mRNA_E_fasciculatus_S2_contig8.16147.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8.16147.1
Unique NamemRNA_E_fasciculatus_S2_contig8.16147.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 575 bits (1483), Expect = 1.780e-206
Identity = 295/316 (93.35%), Postives = 298/316 (94.30%), Query Frame = 1
Query:   13 PATLALLCLVAHSSTSAAASTGHGGAPSRAFLTRGRRSSALASSQARSYNPGPTTQGQCGHREDALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 960
            PATLA LCLVAHSSTSAAAST  GGAPSRAFL  GRRSSAL SS ARS NPGPTTQG+ GH EDALET ALVVRGGSDEDPSLTTLFMRVLMPGFRRD GGDGELDLEGGGLMRRLK+LVSGVFRKVRGSPV  TE +GEAKNV TKKKSKGKAKGA T SHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC
Sbjct:    2 PATLAFLCLVAHSSTSAAASTCQGGAPSRAFLAHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.960e-82
Identity = 139/255 (54.51%), Postives = 178/255 (69.80%), Query Frame = 1
Query:  211 ETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGD---GELDLEGG--GLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDL 957
            E R L++RGG     S   LFM++ +PG+  D  GD   G+  L     GL +R+K+ +S +F   +  P    +  G+ K  ++K  + GK        HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  +A  RPGQ+Q  WIYHD+ 
Sbjct:  123 EQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKG-GKGKGGSSKDDTVGK--------HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNF 367          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 219 bits (558), Expect = 1.330e-67
Identity = 101/156 (64.74%), Postives = 128/156 (82.05%), Query Frame = 1
Query:  496 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 960
            HL +++RPG+ NYRIQKELK+F+  PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP EYP KPP +YFLQ  P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK+LP DNA+HA+ + G Q   W+YHDD C
Sbjct:   54 HLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 218 bits (555), Expect = 3.310e-67
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 1
Query:  454 KKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 960
            KKS GK K   T++HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FP+EYP  PP+VYFL+  P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK++P DNA HAEA PG Q   W+YHDD C
Sbjct:   36 KKSGGKKKADATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.720e-66
Identity = 117/257 (45.53%), Postives = 166/257 (64.59%), Query Frame = 1
Query:  193 HREDALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQ-QWIYHDDLC 960
            H +  L T     RGG+ +  SL    MR      +R           GG +  R+K+ + G+     GS           ++ +      G+  G +   HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+ +FP +YP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK++P+DN  HA+  PG+ Q  W+YHDD C
Sbjct:   73 HPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKR-----------GGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.840e-65
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 1
Query:  484 KTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDD 954
