mRNA_E_fasciculatus_S2_contig8028.16193.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8028.16193.1
Unique NamemRNA_E_fasciculatus_S2_contig8028.16193.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.010e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 188
            LE+MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA
Sbjct:  450 LEKMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 511
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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR4_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.100e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 188
            LE+MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA
Sbjct:  464 LEKMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 525
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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0L7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.970e-23
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE +AV+ G+ SGDLVHPVVY PEF   EF+STVADMKNSV +R+NAQVSCAGQFIANH+
Sbjct:   83 LEGLAVKAGKISGDLVHPVVYAPEFHRAEFKSTVADMKNSVKNRANAQVSCAGQFIANHL 142
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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6D4_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 5.050e-22
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+  E GRSSGDL HP+ +CPEF+ +EF+S VADMKNSV DR+NAQVSCA QFI NH+
Sbjct:  171 LERLVTEVGRSSGDLCHPMPFCPEFYRDEFKSAVADMKNSVKDRANAQVSCAAQFIGNHL 230
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWD2_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 8.440e-22
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G++SGDLVHPV Y PEF+  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  436 LERLAVKAGKASGDLVHPVPYAPEFYRAEFKSTVADMKNSVKNRTNAQVSCAGQFIGNHL 495
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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Metalloprotease (family M17, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3Z8_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 8.510e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G+ SGDLVHPV Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  441 LERLAVKAGKRSGDLVHPVPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 500
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Metalloprotease (family M17, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVM1_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 9.240e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G+ SGDLVHPV Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  835 LERLAVKAGKRSGDLVHPVPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 894
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFJ4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.570e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV  G++SGDLVHP+ Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  432 LERLAVRAGKASGDLVHPMPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 491
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZET8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.110e-21
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE   V  G++SGD VHP+ Y PEFF +EF+S VADMKNSV  R+NAQVSCAGQFIANH+
Sbjct:    5 LEAWTVAAGKASGDFVHPLPYAPEFFRDEFKSKVADMKNSVKTRTNAQVSCAGQFIANHL 64
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Aminopeptidase (n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U729_SALR5)

HSP 1 Score: 94.7 bits (234), Expect = 2.920e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE  AV  GR+SGDLVHP+++CPE FS+EF+S VADMKNSVA+RSNAQVSCA QFI NH+
Sbjct:  430 LEGEAVAAGRASGDLVHPLMWCPELFSDEFKSAVADMKNSVANRSNAQVSCAAQFIGNHL 489
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CYTOSOL_AP1.010e-3298.39domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
CYTOSOL_AP1.100e-3298.39domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CYTOSOL_AP5.970e-2375.00domain-containing protein (Fragment) n=1 Tax=Notho... [more]
Hypothetical5.050e-2270.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
CYTOSOL_AP8.440e-2273.33domain-containing protein n=1 Tax=Globisporangium ... [more]
Metalloprotease8.510e-2275.00family M17, putative n=1 Tax=Pythium insidiosum Ta... [more]
Metalloprotease9.240e-2275.00family M17, putative n=1 Tax=Pythium insidiosum Ta... [more]
CYTOSOL_AP1.570e-2173.33domain-containing protein n=1 Tax=Pythium brassicu... [more]
CYTOSOL_AP2.110e-2168.33domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
Aminopeptidase2.920e-2173.33n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8028contigE_fasciculatus_S2_contig8028:5573..6425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score124.0
Seed ortholog evalue2.3e-26
Seed eggNOG ortholog2880.D8LBR4
Preferred nameNPEPL1
Model size188
KEGG koko:K09611
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0040008,GO:0040009,GO:0042802,GO:0046662,GO:0050789,GO:0050795,GO:0051239,GO:0065007,GO:2000241
Exons2
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0260@1,KOG2597@2759
Cds size177
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.6617098-CDS-E_fasciculatus_S2_contig8028:5572..56661696842464.6617098-CDS-E_fasciculatus_S2_contig8028:5572..5666Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8028 5573..5666 -
1696842464.673619-CDS-E_fasciculatus_S2_contig8028:6331..64141696842464.673619-CDS-E_fasciculatus_S2_contig8028:6331..6414Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8028 6332..6414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.6904628-UTR-E_fasciculatus_S2_contig8028:6414..64251696842464.6904628-UTR-E_fasciculatus_S2_contig8028:6414..6425Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8028 6415..6425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8028.16193.1prot_E_fasciculatus_S2_contig8028.16193.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8028 5573..6414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8028.16193.1

>prot_E_fasciculatus_S2_contig8028.16193.1 ID=prot_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=59bp
MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAG
QFIANHMEA
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mRNA from alignment at E_fasciculatus_S2_contig8028:5573..6425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8028.16193.1 ID=mRNA_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=853bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8028:5573..6425- (Ectocarpus fasciculatus EfasUO2)
CGCTCGAGAGGATGGCGGTCGAGTGCGGGCGATCGTCGGGCGACCTCGTG
CACCCCGTGGTCTACTGCCCCGAGTTCTTCAGCGAAGAGTTTAGGTTCGT
CAGCGGAGGGCGTTGAGAGCCCGGGGGGGGGGGGGGGGGTGGGCGCGGGG
GTTGGGGTTTTCTTCGGGGGGGGGAAGGGGGGGGGGGGCGGCGCGGCCGG
TCGGNNNNNNNNNNGGTTGGCGGGGGGGGGGGGTGGGGGGCGGGGGGGGG
GGGGGGGGGGATTGGGGTGCGTGTTGCGGTATTTATGCGGGGGGGGAGGG
GGGGGGGGGGGCTGAGAGCCCGGCTGGTCGGCGTGCGTGTTCCTGTATGT
ATGCGTCTTGTGGTTGCCATGCGATCAAGTTGGACGCTGAAGCACAACGC
TGCTTTGCGAGAGGCAAACAGCACAATCACAATCTCTCCAGGCTGCTTGC
TGCATCGCACTGCTCCTATCAGCGGGTTTTTACCGGAAAGGGTGGAGGAC
AGCCCGCAACGGGTACCCGCTTGACGTACGACTGCGAACTTTCTTCCGTA
TGGCGATGACCGGATCTTGTTGGCGTGTACGATACCAGATGGACCCGTGT
TTCCCGGATATGCCCACCGCAACTACCCAAGCTTGTCCGAGATTCCTTGA
AAGCTGACGATCGACATTGTTTGCTACTTCCTCCTCGCCGTCGGGGCGTG
GGCATCGCTAATCCACCCACGCTCGCCGCTGCCGCGTTGTGTGCCATGGC
AATATGCAGGTCCACCGTTGCTGACATGAAAAACTCGGTGGCAGACCGCT
CGAACGCTCAGGTGTCGTGCGCCGGGCAGTTCATCGCGAACCACATGGAG
GCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8028:5573..6425-

>mRNA_E_fasciculatus_S2_contig8028.16193.1 ID=mRNA_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8028:5573..6425- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGTCGAGTGCGGGCGATCGTCGGGCGACCTCGTGCACCCCGTGGT
CTACTGCCCCGAGTTCTTCAGCGAAGAGTTTAGGTCCACCGTTGCTGACA
TGAAAAACTCGGTGGCAGACCGCTCGAACGCTCAGGTGTCGTGCGCCGGG
CAGTTCATCGCGAACCACATGGAGGCG
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