prot_E_fasciculatus_S2_contig7965.16119.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig7965.16119.1
Unique Nameprot_E_fasciculatus_S2_contig7965.16119.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length118
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.440e-53
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0
Query:   33 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 117
            MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYE+DADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 85          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 8.180e-45
Identity = 69/83 (83.13%), Postives = 80/83 (96.39%), Query Frame = 0
Query:   33 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 115
            MA RL+PLELIDKCIGS+LWIIMKGDKELVGTLRGFDDYVNMVL+DVTEYE+DA+G +R ++L+QILLNGNNVA+LVPGGSP+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 1.230e-40
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 0
Query:   36 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 115
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDVTEYE+  +G KR++ +DQ+LLNGNNV +LVPGGSPE
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPE 83          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 2.590e-40
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 0
Query:   18 ASAPATAVLPQGG--RKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 114
            ASAP      QG   R   +++LPLELIDKCIGS++W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYEI ADG KR  +LDQILLNGNNVA+LVPGG P
Sbjct:    2 ASAPPRRPRSQGSKPRDTMSQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDP 99          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.920e-40
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0
Query:   36 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 116
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDV EYEI  +G KR++++DQ+LLNGNNV +LVPGG+PE+
Sbjct:    6 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEE 85          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 1.810e-39
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0
Query:   35 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 114
            +RLLPLELIDKCIGSRLWIIMKGDKE +GTLRGFDDYVNMVLDDVTEYEI  +G KR I+LDQ+LLNGNN+ +LVPGG P
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFP 82          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.580e-39
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0
Query:   36 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 117
            R+LPLELIDKCIGSRLWI+M+GDKE VGTLRGFDDYVNMVLDDVTE+E+   G KR+ +LDQ+LLNGNNV ML+PGG PED+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPEDS 85          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.870e-39
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 0
Query:   32 KMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 115
            KM+ + LPL +IDKCIGSRLW+IMKGDKELVGTLRGFDDYVNMVLDDVTEYEI  +G KR  +L+QILLNGNN+A+LVPGG PE
Sbjct:   23 KMSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPE 105          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 1.050e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0
Query:   34 AARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 116
            A RLLPLELIDKCIGS++WIIMKGDKE VGTLRGFDDYVNMVLDDVTE+EI  +G K+ ++L+Q+LLNGNNV +LVPGG P D
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84          
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Match: A0A7S3BG05_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BG05_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 1.120e-38
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 0
Query:   29 GGRKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 114
            G     A++LPLE+IDKCIGSR+W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYEI A+G KR  +LDQILLNGNNVA+LVPGG P
Sbjct:   12 GNAGFMAQVLPLEIIDKCIGSRMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITAEG-KRVTKLDQILLNGNNVALLVPGGDP 96          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI2.440e-5398.82U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA8.180e-4583.13U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC1.230e-4082.50U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A7S4M2I3_9EUKA2.590e-4071.72U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A024UWN5_9STRA6.920e-4080.25U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
K3W4W8_GLOUD1.810e-3982.50U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A024G4D3_9STRA2.580e-3978.05U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
A0A7S2SPY3_9STRA2.870e-3978.57U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]
A0A8K1CS49_PYTOL1.050e-3877.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3BG05_9EUKA1.120e-3875.58U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=H... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 41..110
e-value: 3.0E-23
score: 93.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 42..110
e-value: 4.8E-21
score: 74.2
NoneNo IPR availableGENE3D2.30.30.100coord: 38..115
e-value: 2.4E-27
score: 96.3
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 32..115
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 37..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7965contigE_fasciculatus_S2_contig7965:5340..7087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7965.16119.1mRNA_E_fasciculatus_S2_contig7965.16119.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig7965 5340..7087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig7965.16119.1 ID=prot_E_fasciculatus_S2_contig7965.16119.1|Name=mRNA_E_fasciculatus_S2_contig7965.16119.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
VANNNRTCLPLLCRDQQASAPATAVLPQGGRKMAARLLPLELIDKCIGSR
LWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILL
NGNNVAMLVPGGSPEDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR033871LSm5
IPR001163LSM_dom_euk/arc