mRNA_E_fasciculatus_S2_contig8.16156.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8.16156.1
Unique NamemRNA_E_fasciculatus_S2_contig8.16156.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8.16156.1 vs.
Match: FeThRed_A (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX7_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 6.100e-126
Identity = 191/214 (89.25%), Postives = 199/214 (92.99%), Query Frame = 1 
Query:   94 MILPASFVGATLVFFSGHAEAFITNGRAPLAQACYRLHGRAATPVPRAPRPRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPEGLKEGDPVTVIGKGLTFYHIRGHKDGFDPEGCVGQISSLYIMSKKHEGEFSTAHRPVVCTFPLPVKFKAHLEFGEVRKSTPEEMEENQKKIDAQNALDAIEQEKRDAAWAAKAAXXXXAKAAE 735
            MILPASFVGATLVFFS HAEAFITNGRAPL QACYRLHGRAATPVPRAPR RVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNP+GLKEGDP+TVI KGLTFYH+RGHKDGFDPEGCVGQISSLYIMSKK+EGEFSTAHRPVVCTF  P KFKAHLEFGEVRK+TPEE+E+NQ+ IDAQNALDAIEQ KRDAA AAK A    AKAAE
Sbjct:    1 MILPASFVGATLVFFSSHAEAFITNGRAPLVQACYRLHGRAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQLIDAQNALDAIEQAKRDAARAAKEAEEAAAKAAE 214
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8.16156.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
FeThRed_A6.100e-12689.25domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8contigE_fasciculatus_S2_contig8:75270..79648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2053
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003360.1
Cds size645
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8.16156.1prot_E_fasciculatus_S2_contig8.16156.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8 75363..78333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842460.7704716-UTR-E_fasciculatus_S2_contig8:75269..753621696842460.7704716-UTR-E_fasciculatus_S2_contig8:75269..75362Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8 75270..75362 +
1696842460.847032-UTR-E_fasciculatus_S2_contig8:78333..796481696842460.847032-UTR-E_fasciculatus_S2_contig8:78333..79648Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8 78334..79648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842460.781234-CDS-E_fasciculatus_S2_contig8:75362..753881696842460.781234-CDS-E_fasciculatus_S2_contig8:75362..75388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 75363..75388 +
