct:  109 DGSELYCRWCGQGGQVFCCSD--------CPHVFCAKCVKRNFG 144
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Match: transcriptional (regulator ATRX n=1 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C13F53B)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:    1 DGREMYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFG 132
            DG E+YCR CG GG++  C +        CP  FC  C++RNFG
Sbjct:  109 DGSELYCRWCGQGGQVYCCSD--------CPHVFCAKCVKRNFG 144
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8076.16231.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar2.360e-2697.87to SET domain, bifurcated 1 n=1 Tax=Ectocarpus sil... [more]
DNA2.080e-1056.25helicase (Fragment) n=1 Tax=Rhizochromulina marina... [more]
DNA7.320e-1054.17helicase (Fragment) n=1 Tax=Heterosigma akashiwo T... [more]
uncharacterized1.430e-643.75protein LOC114245299 n=3 Tax=Bombyx TaxID=7090 Rep... [more]
DNA1.950e-643.75helicase (Fragment) n=1 Tax=Pectinophora gossypiel... [more]
uncharacterized1.960e-643.75protein LOC105385227 isoform X1 n=2 Tax=Plutella x... [more]
DNA2.680e-641.67helicase n=1 Tax=Chilo suppressalis TaxID=168631 R... [more]
uncharacterized3.660e-643.75protein LOC113235122 n=1 Tax=Hyposmocoma kahamanoa... [more]
DNA5.010e-645.45helicase n=2 Tax=Spodoptera frugiperda TaxID=7108 ... [more]
transcriptional5.010e-645.45regulator ATRX n=1 Tax=Spodoptera litura TaxID=698... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8076contigE_fasciculatus_S2_contig8076:155..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score99.0
Seed ortholog evalue5.9e-19
Seed eggNOG ortholog2880.D7FM06
Preferred nameSETDB2
Model size144
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09097,ko:K10779,ko:K11421,ko:K18494,ko:K18626,ko:K18655
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04066,ko04550,ko04934,ko05200,ko05204,ko05211,map00310,map04066,map04550,map04934,map05200,map05204,map05211
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000278,GO:0001501,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008356,GO:0008757,GO:0009292,GO:0009294,GO:0009506,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0017145,GO:0018022,GO:0018023,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0033043,GO:0033044,GO:0034968,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0036124,GO:0036211,GO:0040007,GO:0040029,GO:0042054,GO:0042078,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0045892,GO:0045934,GO:0045935,GO:0046974,GO:0048132,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048589,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051037,GO:0051038,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051321,GO:0051567,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060348,GO:0060429,GO:0060562,GO:0060968,GO:0060972,GO:0061371,GO:0061647,GO:0065007,GO:0070013,GO:0070986,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0090308,GO:0090309,GO:0097159,GO:0098722,GO:0098728,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905269,GO:1990841,GO:2000112,GO:2000113,GO:2001141,GO:2001252
Exons1
EggNOG free text desc.histone-lysine N-methyltransferase activity
EggNOG OGsCOG0553@1,COG2940@1,KOG1015@2759,KOG1141@2759
EC2.1.1.43,3.6.4.12,3.6.4.13
Cds size132
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.2515168-CDS-E_fasciculatus_S2_contig8076:154..2861696842468.2515168-CDS-E_fasciculatus_S2_contig8076:154..286Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8076 155..286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.2662077-UTR-E_fasciculatus_S2_contig8076:286..2981696842468.2662077-UTR-E_fasciculatus_S2_contig8076:286..298Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8076 287..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8076.16231.1prot_E_fasciculatus_S2_contig8076.16231.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8076 155..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8076.16231.1

>prot_E_fasciculatus_S2_contig8076.16231.1 ID=prot_E_fasciculatus_S2_contig8076.16231.1|Name=mRNA_E_fasciculatus_S2_contig8076.16231.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=44bp
MYCRMCGDGGELTSCDERQAHTRRPCPFSFCLACIERNFGYEHV
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mRNA from alignment at E_fasciculatus_S2_contig8076:155..298-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8076.16231.1 ID=mRNA_E_fasciculatus_S2_contig8076.16231.1|Name=mRNA_E_fasciculatus_S2_contig8076.16231.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8076:155..298- (Ectocarpus fasciculatus EfasUO2)
GACGGGCGCGAGATGTACTGCCGGATGTGTGGAGATGGCGGAGAGCTTAC
GTCGTGCGACGAGCGCCAGGCGCACACCCGAAGGCCGTGTCCGTTCTCGT
TTTGCCTGGCGTGCATCGAGCGAAACTTCGGCTACGAACATGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8076:155..298-

>mRNA_E_fasciculatus_S2_contig8076.16231.1 ID=mRNA_E_fasciculatus_S2_contig8076.16231.1|Name=mRNA_E_fasciculatus_S2_contig8076.16231.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8076:155..298- (Ectocarpus fasciculatus EfasUO2)
ATGTACTGCCGGATGTGTGGAGATGGCGGAGAGCTTACGTCGTGCGACGA
GCGCCAGGCGCACACCCGAAGGCCGTGTCCGTTCTCGTTTTGCCTGGCGT
GCATCGAGCGAAACTTCGGCTACGAACATGTG
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