mRNA_E_fasciculatus_S2_contig7978.16132.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7978.16132.1
Unique NamemRNA_E_fasciculatus_S2_contig7978.16132.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV7_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.470e-82
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 3
Query:    3 LESVGAGGMDVSSADGVSMLGGGPSGLRGADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVGFVG 452
            LESVGAGGMD SS+DGVS+LGGG SG+RGADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQK QSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVGFVG
Sbjct:  610 LESVGAGGMDASSSDGVSILGGGSSGMRGADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKPQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVGFVG 759          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG22_HETAK)

HSP 1 Score: 109 bits (272), Expect = 3.250e-23
Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   75 SGLRGADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            S L G+   D+ K + RLKEM+KE+I  +R+ VYLL GY++D+     R  LRLRSM+AE ESD L+FQ       GGLEL ET  A +   K+ +YL +C+S+PAFLS++T  LFE QTF G
Sbjct:  151 SRLEGSSGVDSSKLNQRLKEMFKEQIARFREAVYLLFGYKLDMGGAHARPKLRLRSMFAENESDDLLFQWGK----GGLELCETDFATKIDRKVFVYLHQCNSVPAFLSNVTLNLFEAQTFQG 269          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFY6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.030e-20
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 3
Query:   87 GADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFV 440
            G++  D  K   RLKE++K++   +R+ VYLLTG+ ID+ +D   Q LR+RSM+AE+E D L+F+ +   EGG L L+ET    +  + I  YL+KC+S+PAFLS+LT +LFEKQTF+
Sbjct:  323 GSNQQDLGKRHERLKELFKQKTKAFREAVYLLTGFMIDMTQDQNPQ-LRVRSMFAEREDDHLLFKWQPDVEGG-LHLLETDFCSRIDENIFAYLKKCNSVPAFLSTLTLDLFEKQTFL 438          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB74_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.420e-19
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  108 KKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQ--MLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQT 434
            +K +VRLKE++K RI+ +R  VYLLTGY++D++     +   L LRSMYAE+E D L+ Q K     GGLEL+ET    +   K+  YL  C SIPAFLSSLT +LF++QT
Sbjct:   50 RKKNVRLKEVFKVRIDKFRNAVYLLTGYKVDMVAGSAGKDDKLYLRSMYAEREDDHLLMQMKK----GGLELLETEFCKRIDPKMFAYLTTCHSIPAFLSSLTLDLFDRQT 156          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B946_HYAAE)

HSP 1 Score: 101 bits (251), Expect = 7.240e-19
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   93 DTPDA-KKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            DT D  KK + RLK+++ ++I  YR+ VYLLTGY++DL K    +MLRLRSMYAE + D L+ + ++    G LEL+++    +   ++  YL  C S PAFLS+LT  LFEKQTF G
Sbjct:  633 DTVDGLKKLNQRLKQVFGDQIRQYREAVYLLTGYKVDLKKSNGMEMLRLRSMYAEHDDDDLLIRMEA---SGSLELLDSDFCSRINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQG 747          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Mitotic (spindle assembly checkpoint MAD1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHR3_PARCT)

HSP 1 Score: 97.8 bits (242), Expect = 9.960e-19
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   90 ADTPDAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQT 434
            A    A++ + RLKE++ ++I  +R+  Y LTGYRID+++D   Q  +L+SMYAE+ SDCL+FQ  +    G   L+ET  ++Q    I+ YL +C+SIPAFLSS+T ELFE+QT
Sbjct:  217 AQVSSAERKNKRLKEVFAQKIQEFREACYSLTGYRIDVVQD---QQYKLKSMYAERSSDCLLFQCNA---NGKTMLLETDFSLQVKSLIDQYLIQCNSIPAFLSSVTLELFERQT 325          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJQ4_GLOUD)

HSP 1 Score: 100 bits (248), Expect = 1.730e-18
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  108 KKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            K  + RLKE+++E+I  YR+ VYLLTGY++DL K    ++LRLRS+YA+ + D L+ + ++    G LEL+ET    Q   ++  YL  C S PAFL++LT  LFEKQTF G
Sbjct:  653 KLLNKRLKEVFREQIQQYREAVYLLTGYKVDLKKSNGMELLRLRSVYADHDDDELLVRMEAD---GALELLETDFCAQINQRVFAYLTTCRSFPAFLATLTLHLFEKQTFQG 761          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: MAD1L1 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VSB4_SYMMI)