            K +  L K  + GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T++GAE T+Y GE+++LRV+FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+PNLT  SLALSILSMLSSA+EKRLP DNA HA++ PG+ Q  W+YHDD
Sbjct:   86 KASRQLGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 202 bits (513), Expect = 8.880e-61
Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  436 KNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
            K V  KKK  GK+     A H+ K  +  N NYRIQ+ELKEF+ +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP +YPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LS A+ K LP DNA +   +PG  Q  W+YHDD C
Sbjct:   40 KPVVAKKKPAGKSA---AAVHIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.700e-59
Identity = 118/255 (46.27%), Postives = 161/255 (63.14%), Query Frame = 1
Query:  205 ALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGV--FRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
            A+ TRAL V GG++   SL       L+ G     GG G L     G++R+  ++   +  F K  G    +  ++   K V  KKK +  A+ +      +          RI +EL +F+ NPPD CKVSVGKN+ VWI+T++GAEGTI+AGEK++LRVSFP +YPT PP+ YFL+  P P+H H+YTNGDICL+LL +  W+P +TV  L+LSILSMLSSAK K +P+DNA HA + PG+ Q+ W+YHDD C
Sbjct:   86 AMHTRALRVSGGANAT-SLAPEAKAGLLDG-----GGGGSLATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATK---KKVAAKKKRRSPARASPAQRQAQ----------RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLGN-GWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.780e-59
Identity = 98/156 (62.82%), Postives = 120/156 (76.92%), Query Frame = 1
Query:  496 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
            HL    +  + NYRIQKEL+ F+ +PP    V+VGKNIRVWI+TI+GA  TIY GEK+RLR+SFP  YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P +T  SLA+SILS+LSSA+EK LP DNA H++ +PG  Q  WIYHDD C
Sbjct:  196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348          
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3E3N1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.370e-58
Identity = 95/165 (57.58%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  469 KAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
            K+K      H++K  +  + NYRIQ+ELK F+++PP   KV VGKNIRVWI+T+SGA+ TIY GE F+LR++FP  YPT PP+VYFL  P  P H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LSSA+ K LP DNA H++ +PG+ Q+ W+YHDDLC
Sbjct:   42 KSKSTLANLHVKKELKATSPNYRIQRELKSFLSDPPPNLKVKVGKNIRVWIVTMSGAKDTIYEGETFQLRIAFPAAYPTVPPSVYFLP-PNIPLHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHSQNKPGEYQKDWVYHDDLC 204          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquitin-conjugating1.780e-20693.35enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Ubiquitin-conjugating3.960e-8254.51enzyme/RWD-like protein n=1 Tax=Tribonema minus Ta... [more]
UBC1.330e-6764.74core domain-containing protein n=1 Tax=Vitrella br... [more]
UBC3.310e-6762.94core domain-containing protein n=1 Tax=Chromera ve... [more]