1696842460.79276-CDS-E_fasciculatus_S2_contig8:75556..756691696842460.79276-CDS-E_fasciculatus_S2_contig8:75556..75669Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 75557..75669 +
1696842460.803664-CDS-E_fasciculatus_S2_contig8:76157..763631696842460.803664-CDS-E_fasciculatus_S2_contig8:76157..76363Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 76158..76363 +
1696842460.8149252-CDS-E_fasciculatus_S2_contig8:77181..772951696842460.8149252-CDS-E_fasciculatus_S2_contig8:77181..77295Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 77182..77295 +
1696842460.833089-CDS-E_fasciculatus_S2_contig8:78147..783331696842460.833089-CDS-E_fasciculatus_S2_contig8:78147..78333Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 78148..78333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8.16156.1

>prot_E_fasciculatus_S2_contig8.16156.1 ID=prot_E_fasciculatus_S2_contig8.16156.1|Name=mRNA_E_fasciculatus_S2_contig8.16156.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=215bp
MILPASFVGATLVFFSGHAEAFITNGRAPLAQACYRLHGRAATPVPRAPR
PRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPEGLKEGDPVT
VIGKGLTFYHIRGHKDGFDPEGCVGQISSLYIMSKKHEGEFSTAHRPVVC
TFPLPVKFKAHLEFGEVRKSTPEEMEENQKKIDAQNALDAIEQEKRDAAW
AAKAAAEAAAKAAE*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8:75270..79648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8.16156.1 ID=mRNA_E_fasciculatus_S2_contig8.16156.1|Name=mRNA_E_fasciculatus_S2_contig8.16156.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4379bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:75270..79648+ (Ectocarpus fasciculatus EfasUO2)
ATTGATTGAATCCTGATCCTCACAAGCGCAGCGGCACGTGCACTGGCCTT
GGTCATCCTCTTTCCACGACCCTCTCTCATTTGGTGCTCAGGGATGATTC
TACCGGCTTCATTTGTAGGGTGAGAAGATGTTGATGCACGACATGACAAG
GTGTGTTTGGGATGTGTACACGTGAGGGAGTGCGGTGTGTCATATTTGTT
GTGATCTCGCTTCCCGGCTCGCTCCCCTTCCCGCTCCCCTTCGTCCCTCG
TCCTCGCTCACCTCTCGGGGGCTACCCTCGTGTACAGGGCCACCCTAGTG
TTCTTCTCCGGCCATGCTGAAGCTTTTATCACAAACGGACGGGCCCCGTT
GGCGCAAGCTTGCTATCGACTGCACGGCCGAGCAGCAACGCCTGTGCCAA
GTAAGCTCTCCCTCCGCTTGGTAAACATGCGCGGTTGATCCCTCTGGTGG
ATGGGTAGGTTGCCAGTTCAAACCCGGCGCTCCGGTGTTAGTTGTTGACC
GCTGCTAGTTGTAGTTGAAAGCCTTCATGCGATGGTTCACTTCTTGGTTG
TGGAGGGTTGAGCAGTCTACTGCAGGACCTAGATATTCTTTGTTCGCAAG
GTTGAAGACGCGCACCGCCGAGGAAAAAGGCCAAAGGGGTCCTCAGAGAG
ATAGGCATACTGCTGTTATAACTTGTAAAAGAACCCTCTCTGCGTGACCC
CGCGCCCATGCATATGAGTAAAGAGCAAAGAGTGTTAAAGGAAAATTCAA
TGGATTATGCTCCCAAGGGAAAACACACGCGTGCCAGCGTGAGCCTTACG
