mRNA_E_fasciculatus_S2_contig800.16166.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig800.16166.1
Unique NamemRNA_E_fasciculatus_S2_contig800.16166.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig800.16166.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 9.620e-93
Identity = 133/144 (92.36%), Postives = 135/144 (93.75%), Query Frame = 2 
Query:   35 MTDTDGTENPPSPAGDGSDQQKRLPKVTLTTPPTQEDIPQLLSALKLFRHQFSPRERHCLSKHPELGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMTQRLLRAALSDDWF 466
            MTD DGTE PP PAGD +DQ KRLPKVTL TPPTQEDIPQLLS LKLFRHQFSPRERHCL KHP LGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKM+QRLLRAALSDDWF
Sbjct:    1 MTDADGTEKPPPPAGDENDQPKRLPKVTLNTPPTQEDIPQLLSTLKLFRHQFSPRERHCLGKHPVLGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig800.16166.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.620e-9392.36protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig800contigE_fasciculatus_S2_contig800:4546..6889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size817
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.1590607-UTR-E_fasciculatus_S2_contig800:4545..48931696842462.1590607-UTR-E_fasciculatus_S2_contig800:4545..4893Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig800 4546..4893 -
1696842462.2421138-UTR-E_fasciculatus_S2_contig800:6855..68891696842462.2421138-UTR-E_fasciculatus_S2_contig800:6855..6889Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig800 6856..6889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.1713367-CDS-E_fasciculatus_S2_contig800:4893..50221696842462.1713367-CDS-E_fasciculatus_S2_contig800:4893..5022Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 4894..5022 -
1696842462.1822155-CDS-E_fasciculatus_S2_contig800:5807..58911696842462.1822155-CDS-E_fasciculatus_S2_contig800:5807..5891Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 5808..5891 -
1696842462.2235923-CDS-E_fasciculatus_S2_contig800:6633..68551696842462.2235923-CDS-E_fasciculatus_S2_contig800:6633..6855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 6634..6855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig800.16166.1prot_E_fasciculatus_S2_contig800.16166.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig800 4894..6855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig800.16166.1

>prot_E_fasciculatus_S2_contig800.16166.1 ID=prot_E_fasciculatus_S2_contig800.16166.1|Name=mRNA_E_fasciculatus_S2_contig800.16166.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=145bp
MTDTDGTENPPSPAGDGSDQQKRLPKVTLTTPPTQEDIPQLLSALKLFRH
QFSPRERHCLSKHPELGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQ
SQLLACIRTTRDASMCHEFRDEVERCGVKMTQRLLRAALSDDWF*
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mRNA from alignment at E_fasciculatus_S2_contig800:4546..6889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig800.16166.1 ID=mRNA_E_fasciculatus_S2_contig800.16166.1|Name=mRNA_E_fasciculatus_S2_contig800.16166.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:4546..6889- (Ectocarpus fasciculatus EfasUO2)
CAAAAGCGCTCAAGTTTCCTTGTCCAGCACTGCCATGACTGACACCGACG
