mRNA_E_fasciculatus_S2_contig8046.16208.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8046.16208.1
Unique Name	mRNA_E_fasciculatus_S2_contig8046.16208.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.900e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 SSHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SSHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA
Sbjct:  806 SSHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 880

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.100e-35
Identity = 73/105 (69.52%), Postives = 74/105 (70.48%), Query Frame = 1

Query:    1 SSHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAK------------------------------LTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SSHLATTGIATSCGEQP+KGLLDPAAMARLTVAESLTNIMWAK                              LTSL DIKASGNWMWAAKLPGECARMWKACVA
Sbjct:  286 SSHLATTGIATSCGEQPIKGLLDPAAMARLTVAESLTNIMWAKASFCFVMRFVLLVPGKFVAVANAMLAVLCSLTSLGDIKASGNWMWAAKLPGECARMWKACVA 390

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.380e-32
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1

Query:    7 HLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            H  TTGIAT+CGEQP+KGL+ PAAMAR+TVAE+LTNIMWAK+++L DIKASGNWMWA+KLPGECARM+ AC A
Sbjct:  727 HAGTTGIATACGEQPIKGLVSPAAMARMTVAEALTNIMWAKVSALGDIKASGNWMWASKLPGECARMYDACEA 799

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.260e-29
Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            +H   TG AT+CGEQP+KGL+D AAMAR+TVAE++TNI+WAK++ +EDIKASGNWM+AAKLPGE A+MW ACVA
Sbjct:  478 THFGITGTATACGEQPIKGLIDSAAMARMTVAEAMTNIVWAKMSKIEDIKASGNWMYAAKLPGEGAKMWDACVA 551

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEH8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.960e-29
Identity = 52/74 (70.27%), Postives = 65/74 (87.84%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            +H   TG A +CGEQP+KGL+D AAMAR+TVAE++TNI+WAK++ +EDIKASGNWM+AAKLPGE A+MW ACVA
Sbjct:  605 THFGITGTAAACGEQPIKGLIDSAAMARMTVAEAMTNIVWAKMSKIEDIKASGNWMYAAKLPGEGAKMWDACVA 678

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPP8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.520e-28
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SH    GI T+CGEQP+KGLL P AMARL V+E LTNI WA+L+S+ DIKASGNWMWAAKLPGE AR+W AC A
Sbjct:  731 SHFTNKGIVTACGEQPIKGLLSPGAMARLAVSELLTNITWAQLSSISDIKASGNWMWAAKLPGEAARVWDACSA 804

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZKL3_TRICV)

HSP 1 Score: 114 bits (286), Expect = 5.130e-28
Identity = 51/74 (68.92%), Postives = 65/74 (87.84%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            +H  TTG A +CGEQP+KGL+D AAMAR+TVAE++TN+MWAK++ LED+KASGNWM+AAKLPGE A+M+ AC A
Sbjct:  304 THFGTTGTAVACGEQPIKGLVDSAAMARMTVAEAMTNLMWAKISKLEDVKASGNWMYAAKLPGEGAKMYDACEA 377

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UC18_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.260e-28
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SHL+TTG A +CGEQP+KGL+DPAAMAR+TVAE++TNIMWAKL+SL DIK +GNWMWAAK  GE  +M+  C A
Sbjct:  718 SHLSTTGAAITCGEQPIKGLIDPAAMARMTVAETITNIMWAKLSSLTDIKVAGNWMWAAKFEGEGPKMYDCCKA 791

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BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHW3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.330e-28
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SH +TTG A SCGEQP+KGL+D AAMAR+TVAESLTN++WA+++ L+D+KASGNWM+AAKLPGE ++M+ AC A
Sbjct:  300 SHFSTTGTAVSCGEQPIKGLVDAAAMARMTVAESLTNLVWARISGLQDVKASGNWMYAAKLPGEGSKMYAACEA 373

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE77_THAPS)

HSP 1 Score: 114 bits (285), Expect = 7.180e-28
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1

Query:    4 SHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDIKASGNWMWAAKLPGECARMWKACVA 225
            SH   TG A SCGEQP+KGL+D AAMAR+TVAE++TN+MWAK++ +EDIKASGNWM+AAKLPGE A+M+ AC A
Sbjct:  707 SHFGITGTAVSCGEQPIKGLVDSAAMARMTVAEAMTNLMWAKISKIEDIKASGNWMYAAKLPGEGAKMYDACEA 780