TGAAGTTGCATACCTTTGGGTGCAGCTATGGAGCCGGTGGGCATGCCGAC
TCCTCAACTACAACTCCGATCTCGCCACCTGTTGGCAGGAGCGCCAAGGC
CGAGGGTTCTAATGGTATCGAACCAGGATGGAGTGCTCATGGACGAGTTT
GGAATTCCCATTTATGACGAAAACGGAGAAATCAACGATGACCAGTTGGA
CGATTACCAGAAGAACCCGGAAGGGTTGAAGGAGGGGGATCCAGTCACAG
TAATCGGCAAGGGTCTCACGTTCTACCACATCCGAGGTCACAAGGTGAGT
TAGGTTACCGGGGAGGTCCCAATCCGTTGACACGCTTGACACGCTTATCT
CTTTGCTGAAAGTGTGTACCTGAGTGGACTTCTTACGTGTGATAGGTGCA
GATAAAAATTTGCAGAAGGTATGGTTCTCGACGACATCAACGGGATATGC
ATGACACTGACAATAGCGTTTGGTTGGCGTTTGGGTGTTGGCGGTACAAT
GCGGTGAGGACATGGTCGGTCCCCGTTTGTAGCATTGTCCAACACTAAAG
TAGTTGCTAGCGCTACCAGAGCGTGCGAGGTCAGGTGGGGTCCTGGAACA
AGAGATGTTCGGTCGGTTTCTTCAATATTTGCATCCAAGGCGATTTTTCT
TACCCTCTGCACGATTTTGGTTAAACAGTTCAACCAGTCTGTTATTGCTG
GGCACCATCTTTGCTTTTACTTCCGGCTTCACGTCCGGAGGACGCCCCAC
CGGAATATTGTTTTGTTTTGCGTTGGTTTTTCTCGCTGCGAACCGTGGCC
GTTGGCTGCCTTCCTTGGTTTGCGTAATGCGGGTTATCCCCCGGCAAACC
AGCGGCTGCTGGGTGATCATTCTGCTCCGTAATTTTGGCGTGAAACCCCA
CCGCTGCAGGAATTCGCTGCTCAAGGTTTCATGTGAAGTGATCATGTGCA
GTGATCGCACCAAGCGAGCACTTTGCACCTTTCTCCCCCCCCCCCCCCCC
CAAAAGTCTTCATCCTATTGTACCTTTCACCTGTTTATGCCTGCGTGCTC
CATTACGCGCGAGGAATGTATTCATCTCGAAACCATGAAACCCTGTTTTC
CACTCGTCGCAGGACGGGTTTGACCCGGAGGGATGTGTCGGGCAGATCTC
GAGCTTGTACATCATGAGTAAGAAGCACGAGGGAGAGTTTTCCACTGCGC
ACCGACCCGTGGTCTGCACCTTCCCGGTAAGCATTGCGATCGACCAATAA
CGGGTAACGTCCACGCGACGCGTTCGTACTGTTACCTCACGAAAAAGCAC
GTGCACCACCCCGCGGGGATGTTTTTTTTATGATCCTTGTCGGTATGTCC
AAAATAACCCTCTCCCAAGTACTGGCGGTATCTGCACCGCAGGTGTTGAT
TGGCGTGCACAACTGAGGACGGTCTGCTTTGGTCTCGTGTTCTGCCAATA
ACCGGGGAAGTTGTACGTTTTCCTGCCCAATCGCGCTTACAGTATGACGA
ATGCGTCTCTAGATGGTACCTGGTCTTGCCTCGTTGGACGCAGCGTAGCG
AGAACCATGTGATCGAGCAGAAACATGTTGTGCCGGGAATGGACTTTGAC
GATGGTCACTCTCATGTGGAAGTAATGTGTCAACCTCTTCACGGCCTTGA
TACAGCGCTAGTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCGTTTTCACATT
AAGAACCGTTCCTGTCGCTGCTCATCTTGTAACTGGATTGGTGCAACTGA
CCCGGTTTCCTTGCGTGGTCGCGTGGTACATACTGCGAAACATCGAGGAT
ATTAAGAAAGACCCAGACAATCAACACCAACGGTAAATGCTGACTAGCGT
TGCAACAGCATGCCAAGTATCAGGCCCGTTGTACTAAATGCCTTGGGCCA
CGAGGAGGCACCCCGTGCAGGGATCTTCATGGTAAGAATTCGTTTAACAG
CTTGCTCCGGGTACGTAGTGGACGTCTTCATACTGCAACATAATTTGCCT
CAACGATGTTATCTGTCTGTACCCGCAGCTTCCTGTTAAGTTCAAAGCGC
ACTTGGAATTTGGGGAGGTGAGAAAATCAACGCCGGAGGAAATGGAGGAG
AACCAAAAAAAGATTGATGCCCAGAATGCACTCGATGCTATCGAACAAGA
AAAAAGAGACGCAGCCTGGGCTGCCAAGGCGGCGGCAGAGGCGGCAGCGA
AAGCAGCGGAATAGAGCCAAGTACGCCCTAGTAGATGTTATAGGGTGCAG