GTACAGAGAACCCACCATCACCAGCCGGAGACGGGAGCGACCAGCAGAAG
AGACTGCCAAAGGTTACTTTGACTACGCCTCCGACTCAGGAGGACATACC
CCAGTTGCTGTCAGCTCTCAAGTTGTTTCGGCACCAGTTCTCGCCTCGGG
AGCGACATTGCCTCAGCAAGCACCCTGAGCTAGGGCCTTTGTACGAGGGG
GTTCAGGTAAGGGCCGGGAAACAGGACGAATCCGGAAAGTTCCTGCTGTG
CTATCTACGAAAGTATGTACATACAAACACGTACCAGCAGTTGTTCCGCT
ATCTTTCATGTTTCGTCGGCATGTCTTGTATGTACTCGCGCTGACTCTAA
TTTTGAGCGGTAGCGCGGTGGTGCTGTATTAGTGAAACGCAGTGTCTTGG
CCCAGTGTCTTGGCCCGGCATTTGTCTCGATGTGCGTGCTTTCTACCTGA
GTGCGCATACTGCTGTATCACTGGGAAGCAACTTGTTGTATGCATAGATA
TCGAATTGTAGACGAAAAATCTGGAGCGACGACGACCAGGTGCAGACTAC
AGCTACATTCACATCATTTCCCGGGATACATACCGCCGTAGCCACTAGCA
GGAAGGGGATAGATGGAGACGAAGAGGGAGGGAGGGAGAGAGGGGAGAAG
ATGAAGAGAGGGAGAGAAAGACACAAGACAAACAGAGAGAAGGGGGCAGG
GATCTAACAACAGAAGAATGTGGCAAGCATGGCTTTGGTTCACACGGCAC
AGCAAAGTAGCAGAGAACAATCTCAAGTTTGATCTCACAGGAGGCGAAGT
CAAATACATCGCACTCTGTGTACTACCAAGCATCTGGCAAGAGTAACCTG
CTCAGGCACCCATCAATTGAGTTCCAACCTCTGCCTTCTCGCATGCCCTT
CCCTCTGTGGTACCCGTTGCTCTCTGTATCTGCACCAACGTGGAACAGGG
GAAATGCGGCCAGTTCATTGACAAACCAAGAAGGTTCGCTGTTTGCAGCT
CGCGGCAGTTGTGCCCGAAGGAACAATCACAGGTAAGCACGATGGGGAGA
AAATGAGACACCCAGCCGACGACTTGGTGTGACTTGCGTTGGTGGGAGTC
CTCCTGTGTACCGATAGCAAAAGTTGTGCAGGCAGCAGCCGTTGGATCAG
GGTAAACGCAACCAAACACACAAAAGAGTGCGGTGCGGCCCCAGACCTTG
GGATATCTTCGTAGGTTACGCCCATGATTTGGGCGGGGGGGGGATCGACG
GGTGATACAGCCCTGGATGTTGTTGAAGAGGTGTGCTGAGATCACAGTAG
AAATATGTGGTAGCCTACATGTCCACCTCGCCTTCGCCAAGGCACAGGAA
ATGTGACTTATTCCTCTTTCACACCACCCAGCGACAATCCAATACCTTGT
GACATGCGTCCACGAGAGCTGCCAGTGCCTTCAATCACTCGGCGTTCCAC
GCGGGCTGCTCAAAGGCCAGTATTCTGTTTTTTTGTTTTTTTGGAGCCCT
GGCAGGCCACCATTTGATTCCACTTGGGTGTAGACTACATTCTCCGCGCA
CTCCGATTCCCCCCCCGTTGAAGCTTGGCGAGTTCCGACCCTCTCTCTGC
CGCAGCTTTCTCTCTCCCTCTCTGGGTACTGTAGATCATCTTGTAGCACT
TCGACTATCGCAACGCAATGCTCCTCCCCCCCCTCCCCCCCCTCTCTTCC
GATGGGTCCAGCCTCACTCCGCCCCTTCCACCCCCTTGCTCTTCTCCCCC
GCACGTTCTTCGTCCGACGTACCATTCCATATCCACGTATCCCCGGCTTG
ACTCCAAACAATGGCAGTTGCTCGCTTGCATCCGCACCACCCGGGACGCT
AGCATGTGCCACGAGTTCCGAGACGAGGTGGAACGGTGCGGGGTAAAGAT
GACCCAGCGCCTGCTCCGAGCAGCGCTATCGGACGACTGGTTCTAGCCTG
CGAGGGAAAGGGGACAATCGGAGCGAAAATCGCACCAACTCCTTGTTTTC
GCCATTTGCCGCGGCGGTTGCATATAGTCTAGAAGGACACCATACCGACC
GTCGGAGGGGACAAGGACCTTGTTTACGTTGTTTTGGAAACATTTGGTAC
GCACGTAGTAGGGCGGAGGGGGCGTTGTTTATGGTGTTTTTGGGACCATT
TGGGACGCGTACGTAGTTAGGATATACATGGTGGATCAAGTCTTGTTACA
GCCGCTGATGGTGAGGTGATGTATGTATGTATGTATTGAATGTTAATGTT
GTTTTCGTCTGTTTTTTCCCACCCACTTATTTTTGGACGTATTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig800:4546..6889-

>mRNA_E_fasciculatus_S2_contig800.16166.1 ID=mRNA_E_fasciculatus_S2_contig800.16166.1|Name=mRNA_E_fasciculatus_S2_contig800.16166.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:4546..6889- (Ectocarpus fasciculatus EfasUO2)
ATGACTGACACCGACGGTACAGAGAACCCACCATCACCAGCCGGAGACGG
GAGCGACCAGCAGAAGAGACTGCCAAAGGTTACTTTGACTACGCCTCCGA
CTCAGGAGGACATACCCCAGTTGCTGTCAGCTCTCAAGTTGTTTCGGCAC
CAGTTCTCGCCTCGGGAGCGACATTGCCTCAGCAAGCACCCTGAGCTAGG
GCCTTTGTACGAGGGGGTTCAGGGGAAATGCGGCCAGTTCATTGACAAAC
CAAGAAGGTTCGCTGTTTGCAGCTCGCGGCAGTTGTGCCCGAAGGAACAA
TCACAGTTGCTCGCTTGCATCCGCACCACCCGGGACGCTAGCATGTGCCA
CGAGTTCCGAGACGAGGTGGAACGGTGCGGGGTAAAGATGACCCAGCGCC
TGCTCCGAGCAGCGCTATCGGACGACTGGTTCTAG
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