HSP 1 Score: 95.5 bits (236), Expect = 2.790e-18
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  102 DAKKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMK-------DPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            D+ K + RLKEM++ERIN YR+ VYLL GY+++L          P  Q L+LRSMYAE   D LVFQ K    G  LEL+ETP A    + +   L+  +++P FL++++ +LFEKQTF+G
Sbjct:  165 DSNKMNARLKEMFRERINSYREAVYLLFGYKVELYSADVAGGGSPYPQ-LKLRSMYAESPDDSLVFQMK----GDILELMETPFATGLDESLLHTLQTSNAVPVFLANVSLDLFEKQTFMG 280          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFY8_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 2.900e-18
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  108 KKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            KK + RLK+++ ++I  YR+ VYLLTGY++DL K    +MLRLRS+YAE + D L+ + ++    G LEL+E+    Q   ++  YL  C S PAFLS+LT  LFEKQTF G
Sbjct:  609 KKLNQRLKQVFGDQIRQYREAVYLLTGYKVDLRKSNGIEMLRLRSVYAEHDDDELLVRMEAD---GSLELLESDFCSQINQRVFAYLTACRSFPAFLSTLTLHLFEKQTFQG 717          
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Match: Uncharacterized (protein n=46 Tax=Phytophthora TaxID=4783 RepID=W2RBQ8_PHYPN)

HSP 1 Score: 99.4 bits (246), Expect = 2.990e-18
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  108 KKFSVRLKEMYKERINFYRQMVYLLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVETPLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVG 443
            KK + RLK+++ ++I  YR+ VYLLTGY++DL K    ++LRLRS+YAE + D L+ + +S    G LEL+++    Q   ++  YL  C S PAFLS+LT  LFEKQTF G
Sbjct:  633 KKLNQRLKQVFGDQIRQYREAVYLLTGYKVDLRKSNGMELLRLRSVYAEHDDDELLVRMES---NGSLELLDSEFCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQG 741          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7978.16132.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.470e-8296.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV7... [more]
Hypothetical3.250e-2350.41protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical4.030e-2048.31protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Hypothetical1.420e-1950.45protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Uncharacterized7.240e-1947.46protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Mitotic9.960e-1946.96spindle assembly checkpoint MAD1-like n=1 Tax=Para... [more]
Uncharacterized1.730e-1847.32protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
MAD1L12.790e-1846.28protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Uncharacterized2.900e-1848.21protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized2.990e-1847.32protein n=46 Tax=Phytophthora TaxID=4783 RepID=W2R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7978contigE_fasciculatus_S2_contig7978:3724..6795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score270.0
Seed ortholog evalue6.3e-70
Seed eggNOG ortholog2880.D8LIV7
Preferred nameMAD1L1
Model size1567
KEGG rclassRC00296
KEGG koko:K06638,ko:K06679,ko:K18203,ko:K18438
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04110,ko04111,ko04113,ko04114,ko04914,ko05032,ko05166,ko05203,map00230,map04110,map04111,map04113,map04114,map04914,map05032,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000922,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005829,GO:0005856,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007162,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008285,GO:0008608,GO:0009607,GO:0009719,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015630,GO:0016043,GO:0022402,GO:0022407,GO:0022408,GO:0030071,GO:0030155,GO:0031570,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0042127,GO:0042129,GO:0042130,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043515,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044732,GO:0044774,GO:0044877,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0046907,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050000,GO:0050670,GO:0050672,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051128,GO:0051129,GO:0051169,GO:0051179,GO:0051234,GO:0051249,GO:0051250,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070013,GO:0070663,GO:0070664,GO:0070727,GO:0071173,GO:0071174,GO:0071216,GO:0071459,GO:0071495,GO:0071840,GO:0072396,GO:0072414,GO:0072417,GO:0072476,GO:0072479,GO:0072485,GO:0072686,GO:0090068,GO:0090231,GO:0090232,GO:0090235,GO:0090266,GO:0090267,GO:0090268,GO:0098687,GO:0098813,GO:0099606,GO:0140014,GO:1901925,GO:1901976,GO:1901978,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903037,GO:1903038,GO:1903047,GO:1903504,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons3
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG4593@1,KOG4593@2759
EC2.1.1.233,3.1.4.17,3.1.4.35
Cds size429
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.6335976-UTR-E_fasciculatus_S2_contig7978:3723..48351696842457.6335976-UTR-E_fasciculatus_S2_contig7978:3723..4835Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7978 3724..4835 -
1696842457.6907704-UTR-E_fasciculatus_S2_contig7978:6769..67951696842457.6907704-UTR-E_fasciculatus_S2_contig7978:6769..6795Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7978 6770..6795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.6526525-CDS-E_fasciculatus_S2_contig7978:4835..49371696842457.6526525-CDS-E_fasciculatus_S2_contig7978:4835..4937Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7978 4836..4937 -
1696842457.6642485-CDS-E_fasciculatus_S2_contig7978:5729..58951696842457.6642485-CDS-E_fasciculatus_S2_contig7978:5729..5895Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7978 5730..5895 -
1696842457.6745603-CDS-E_fasciculatus_S2_contig7978:6608..67691696842457.6745603-CDS-E_fasciculatus_S2_contig7978:6608..6769Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7978 6609..6769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7978.16132.1prot_E_fasciculatus_S2_contig7978.16132.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7978 4836..6769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7978.16132.1