GCGGGAGGCTCCTTTGGTGCAGCCTGAACGGCAACTTGCAAACACGTACA
GGTACTGGCGATTTTCGTGCTGTCGTGCTTGAAGTGACGGAAGTCCTGAA
TGTGTTGCGCTAACGTGGAGAACAGGACGTAGTTATGAGTACCAAATAGG
TCGCGAAGTCGGGGCATGGATGAATGGCCTTTCGTTCTCCATTCAGCACC
CATGTTTTTTTGTTTTTTTTCCATTGTACTAGATACTGTCTTCAAGAGCG
AAGACAGGGTTGGTGAGCTGAGATGTGCCGGAGCAGTTTCCTGATGCCCG
ATGAAGGGCTTGCCACGTTTTTTAATTGTACACATGACAAAATGACCGCT
TGCTCGAGATTCTTTCAACTTGATTTCAAGTTCTGCGCAGTGAAGTTTGA
CTATTTAGCATCTGCAGAGGACAGGACAACGTCAAGTCTGTCAGTCTTGA
CTGAAGATTTGGTGATACCATGTGGAGTAGAACATAATATTCGAAGGTAT
GTTGAAACGCCACATACGCCCAACTTTGGACCCCCCCTAGCAGAAGTAGG
AAATGGTGCATGATCAGAGGTCAAATGACGTTGTCTGCCTTTAACTGATG
ACGCCTTCGTTTGTCCATTTGACTGCAACGACGAACCGGAGAAAAGCTGT
TGTACCTAGCCGGACTTCGGCAGTGCACTTTGCGTTCATAAGCATTGACC
TTGTGGTCGAATATTCCTCCCATTTAGTTGTACAAGGCAAAGAAATGACT
TGTACACGATGGGTTTGGTCATACCTGGCTGAGCTGTATTCGGGTGAACA
AGGATCTCAAGTCGATCTCCTCTTGTTGAGAATCCTGCGGCAGTTACAGG
AACTGATGAATCGCCTCAAGAAAACGGGACCGCCCTCGCTGACAAAGCGT
CCAATATCCGGGTGTACGTTTGACCCGTCTAGCTTTTCACCTGGCTCTGT
CCACGATCGGTGGCTTCGGCACTGGAACTAAGTTAAGCGATTGGTGGAAG
CTACTTCAAACCATGTCGCCTATGTAGCATGCAGCGTAATGTGGGAGACT
TTCACGACGAAGCAAGGCAGACTTCCTTCGACTCGAAACATCTTTCGAAC
AAGATTCGAAGACGTATCATATTTTTTTTATCTCTCGGCTGTCCAGGTCG
ACTATTTACTTAAAGTTAAGGGCTCTTCTGAGAGTGGCGGGGTGATAATA
CCACAAGTATGCACACGTGCGAGCGATCGCCCCCCCCCCCAGACCGACTT
TCACGGCTCGATTGAAGGCTTGTCAACCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8:75270..79648+

>mRNA_E_fasciculatus_S2_contig8.16156.1 ID=mRNA_E_fasciculatus_S2_contig8.16156.1|Name=mRNA_E_fasciculatus_S2_contig8.16156.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=645bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:75270..79648+ (Ectocarpus fasciculatus EfasUO2)
ATGATTCTACCGGCTTCATTTGTAGGGGCCACCCTAGTGTTCTTCTCCGG
CCATGCTGAAGCTTTTATCACAAACGGACGGGCCCCGTTGGCGCAAGCTT
GCTATCGACTGCACGGCCGAGCAGCAACGCCTGTGCCAAGAGCGCCAAGG
CCGAGGGTTCTAATGGTATCGAACCAGGATGGAGTGCTCATGGACGAGTT
TGGAATTCCCATTTATGACGAAAACGGAGAAATCAACGATGACCAGTTGG
ACGATTACCAGAAGAACCCGGAAGGGTTGAAGGAGGGGGATCCAGTCACA
GTAATCGGCAAGGGTCTCACGTTCTACCACATCCGAGGTCACAAGGACGG
GTTTGACCCGGAGGGATGTGTCGGGCAGATCTCGAGCTTGTACATCATGA
GTAAGAAGCACGAGGGAGAGTTTTCCACTGCGCACCGACCCGTGGTCTGC
ACCTTCCCGCTTCCTGTTAAGTTCAAAGCGCACTTGGAATTTGGGGAGGT
GAGAAAATCAACGCCGGAGGAAATGGAGGAGAACCAAAAAAAGATTGATG
CCCAGAATGCACTCGATGCTATCGAACAAGAAAAAAGAGACGCAGCCTGG
GCTGCCAAGGCGGCGGCAGAGGCGGCAGCGAAAGCAGCGGAATAG
back to top