mRNA_E_fasciculatus_S2_contig80.16159.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE) HSP 1 Score: 189 bits (479), Expect = 5.850e-57 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 282
MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA
Sbjct: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.050e-55 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 282
MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA
Sbjct: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.810e-48 Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 282
MSA+IEQRNQDATCY GNLD + TE LLWELMIQAGPV NVHMPKDK+T HQG+GFVEFRSE+DAEYAIKI+NMVKLFGKPLRVNKAS DRKA
Sbjct: 1 MSAAIEQRNQDATCYCGNLDEAATEELLWELMIQAGPVVNVHMPKDKVTNTHQGYGFVEFRSEEDAEYAIKILNMVKLFGKPLRVNKASSDRKA 94
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVH1_9STRA) HSP 1 Score: 160 bits (406), Expect = 4.080e-47 Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = 1
Query: 13 IEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 282
+EQRNQDATCY GNLD +TE LLWE+M+QAGPV+NVH+P+DK+TG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQDR+A
Sbjct: 6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPVSNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDRRA 95
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH37_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.800e-47 Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 279
MSA+IEQRNQDATCY GNLD V E LLWELM+QAGPV ++HMPKDK+T HQGFGFVEFRSE+DA+YAIKIMNMVKLF KP+RVNKASQDRK
Sbjct: 1 MSAAIEQRNQDATCYCGNLDDQVEEELLWELMLQAGPVVSLHMPKDKVTNSHQGFGFVEFRSEEDADYAIKIMNMVKLFDKPIRVNKASQDRK 93
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN) HSP 1 Score: 158 bits (400), Expect = 1.330e-45 Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 1
Query: 13 IEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 279
+EQRNQDATCY GNLD +TE LLWE+M+QAGP+ NVH+P+DK+TG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQD+K
Sbjct: 6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKK 94
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APL4_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.410e-43 Identity = 74/93 (79.57%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 279
MSA+IEQRNQDATCY GNLD V E LLWELM+QAGPV ++HMPKDK+T HQG+GFVEFRSE+DA+YAIK+MNMVKLFGKP+RVNKASQD+K
Sbjct: 1 MSAAIEQRNQDATCYCGNLDEQVDEELLWELMLQAGPVVSLHMPKDKVTASHQGYGFVEFRSEEDADYAIKVMNMVKLFGKPIRVNKASQDKK 93
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM10_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.170e-43 Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 4 SASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 282
SA++E RNQDATCY GNLD VTE +LWELM+QAGP+ +++MPKDK++G HQG+GFVEFR DDA+YA K+MNMVK++GKP+RVNKASQDRK+
Sbjct: 3 SANLEHRNQDATCYCGNLDEKVTEEILWELMLQAGPIQSIYMPKDKVSGNHQGYGFVEFRGTDDADYAHKVMNMVKVYGKPIRVNKASQDRKS 95
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGC9_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.950e-42 Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 1
Query: 1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 279
MSA+IEQRNQ+ATCY GNLD V E LLWE M+Q GPV NV MPKDK++G + G+GFVE+RSEDDA+YAIK++NMVKL+ KP++VNKASQD+K
Sbjct: 1 MSAAIEQRNQEATCYVGNLDEKVNEELLWEFMLQVGPVVNVFMPKDKVSGKYLGYGFVEYRSEDDADYAIKVLNMVKLYFKPVKVNKASQDKK 93
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Match: Splicing (factor 3B subunit 4 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVH7_NANGC) HSP 1 Score: 147 bits (370), Expect = 6.540e-42 Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 1
Query: 4 SASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 279
S +IEQRNQDAT Y G LD VTE LLWELM GPV +VHMP+DK+TG+HQ FGFVEFRSE+DA+YA+KIMNMV+++GKPLRVNKASQDRK
Sbjct: 3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRK 94 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig80.16159.1 >prot_E_fasciculatus_S2_contig80.16159.1 ID=prot_E_fasciculatus_S2_contig80.16159.1|Name=mRNA_E_fasciculatus_S2_contig80.16159.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGback to top mRNA from alignment at E_fasciculatus_S2_contig80:2870..5788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig80.16159.1 ID=mRNA_E_fasciculatus_S2_contig80.16159.1|Name=mRNA_E_fasciculatus_S2_contig80.16159.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2919bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:2870..5788- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig80:2870..5788- >mRNA_E_fasciculatus_S2_contig80.16159.1 ID=mRNA_E_fasciculatus_S2_contig80.16159.1|Name=mRNA_E_fasciculatus_S2_contig80.16159.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:2870..5788- (Ectocarpus fasciculatus EfasUO2)back to top |