>prot_E_fasciculatus_S2_contig7978.16132.1 ID=prot_E_fasciculatus_S2_contig7978.16132.1|Name=mRNA_E_fasciculatus_S2_contig7978.16132.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=143bp
MDVSSADGVSMLGGGPSGLRGADTPDAKKFSVRLKEMYKERINFYRQMVY
LLTGYRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKSQSEGGGLELVET
PLAVQHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFVGFVG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7978:3724..6795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7978.16132.1 ID=mRNA_E_fasciculatus_S2_contig7978.16132.1|Name=mRNA_E_fasciculatus_S2_contig7978.16132.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3072bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7978:3724..6795- (Ectocarpus fasciculatus EfasUO2)
AGCTGGAGTCGGTGGGGGCGGGAGGGATGGACGTATCGTCCGCTGATGGG GTTTCGATGCTAGGAGGGGGGCCCTCCGGGTTGAGAGGGGCGGACACCCC GGACGCGAAAAAGTTCAGCGTCCGGCTGAAGGAGATGTACAAGGAGAGGA TCAACTTCTACCGACAGATGGTTTATCTCCTCACCGGGTGAGGGCGAGAT GCGATACGGGGGTGTTTCAGGGAGGGAGGTTTCGTCAAGAAATTATTTGC TTTCAATTCGCTTCCTGCCACCGCTTGCTGCTGAGAGAGTTAATTGTTTG TATGTTTGAGTGGACGAAGGAGGTAAAAACTGCCGCCGGAGAGGGCTATT GGTGCCGGCAGATTACCTGCCTCTTCTCTGGCGCGCAGGGCGAGGGAGTC TAACTAGGCTCTTTGGTTTTGGGGACCTCGAAGATTTGTTAGCAGTGCTT TGGTGCAAAACAGGGGATCGATCAGGCTGTGCTGCCGACGGTGCCCCATC CCCCGACCCGTCCCCTGGTCTGCCTACGCTTAGAAAAAGTGACTGTACCA CGAAGCAAGACCAAGCAGGGGGCACGCAGACCCTAACCCCAAATTAGCCG ATTCTATACTTTATCCAATACAATAGTGGTCCGGGTATAATGCCGGTTGA AAATGCCGGTCGCCCGGTATCATGCCGGTGAAATTGTCTGGCACAGATGG AATGTTCAAGTTGTTTCATATGGCTCTGGATAATGCGGGTTGCCCACTAC AGTGCCGGTGAAATCGGCTGGATCGCGCCGGCATTATACCTGGACCACTA CTTGTATGTTTGCTTACAAAAGCCTTCGTAGACTACCGCGTCCTCCCCCC CCGAAAATTGTGTACGAAACCCACGAGTATCACATTTGTCGCTCGATCAG GTATCGGATCGACCTGATGAAGGACCCTACTCGGCAGATGCTGCGGCTTC GGTCCATGTACGCCGAGCAGGAGTCCGACTGCCTCGTGTTCCAGCAGAAG TCCCAGAGCGAGGGGGGTGGGCTGGAGCTAGTGGAGACGCCTCTCGCCGT GCAGCACATGGACAAGGTGAATCGATCGGGGCTATCCGGTACCGTAGGTG ACACAAGATACCACACCCCCCGGAACGATTTTCAAAACTCGATTGCCTAC TCCACGACGAAGAGGATGCATTAATGAAACGTTTTTTCGGAAACACGTCG GCGAGACGGCTTCTACGACGTCGCTCCTCGGCGTTGCAACTTTTACTCGT GCTGTGGAGAAATGGAGCTTTGAAAATCCGTCCGGGGGTGTGGTGTCTTG CGTCATGTCACCTACGGTAGTCTGGTGCTTGCTTTTCCTTCGGCTTGAGC CCACGCGTGTTGTGACGTCAGGGGCGGGTTGGTGCTTGGCGCGCGGAAAA GGGTGTTGCTGAGGATAGAGAATGGACGAAGAATTGTGTGTAATGCATGC TGGATGCAGCACGCTGTAGGCAAGGGGGGGAAGGTCTGAAGTTGGAGACC CCTATTTCTTGGGTGAGAGTATACGGTAGGCAAGTGACGATGTAACTCAC ACGTTCCCGTGGCGAAAGACGCTGTGATTTCACCTCATGACATCCGGGAT GCCCAATCAAACCCATGGCATATCTGGTTTGACACAGCGAGCGCAAGGGT GATATCGTGATATCCAGCTTCTGGCTCATCCTTGCGAAACGTAGCCTGGG CCGGCGAAAACCCGGCATATGTATGGCTCCGTCGTAGTGATGAGAATCTA TGGTCTACCGACTACGGCATGCGTTTACATTAAAAAGTCCCCCCCCCCCC CCCCTTCACTCGAATGTCGTGTGTCTGACTCTCCTTGGTTGTCCCCCCCC CCCGGCAGATCAACATGTACCTTCGTAAGTGCGACTCCATCCCGGCCTTC CTCAGCAGCCTCACCGCTGAGCTCTTCGAGAAGCAGACGTTTGTGGGTTT TGTGGGGTAGGGTTACCCGTCAACCTTGCGTGACGATGCCAGCTAATATA TGTGCTTCATCTTCACCCACATCGCTGATTTCAATTGGCTTGCGGACGAG CATATCTTTTGAGGGTAAGTCAGCCGAATCGACCGGTCAAGTGTTTGATC CGTACGGACAGATGAAGGTACTGGGTGGAGAGATCGGGACGATTTTTAAT GTGAAGACAGCAACGACAACGACAATAACGATAGTGTACCTCTGTGACTA TGAACGTAACGGACGGATGGCGATCGTTGGAGAGCAGGCGTCCGCCAGCC TGACGCCGGGGAGGTGTTGGACCAATCAGAGGTCGTCCCCAGCCGAGCCC GCGGAGTGCGGGGACATGATAAAATTGGTTTTGTACAATAGCTCGTTTGG ATTGTTCGTCCGTGCTGTGGGTTGTGGTGATATCGCCACGGTTCGAAACG GCCTTTGAATGCTGTTTTCACGACCGATTTAGCTTGTGAGGGCTTTCTTT GCCTGCCTGGTCTTTGCAACTTAGAAGAAACGTACAAATAGTACCTCAAT GGGGCAGCTTTCTTAGCGGGCAGCAAGCTCGCACAGAGGGGGGGGTCATA GAAGAAGAGGCTTGTGGTGAGAAGAGCCAACAAGTCTCGAACGACGACGC GGACACGGTATAGTGTGGTCGGCGTATGGACCCGGGCCCGGTTTGAGAAG TGTCCCCCCCCCCCTTTCGTGTATGGCGCGCGGGGGGGGGGGGGTCGAGG TTGAGGTTGTTTGGTTGGTTTACGTTTGGTAAATGCAGGTGGGCTTTGAC AACCTGTAGGGTGTGGCTGTTTGGCAAAAGACTGGTGTCGGTGTTTCTTC GGTATTCGCGCTATGCAGCCCCAGGGGGATGTTGTTGTTGTTTCTTCAAC ATACTCCCTGTAGGCGTGCTTCAACAAGCTGTCGGCGTACAATCAGTACA TGTAGTGACACCGGGGCACCCTCCGTGTACCTCGTTTGGAACCAGGACGA ATCTCGGCACGCTCACAAGTCGCCGTACATGGACAGCTACGATGCTGTGT TCTGCAAAAAAGCAAGAAGCGAGATATGTGCTACATGCTACATAGAAATC GATACGGTTTTGTCCATCGAAT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7978:3724..6795-