Ubiquitin-conjugating2.720e-6645.53enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Hypothetical3.840e-6566.46protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical8.880e-6158.52protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Hypothetical1.700e-5946.27protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical2.780e-5962.82protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.370e-5857.58protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8contigE_fasciculatus_S2_contig8:12229..16343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score576.6
Seed ortholog evalue7.1e-162
Seed eggNOG ortholog2880.D7FQY7
Preferred nameUBC18
Model size963
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categorychloroplast
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Exons8
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0427@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme
Ec32 orthologEc-09_003260.1
EC2.1.1.297,2.3.2.25
Cds size963
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8.16147.1prot_E_fasciculatus_S2_contig8.16147.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8 12229..16343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842459.3224385-CDS-E_fasciculatus_S2_contig8:12228..124081696842459.3224385-CDS-E_fasciculatus_S2_contig8:12228..12408Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 12229..12408 +
1696842459.3423338-CDS-E_fasciculatus_S2_contig8:13004..132511696842459.3423338-CDS-E_fasciculatus_S2_contig8:13004..13251Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 13005..13251 +
1696842459.3579583-CDS-E_fasciculatus_S2_contig8:13782..139011696842459.3579583-CDS-E_fasciculatus_S2_contig8:13782..13901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 13783..13901 +
1696842459.3685546-CDS-E_fasciculatus_S2_contig8:14394..144591696842459.3685546-CDS-E_fasciculatus_S2_contig8:14394..14459Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 14395..14459 +
1696842459.3776665-CDS-E_fasciculatus_S2_contig8:14833..149781696842459.3776665-CDS-E_fasciculatus_S2_contig8:14833..14978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 14834..14978 +
1696842459.3870707-CDS-E_fasciculatus_S2_contig8:15483..155571696842459.3870707-CDS-E_fasciculatus_S2_contig8:15483..15557Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 15484..15557 +
1696842459.3973465-CDS-E_fasciculatus_S2_contig8:15864..159381696842459.3973465-CDS-E_fasciculatus_S2_contig8:15864..15938Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 15865..15938 +
1696842459.4078352-CDS-E_fasciculatus_S2_contig8:16284..163431696842459.4078352-CDS-E_fasciculatus_S2_contig8:16284..16343Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 16285..16343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8.16147.1

>prot_E_fasciculatus_S2_contig8.16147.1 ID=prot_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=321bp
MVGVPATLALLCLVAHSSTSAAASTGHGGAPSRAFLTRGRRSSALASSQA
RSYNPGPTTQGQCGHREDALETRALVVRGGSDEDPSLTTLFMRVLMPGFR
RDTGGDGELDLEGGGLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTT
KKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVG
KNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPK
HQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNA
THAEARPGQAQQWIYHDDLC*
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mRNA from alignment at E_fasciculatus_S2_contig8:12229..16343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8.16147.1 ID=mRNA_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4115bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:12229..16343+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGGCGTGCCCGCAACATTGGCGCTCCTGTGTCTGGTCGCACATTC ATCAACATCGGCCGCCGCTTCCACCGGTCACGGAGGAGCTCCTTCAAGAG CTTTCCTCACCCGCGGCAGGCGGTCTTCGGCCCTGGCTAGCTCTCAAGCT CGGTCATACAACCCTGGCCCAACAACACAGGTAGGTTTGCATTTTGTCTA GGCGAGGGCAACCTTGTTCCTATGCTGATTGTCCTTTGTCCAAGGTGCTT TTCTGTTGCGAAGTTGTTTGCGTGCCCACAGACGTTGCGTGTTGCCATGG GGCTACTTGTATGATGTCACGTGTCGGGAATGTCGGGAGATGATTTACTC GCGGTTGTATTTCAGGCCTTCTGTCCTTCACAGGTTCGCCGTTTTGCAAG GGCTAAGACGTTAGAAATATATTGCCGTCCTAAATACACTGCTTGGCAAT TAGCTCTTAATAAATGAGGAATCTCCCCTGCATCTCTCAGTGCCATTGGA TCGCTGCATCCCAAGCACACTGATCTTGTTGACATTCATTGCGCGCCGAC TTCCCACCGAGAAACTCCCATATCCCGTATGTTTCGTCAACTTTGCTTCA CCCCTAAACTTTGACCACGACCAAACAGACTCTCATAATTTGGAAAAAGT GGCTCATGCACGATACAAGGTGACGATGGATCGACTTTTTGTCTCGAGGG ACACGGATGAGTAATTTGCTCAACGGTTCGACACATCATGACTACCAACC CCTCGTTTTGTCTTCCTCCACATCAGGGACAGTGTGGCCACCGCGAGGAC GCATTAGAAACGCGTGCCTTGGTTGTGAGAGGAGGCAGCGACGAGGACCC ATCCCTCACTACGCTCTTTATGCGAGTCCTCATGCCAGGCTTTAGACGAG ACACAGGCGGGGACGGGGAGTTGGACTTGGAAGGAGGTGGGCTCATGCGA AGGCTGAAGCAGTTGGTGTCCGGGGTGTTTCGGAAAGTGCGAGGGTCGCC GGTGGCGAGCACTGAATCCGAAGGTGAGGAGAGTACCGCGATGATATGCA TACTTTGTAAGGACTTTTTTTACGCACCGGACGACTAGGTATGGGCAGCC TCCCCAGGGCGTTGGCATCTTGTCTTGTATCCCCTTTGGATGCGTGAGTG AAAGGTGTGTACGACCTGGTGGGAGAAAAATAGGTGACTGTTTGCTGGAA TAGCCTGTCTTCTCGCTTGGTTGTGTTTGTAGTCGGCGCGGGTAGGGTAT TGTTCGCAGCGCTGGTACGCGAGAAGGCTTTCGAATTTTGGTCGACCGTG CACCCGACTGATTGCAGGTGGCGCTGCCCAACCCTCTGCTGTTATCTACG ACTTCGGCTTTATGATTCCCGAGCCCTCACCTATTGATCTCTGTTACGTC TCAGCACAGCTATAACTTGCCTGACCTGCCTGGCGCGGATGCGCGTGGGA TTTTCTGGTTTAGGAAATTGTAAAATATCGCTCTACGTTAGCTAACACCC CATCGGGGCGAGATATTCTAATTTTGTCCGATTGTGCAATACTTCACCTG AAAGGTGAGGCGAAAAATGTAACGACCAAGAAAAAGAGCAAGGGGAAAGC TAAGGGAGCAAAAACTGCGTCCCATCTGGAGAAGACGTACCGTCCAGGGA ACGCCAACTATCGGATACAGAAGGTACGTACTCGTACGCACCCATCGCGC AGCGTGTTGTTGCGCTACGTCGTGTGGGATGTTGATGTGGCACTTGCGAA GATGATCGGGAATCGCCCCGAGGGTCTGAGCATGTTGACGCTGTCGTAAT TGCTGTTTTTTGTTTCCCGCGCAAATCCTCGCTCCCTGCTTGGCTAAGCA GTTGCCGAAGTAGACCAAGTTTTATCGTGAGAGACGTCTGGGAGGCCAGT GAGGGCTTGGATGAATAGTTCAACAAGGTTTGTTCTGGTTATAGTATTGC TCAGAATGTATGTTTCCAAAGCAAGAAGCGGAGCACGGCAAATCGGCTTG TCGATTGTTGGTGTTTGGCCGACGATGACTTAGACTCCCAAAAGGGCGTT CAGTACTACAACACCGAACCGAACGTCTGCGTTCAAACTCCATTATTTGT CAACTTGAAATAGCACAGAACTAAACCTGGTGCTGTTTCCCCCCTCCCGC ACACCGCTTTATTCAGGAACTAAAAGAGTTCATGGCCAACCCGCCTGATT GCTGCAAGGTCAGCGTCGGTAAGAATATCAGGTAAGAGGGAGAGAGGCAT GCGGGTCGATTTGTCGTCATGTCCAGCCCTGGTACCGGCCGTGAATTCTC TCTTACCGGTATCTGGTCTGCCCCATGCATCATATATTGATGGAATTACT CGCGACGAGACGGATGCGCCCTCCGCGAAATGGCACTTGTATTGCAGAGA GAACATCACGTGTGCGTATCGCGTTGGCCGCGTTTCGGTGAAGCCAGGTG