mRNA_E_fasciculatus_S2_contig7965.16119.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7965.16119.1
Unique NamemRNA_E_fasciculatus_S2_contig7965.16119.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.440e-53
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:   97 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 351
            MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYE+DADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 85
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 8.180e-45
Identity = 69/83 (83.13%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:   97 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 345
            MA RL+PLELIDKCIGS+LWIIMKGDKELVGTLRGFDDYVNMVL+DVTEYE+DA+G +R ++L+QILLNGNNVA+LVPGGSP+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 1.230e-40
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:  106 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 345
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDVTEYE+  +G KR++ +DQ+LLNGNNV +LVPGGSPE
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPE 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 2.590e-40
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   52 ASAPATAVLPQGG--RKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 342
            ASAP      QG   R   +++LPLELIDKCIGS++W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYEI ADG KR  +LDQILLNGNNVA+LVPGG P
Sbjct:    2 ASAPPRRPRSQGSKPRDTMSQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDP 99
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.920e-40
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:  106 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 348
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDV EYEI  +G KR++++DQ+LLNGNNV +LVPGG+PE+
Sbjct:    6 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEE 85
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 1.810e-39
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:  103 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 342
            +RLLPLELIDKCIGSRLWIIMKGDKE +GTLRGFDDYVNMVLDDVTEYEI  +G KR I+LDQ+LLNGNN+ +LVPGG P
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFP 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.580e-39
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:  106 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 351
            R+LPLELIDKCIGSRLWI+M+GDKE VGTLRGFDDYVNMVLDDVTE+E+   G KR+ +LDQ+LLNGNNV ML+PGG PED+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPEDS 85
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.870e-39
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:   94 KMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPE 345
            KM+ + LPL +IDKCIGSRLW+IMKGDKELVGTLRGFDDYVNMVLDDVTEYEI  +G KR  +L+QILLNGNN+A+LVPGG PE
Sbjct:   23 KMSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPE 105
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 1.050e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:  100 AARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 348
            A RLLPLELIDKCIGS++WIIMKGDKE VGTLRGFDDYVNMVLDDVTE+EI  +G K+ ++L+Q+LLNGNNV +LVPGG P D
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm5 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BG05_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 1.120e-38
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:   85 GGRKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILLNGNNVAMLVPGGSP 342
            G     A++LPLE+IDKCIGSR+W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYEI A+G KR  +LDQILLNGNNVA+LVPGG P
Sbjct:   12 GNAGFMAQVLPLEIIDKCIGSRMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITAEG-KRVTKLDQILLNGNNVALLVPGGDP 96
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7965.16119.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U62.440e-5398.82snRNA-associated Sm-like protein LSm5 n=2 Tax=Ecto... [more]
U68.180e-4583.13snRNA-associated Sm-like protein LSm5 n=1 Tax=Trib... [more]
U61.230e-4082.50snRNA-associated Sm-like protein LSm5 n=4 Tax=Sapr... [more]
U62.590e-4071.72snRNA-associated Sm-like protein LSm5 n=1 Tax=Prym... [more]
U66.920e-4080.25snRNA-associated Sm-like protein LSm5 n=3 Tax=Apha... [more]
U61.810e-3982.50snRNA-associated Sm-like protein LSm5 n=13 Tax=Oom... [more]
U62.580e-3978.05snRNA-associated Sm-like protein LSm5 n=1 Tax=Albu... [more]
U62.870e-3978.57snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhiz... [more]
