mRNA_E_fasciculatus_S2_contig804.16201.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Match: VPS37 (C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ10_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 1.950e-150 Identity = 240/302 (79.47%), Postives = 248/302 (82.12%), Query Frame = 1
Query: 1 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTPGRDQTSTSWAGPISQPRSG---------FSAPPVIHP----------------------RTTSEEQPKKTRP-VHHTPIPDIPDAFSELQGLSTEKLTRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLRKEGEKIKEELKALQASYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPAQEFLEEFLKERQRYHMLAAKIECMKRDIRF 810
PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTT GR Q ST W GPI+Q SG PPV +P RT E Q ++ RP VHHTPIPDIPD F ELQGLSTEKL RLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLR+EGEKIK ELKALQ SYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSE+VATDFLEKRVP Q+FL+EFLKERQRYHMLAAKIECMKRDIRF
Sbjct: 74 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTSGRVQASTVWGGPIAQEPSGTPPAVGAFGLGNPPVSYPAGRATGGAASAKGKAHMTSTDPRTGGEVQTRRMRPPVHHTPIPDIPDTFGELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 375
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Match: VPS37 (C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX2_9STRA) HSP 1 Score: 140 bits (352), Expect = 3.330e-33 Identity = 116/336 (34.52%), Postives = 148/336 (44.05%), Query Frame = 1
Query: 1 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTPGR------------------------------------DQTSTSWA---GPIS-------------QPRSG--------------FSAPPVIHPRTTSEEQPKKTRPVHHTPIPDIPDAFSELQGLSTEKLTRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLRKEGEKIKEELKALQASYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPAQEFLEEFLKERQRYHMLAAKIECMKRDIRF 810
PVLQLLS V HPWVN YMQVVGHPDL W G I IV ++ E S G +T G+ D+ +W GPI QP G +S V S K+ H TPIP IP F+EL GL+ +L RL GD A ++ GM + M++L D+ KGN E A+ + LR E +K EL A + G G +AD + LK VK A+K AD SS+ VA FL R EFLE F+ +RQRYH AA++EC+KR++ F
Sbjct: 87 PVLQLLSTVDHPWVNEYMQVVGHPDLALWRGNAGKPISVIVKEIMIEL--SGGTASTAGQALPQQPSQRMPTNAASFAHPSTGPQQWQQQQPSWRPDERKPNWTPPEGPIGAANGNSGGQFWRPQPSDGSQSGGGRVGGGAAQWSPSQVGAGGGGSSTDAKRVEEKHRTPIPAIPSRFAELDGLTEAQLRRLAGDGVALAQIVDGMASARGMRELLRDLAKGNAEVAKANMESSRKLDELRDEITALKMELHEAAA-----LNPVGVGAGASADHVTLKAVKEAAKDADQSSQAVADSFLAGRAGVGEFLEGFMAQRQRYHRCAARMECVKREMGF 415
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HP11_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.470e-16 Identity = 81/274 (29.56%), Postives = 129/274 (47.08%), Query Frame = 1
Query: 1 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTPGRDQTSTSWAGPISQ--PRSGFSAPPVIHPRTTSEE---QPKKTRPVH--HTPIPDIPDAFSELQGLSTEKLTRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLRKEGEKIKEELKALQASYEDKAHGG-GKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPAQEFLEEFLKERQRYHMLAAKIECMKR 798
PVLQLL+P+ H W+N Y Q+VGHP L WD + +I+E + + R Q S P S+ P S +A + P TT + PK+ TP+P IP F +L +S +L L D+ A QA L G +V M D+R V + N + A+ L ++D +LR E ++ L+ ++ ++ K + ++ +L+ ++ A AD SE VA+ + A EF++ +L R+ +H A E R
Sbjct: 63 PVLQLLTPLKHHWINQYNQIVGHPYLSNWDSKFE------LTTLIKEVSEE---LKSLSRQQPDVSSTNPASRHAPPSYRAAAMLDEPSTTMRQPSPSPKRNDEPEPFKTPLPPIPAHFEDLDLMSVRELETLDRDDVAFQAHLFGFESVRTMCDMREQVIEENAKIAQSNLQRKDELELLRTEALTLQTTLQEIKERFDAKTRARVDADARKCSEGAVLETIRQAVDKADEESEDVASGLRSGDMSAGEFVKAYLPIRKSFHRRNAAQEYSHR 327