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8046.16208.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Phosphoribosylformylglycinamidine	1.900e-42	100.00	synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]
Uncharacterized	1.100e-35	69.52	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Phosphoribosylformylglycinamidine	6.380e-32	78.08	synthase n=1 Tax=Tribonema minus TaxID=303371 RepI...	[more]
Phosphoribosylformylglycinamidine	1.260e-29	71.62	synthase n=1 Tax=Pseudo-nitzschia multistriata Tax...	[more]
Phosphoribosylformylglycinamidine	5.960e-29	70.27	synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102...	[more]
Phosphoribosylformylglycinamidine	1.520e-28	71.62	synthase n=1 Tax=Rhizochromulina marina TaxID=1034...	[more]
Hypothetical	5.130e-28	68.92	protein (Fragment) n=1 Tax=Trieres chinensis TaxID...	[more]
Phosphoribosylformylglycinamidine	5.260e-28	70.27	synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepI...	[more]
Hypothetical	5.330e-28	68.92	protein (Fragment) n=1 Tax=Proboscia inermis TaxID...	[more]
Phosphoribosylformylglycinamidine	7.180e-28	70.27	synthase n=1 Tax=Thalassiosira pseudonana TaxID=35...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8046	contig	E_fasciculatus_S2_contig8046:1535..2352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	156.8
Seed ortholog evalue	4.1e-36
Seed eggNOG ortholog	2880.D8LIP1
Model size	227
KEGG rclass	RC00010,RC01160
KEGG ko	ko:K01952
KEGG Reaction	R04463
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG Module	M00048
Hectar predicted targeting category	other localisation
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009532,GO:0009536,GO:0009555,GO:0009570,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0055046,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons	2
EggNOG free text desc.	phosphoribosylformylglycinamidine synthase activity
EggNOG OGs	COG0046@1,KOG1907@2759
EC	6.3.5.3
Cds size	225
COG Functional cat.	F
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842466.182418-CDS-E_fasciculatus_S2_contig8046:1534..1663	1696842466.182418-CDS-E_fasciculatus_S2_contig8046:1534..1663	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8046 1535..1663 +
1696842466.1979966-CDS-E_fasciculatus_S2_contig8046:2255..2351	1696842466.1979966-CDS-E_fasciculatus_S2_contig8046:2255..2351	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8046 2256..2351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8046.16208.1	prot_E_fasciculatus_S2_contig8046.16208.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8046 1535..2351 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8046:1535..2352+
coding sequence from alignment at E_fasciculatus_S2_contig8046:1535..2352+

protein sequence of mRNA_E_fasciculatus_S2_contig8046.16208.1

>prot_E_fasciculatus_S2_contig8046.16208.1 ID=prot_E_fasciculatus_S2_contig8046.16208.1|Name=mRNA_E_fasciculatus_S2_contig8046.16208.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=75bp
SSHLATTGIATSCGEQPMKGLLDPAAMARLTVAESLTNIMWAKLTSLEDI
KASGNWMWAAKLPGECARMWKACVA

mRNA from alignment at E_fasciculatus_S2_contig8046:1535..2352+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8046.16208.1 ID=mRNA_E_fasciculatus_S2_contig8046.16208.1|Name=mRNA_E_fasciculatus_S2_contig8046.16208.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=818bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8046:1535..2352+ (Ectocarpus fasciculatus EfasUO2)
TCGAGCCACCTCGCGACCACCGGCATCGCCACGTCGTGCGGGGAGCAGCC
GATGAAGGGGCTGCTTGACCCCGCGGCCATGGCCAGGCTCACGGTGGCGG
AGTCCCTGACCAACATCATGTGGGCCAAGGCGAGTTTTTTTTTTTCTGTC
CCCTCCGTTTCTTTACTCTATTGGTTAAAGCATGGGAATCTCGCACAGTT
TTCATTCGTTTCCGGCTTATTTGCTGTGGGGGCCGACACTAAATTGGTCG
TTGCGCTCCGTACTTCATACAGACTGTGCTTGTCTGTTGTCTTCAGGGGT
GTAGTTTGTTGTTTGCCAATGCGAGGTTTTTTGCGCGCTTCGTATTGCTT
GCTTTTCGTTGTTGGCGGGCTGTTGATAAATGGGCGAGGCTTACCATCCT
CTTGTCGTTTTTTTTGTCTTGTTTTTGTTTGTTTTTCGCTGACGTACTGT
TCATAAGTGAGTGCTGGCTTTCGCAGGGTGTGCTCATTAGCGTGCAGAGA
TCGTCGTCCAGCTGCTGCTAGCAGCAGCAGCAGCAGTCGTGGTTCGTGGT
TTCTTTGCGCTGCATCCCGGTGGCAGGCAGCCGCGTCAAGTCATAGTTTA
CCGTAGTACCACCCGTATTATTTTCTAGGACGTCGGTTGCAAGGAGCGCG
AGCGTTCTTGTAACCTTGTCGTGCGTTGCGCTGCCATTTGTTTTCTTCTC
CTCCCGCGGCGCTGGCGATAGCTCACCTCCCTCGAAGACATCAAGGCCAG
CGGCAACTGGATGTGGGCCGCCAAGCTACCCGGAGAGTGTGCCAGGATGT
GGAAGGCGTGCGTGGCAC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8046:1535..2352+

>mRNA_E_fasciculatus_S2_contig8046.16208.1 ID=mRNA_E_fasciculatus_S2_contig8046.16208.1|Name=mRNA_E_fasciculatus_S2_contig8046.16208.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8046:1535..2352+ (Ectocarpus fasciculatus EfasUO2)
TCGAGCCACCTCGCGACCACCGGCATCGCCACGTCGTGCGGGGAGCAGCC
GATGAAGGGGCTGCTTGACCCCGCGGCCATGGCCAGGCTCACGGTGGCGG
AGTCCCTGACCAACATCATGTGGGCCAAGCTCACCTCCCTCGAAGACATC
AAGGCCAGCGGCAACTGGATGTGGGCCGCCAAGCTACCCGGAGAGTGTGC
CAGGATGTGGAAGGCGTGCGTGGCA