>mRNA_E_fasciculatus_S2_contig7978.16132.1 ID=mRNA_E_fasciculatus_S2_contig7978.16132.1|Name=mRNA_E_fasciculatus_S2_contig7978.16132.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=429bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7978:3724..6795- (Ectocarpus fasciculatus EfasUO2)
ATGGACGTATCGTCCGCTGATGGGGTTTCGATGCTAGGAGGGGGGCCCTC
CGGGTTGAGAGGGGCGGACACCCCGGACGCGAAAAAGTTCAGCGTCCGGC
TGAAGGAGATGTACAAGGAGAGGATCAACTTCTACCGACAGATGGTTTAT
CTCCTCACCGGGTATCGGATCGACCTGATGAAGGACCCTACTCGGCAGAT
GCTGCGGCTTCGGTCCATGTACGCCGAGCAGGAGTCCGACTGCCTCGTGT
TCCAGCAGAAGTCCCAGAGCGAGGGGGGTGGGCTGGAGCTAGTGGAGACG
CCTCTCGCCGTGCAGCACATGGACAAGATCAACATGTACCTTCGTAAGTG
CGACTCCATCCCGGCCTTCCTCAGCAGCCTCACCGCTGAGCTCTTCGAGA
AGCAGACGTTTGTGGGTTTTGTGGGGTAG
back to top