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS55_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.470e-13 Identity = 79/297 (26.60%), Postives = 126/297 (42.42%), Query Frame = 1
Query: 1 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTP-----------GRDQTSTSWAGPISQPRSGFSAPPVIHP---------------------RTTSEEQPKKTRPVHHT--PIPDIPDAFSELQGLSTEKLTRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLRKEGEKIKEELKALQASYEDKAHGG-GKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPAQEFLEEFLKERQRYHMLAAKIE 786
P+LQLLSP HPWVN Y QV GH L W+ D+ V + + G P A QP PP H T + +P + P P+P++P +F++LQGL E+L +L D A ALL + +V ++ +R + + N AR TL K++ L+ E + EL+ L+ ++ K ++ + I + ++ ++ AD SE + T F ++ + EFL+ +L+ R+ YH A IE
Sbjct: 74 PILQLLSPFRHPWVNAYHQVTGHAYLSRWNEQY-----DLTTLVKETLAELSRGTPAPQPAIXXXXXXXXXXXXXXXXAVRAPQP------PPYEHQVXXXXXXXXXXXXXXAAERRLSTPEQRRPSASPPRQEVSFPLPEVPSSFAQLQGLDRERLQKLDQDVVAFSALLHDLDSVKTLRSMREETIQENARIARETLDKREELEALQSEVLVSRLELQELETEFQTKLQSQLAQDSEKLSQAGIYEALRTSAAEADEKSEDLLTQFQDEDLGMAEFLKSYLELRKLYHRRTAAIE 359
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Match: vacuolar (protein sorting-associated protein 37A-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EB06E8A) HSP 1 Score: 81.3 bits (199), Expect = 4.830e-13 Identity = 79/300 (26.33%), Postives = 131/300 (43.67%), Query Frame = 1
Query: 1 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEF------------GRSNGGVTTP------------GRDQTSTSWAGPISQP----RSGFSAPPVIHPRTTSEEQPKKTRPVHHTPIPDIPDAFSELQGLSTEKLTRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLRKEGEKIKEELKALQASYEDKAHGGGKNMGGTADQM----ILKRVKHASKMADTSSERVATDFLEKRVPAQEFLEEFLKERQRYHMLAAKIECMKRDI 804
P + + P+THPWV+ M+VVG P+++ + + +G + +++EF G+ G P G Q GP P +G PP++ + T+ P P+PDI A+ EL+ +L L+ +E LL G+ + R R D+ V+ AR L KQ L+ K EL A++ +E + +DQ I +K A A+ SE++A DFL+K++ +EFL+ ++++R HM AK E + + I
Sbjct: 72 PSVTVQPPLTHPWVDIQMKVVGCPNINNFSMHSD--LGVAIQTIVEEFKKTPPRILPHLVGQQFGAPQPPVAPVSGPGYPLYGNPQALYPLVGPPPLPPRAVENGREGPPILSDQDTNASSPAY-------PVPDIMKAYPELKDKGLFELQELVDNEEKVLDLLQGLPELARFTQDREDISAQCVQLARENLTKQPVVEELKDSVLKKMSELDAIKGEFETHCE----HHLTLSDQFHPANIQTNLKVAVMEAEEESEKIADDFLDKKIDIEEFLQTYMQKRTLCHMRKAKEEKLNQII 358 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig804.16201.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig804.16201.1 >prot_E_fasciculatus_S2_contig804.16201.1 ID=prot_E_fasciculatus_S2_contig804.16201.1|Name=mRNA_E_fasciculatus_S2_contig804.16201.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=254bp MQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTPGRDQTSTSWback to top mRNA from alignment at E_fasciculatus_S2_contig804:3337..5298+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig804.16201.1 ID=mRNA_E_fasciculatus_S2_contig804.16201.1|Name=mRNA_E_fasciculatus_S2_contig804.16201.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1962bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig804:3337..5298+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig804:3337..5298+ >mRNA_E_fasciculatus_S2_contig804.16201.1 ID=mRNA_E_fasciculatus_S2_contig804.16201.1|Name=mRNA_E_fasciculatus_S2_contig804.16201.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=762bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig804:3337..5298+ (Ectocarpus fasciculatus EfasUO2)back to top |