TCATTCAAATGATGTCGTGAACTCACCAGGGGGTACATTTTTTGTCTGAA TATAGTACGCGCAACGATGTTCGCAATTTCTTCGCGAAAAAATGCACGAC AAACGTGTTTTACACCACCCCCCGTTATCCCCTTCTAAATGTGGCTGGCT TGTAGAGTATGGATCATCACCATCAGCGGGGCGGAAGGCACCATTTACGC AGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCCCGAGGAATACCCGACCA AACCGCCGGCGGTGTACTTTCTGCAATCTCCGCCGCCGCCGAAACACCAG GTAGGCCAGCCTTATCATTGACCCGATGTCATACACGCTGTCTGCGGTCG ATCAACCAGTCAAGTGTCGTCTCGGTTTGGCTTAGTCGAAATATGTTCGA CGTGCAGCAGACATGTATCAGTGCCCCCCACCGCCACGTGAATGGTGTCA TGTTTTTTTTTTTTTCGATAGTTCCCGCATTGACTGTGGGCAACCTGAGC GCTTTTCAGAAACAGGCCACAAGACGGCTTCCTAACGTCAGCTCGTTCCC TTTCGTGACTTGCCCAATACGTGTACATGGCATTTTCAATCGACAAAAAA GGTACAAGCATTTACTATGCTGTTGTTCCTACGCCGTCAAAGTAAGCAGC TCGTGTAAACATGTGTTTACGCGGCCGAAGAACATGGCTATCTTGCTGTT CCATACATTTCACGTCCCCAATTCCTGCCTATGTCCTAGGTTATATAGTT GTCCCCTTGGTTCAATTGCATCGCATCGCCTTCCATCGCCCGTTTCCCAT CGCAGCACATCTACACCAATGGAGACATTTGCCTGAGCTTGTTGAGCTCC AGAGACTGGAAACCAAATCTCACCGTCATGTAAGTCATTAGGCAGACCAA TGGGTATGCGCATGGCATGTTCACTGTGCCCATGTGCTCAAATACGCGGG CATTCGATGTTCGGCGCGCAATCTAATCGCACATGTACAGCATGGACAAT TGAAGAGTGCGAACATTTCCTCCCACGCTAGCCTCTCCTTACTTTCGCAA TAGGCAGCAGCAGAAGATGAGCCGATATCTCTGAACAAGTTGCACGCTCT ATTCGGAAGGCAAGTTCTGACATGCAATCCCGTCGTGTTTGTGTGTTTTG GCCTCGTTGTGGCTTGCACGTCAATACTTTGTCAAGGTCTCTGGCGCTGA GCATCCTCAGCATGCTCTCTAGCGCCAAGGAGAAGCGCCTCCCAGAAGAC AATGCTACACGTGAGTCTGGGTAGCGGGAAGCGAAAAAGTCTTGACAGTT TCAGTTGCCGATGAACCAAGAAGTTTACAGGATTGATTTTCGTCCCCCAA GTACAACCAGCCTCCCGGACAACGCCCTTCCACCACGGTATTTTTGGTGC ATTTTTTACGGTCGTTGTAGTGTTGTGGATCGCTTGTTGTGACCGCCAAC AAAAAAATCGTTCTCTCAGTAGTTACCGATGCTGTCCGAAACCTCCCCTG TCTTTTGGCGGAGCTAAATTCATCCCGCGACAGGGAATTCAATGACCTGC CTGTGTTGCTCCTCTGTTTGCTCTGGCACTACTGCGTCGCGCCTTTTTGT ATGCAGATGCCGAAGCGAGACCAGGGCAGGCTCAACAGTGGATCTACCAC GATGATCTGTGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8:12229..16343+

>mRNA_E_fasciculatus_S2_contig8.16147.1 ID=mRNA_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:12229..16343+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGGCGTGCCCGCAACATTGGCGCTCCTGTGTCTGGTCGCACATTC
ATCAACATCGGCCGCCGCTTCCACCGGTCACGGAGGAGCTCCTTCAAGAG
CTTTCCTCACCCGCGGCAGGCGGTCTTCGGCCCTGGCTAGCTCTCAAGCT
CGGTCATACAACCCTGGCCCAACAACACAGGGACAGTGTGGCCACCGCGA
GGACGCATTAGAAACGCGTGCCTTGGTTGTGAGAGGAGGCAGCGACGAGG
ACCCATCCCTCACTACGCTCTTTATGCGAGTCCTCATGCCAGGCTTTAGA
CGAGACACAGGCGGGGACGGGGAGTTGGACTTGGAAGGAGGTGGGCTCAT
GCGAAGGCTGAAGCAGTTGGTGTCCGGGGTGTTTCGGAAAGTGCGAGGGT
CGCCGGTGGCGAGCACTGAATCCGAAGGTGAGGCGAAAAATGTAACGACC
AAGAAAAAGAGCAAGGGGAAAGCTAAGGGAGCAAAAACTGCGTCCCATCT
GGAGAAGACGTACCGTCCAGGGAACGCCAACTATCGGATACAGAAGGAAC
TAAAAGAGTTCATGGCCAACCCGCCTGATTGCTGCAAGGTCAGCGTCGGT
AAGAATATCAGAGTATGGATCATCACCATCAGCGGGGCGGAAGGCACCAT
TTACGCAGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCCCGAGGAATACC
CGACCAAACCGCCGGCGGTGTACTTTCTGCAATCTCCGCCGCCGCCGAAA
CACCAGCACATCTACACCAATGGAGACATTTGCCTGAGCTTGTTGAGCTC
CAGAGACTGGAAACCAAATCTCACCGTCATGTCTCTGGCGCTGAGCATCC
TCAGCATGCTCTCTAGCGCCAAGGAGAAGCGCCTCCCAGAAGACAATGCT
ACACATGCCGAAGCGAGACCAGGGCAGGCTCAACAGTGGATCTACCACGA
TGATCTGTGCTAG
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