Uncharacterized1.050e-3877.11protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
U61.120e-3875.58snRNA-associated Sm-like protein LSm5 n=1 Tax=Hapt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7965contigE_fasciculatus_S2_contig7965:5340..7087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score173.3
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D8LJI3
Preferred nameLSM5
Model size356
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033993,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
Exons3
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsCOG1958@1,KOG1775@2759
Ec32 ortholog descriptionSm-like protein LSm5
Ec32 orthologEc-17_002110.1
Cds size354
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.499513-CDS-E_fasciculatus_S2_contig7965:5339..55161696842456.499513-CDS-E_fasciculatus_S2_contig7965:5339..5516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7965 5340..5516 +
1696842456.5108204-CDS-E_fasciculatus_S2_contig7965:6450..65641696842456.5108204-CDS-E_fasciculatus_S2_contig7965:6450..6564Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7965 6451..6564 +
1696842456.5211415-CDS-E_fasciculatus_S2_contig7965:7024..70871696842456.5211415-CDS-E_fasciculatus_S2_contig7965:7024..7087Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7965 7025..7087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7965.16119.1prot_E_fasciculatus_S2_contig7965.16119.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7965 5340..7087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7965.16119.1

>prot_E_fasciculatus_S2_contig7965.16119.1 ID=prot_E_fasciculatus_S2_contig7965.16119.1|Name=mRNA_E_fasciculatus_S2_contig7965.16119.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
VANNNRTCLPLLCRDQQASAPATAVLPQGGRKMAARLLPLELIDKCIGSR
LWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRRIQLDQILL
NGNNVAMLVPGGSPEDT*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7965:5340..7087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7965.16119.1 ID=mRNA_E_fasciculatus_S2_contig7965.16119.1|Name=mRNA_E_fasciculatus_S2_contig7965.16119.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1748bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7965:5340..7087+ (Ectocarpus fasciculatus EfasUO2)
GTTGCCAACAACAACAGGACTTGCTTACCTCTGCTGTGTAGAGACCAACA
GGCTTCCGCGCCTGCTACTGCTGTGTTGCCGCAAGGAGGGAGGAAAATGG
CTGCGAGGTTGCTTCCGTTGGAGCTTATCGACAAGTGCATTGGGTCCAGG
CTGTGGATTATCATGAAGGGAGACAAGGTGTGTTTTGATGAGGCTACAGC
AGTGGTAGCTCCTGTGTCGGCGAGCAACGGCCAGGGGAGGCCATGGGAAA
CCGTCGTGCTGTAGCAGTGGTATGGCTTGGTGGTGAAAGAGGGCACCGGA
CAGCCGCCCGGGGCAGTTGTTTCTTTTCAGCTTTTCTTTCTCTCTTGGCA
ACCCAGCGGACAGGGTGGCGGCAACAACAGCAGCTCTTTTCAGCAGTGGC
CAAGTAAAAACGCGCGTGGTCTTTGAAAGATCGGGTGCGCTCTCGCCTCC
CATACACAAGCCACCTCAGGAGGTCACTCGGTGGCAGGGGTCATATCGTT
AAGGGGGAGAAGCGTGAATCGTAGGGAACCAGGAGATGATTGGGGCTGTG
GTTGGTGTTCCCTTGCTCGTGTTTCTGCCAACCCTTGAGCGTTGCTTACA
AATCCGCCGGTTGCGTGAGATACCACCCCCCCTTGTACCCGAGGCATTCA
AAAGTTCGTTTGACTCTGCAGCAACAACACGCAGTGAGGTTACCGAGAAA
TGGCGGCGTTGAACTGCTGTCTCGTCTAGAGCTTACCGAAGGCGTGCCAT
CGCTTGGCTACCGCGGCACCCTCCCTCGGTCGTGGAGCAATCGAGCTTTG
AAAATCGGTCCAGGGATGTGGGTGGTATCTTACGTACATGTGTCACCTAC
TGCTGTCAAGTGTTATATTGTACGGTTCGGACGAATTTGATCTGAAAACC
CCCCTTTCCGCTGCGCTATGGTAACCCACGTGCCACTTGCCCCGCCTAGA
ATCGTGCCTGTTGATTGCCTCGGTACACGTTTGTCAAGAAAAACGAACTT
TAACTTTCGTCTGTGGCGTCGGTTCTGTGTTATGGCACGAAATCACGCGG
ATAAAAAGGGTTGTTACACAAACACTGATGATCCGATGTTGTTACATGTA
CACTTGCCCAGGAGCTTGTGGGCACCCTGAGAGGGTTCGACGACTACGTG
AACATGGTGCTGGACGACGTCACGGAGTACGAGATTGACGCCGACGGGAC
GAAGCGGAGGATACAGCTCGATCAGGTGCGGCATCGCTTTCTAGATTCCA
GCCAATATTTTTTGGAAGAGAAGAGAAGACAAGACAATCATCAACAGGAG
CAAACAGCAAAACAGCTGCACTTTGATTTTTATTTTATTTTTTGTCCAAC
CCTGCAACCCCGCCGTACAAGCCGCCAATGTTTTTGACAGACCCCGGCGC
GCCCTGCTTCCTCCTTGTTCGACGTAAAAGGGCTGCGTACCATCCCAGAT
ATCGGGCGGCAAACCCGAATGTCGTTTGCGATAGGCCATGGGTGGCAAAG
TAGCGCAGCGAGGTATACTGTAGCACGGCATCTCCTCATTGGGCTCCTTG
CTACAGATGCAGGAAACTACTGATGTCGTGCTTCGTTCGTTATTTTTTCT
TTTTTGACACAGTTTTTTCGTTTTTTCCGTCTGTCGCACGCACCTGCATG
TCTCTCTCCGCGCGCGTATTCCACTCCTGCTCAAGATTTTGCTAAACGGG
AACAACGTGGCGATGCTGGTTCCAGGGGGGAGCCCGGAAGATACATAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7965:5340..7087+

>mRNA_E_fasciculatus_S2_contig7965.16119.1 ID=mRNA_E_fasciculatus_S2_contig7965.16119.1|Name=mRNA_E_fasciculatus_S2_contig7965.16119.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7965:5340..7087+ (Ectocarpus fasciculatus EfasUO2)
GTTGCCAACAACAACAGGACTTGCTTACCTCTGCTGTGTAGAGACCAACA
GGCTTCCGCGCCTGCTACTGCTGTGTTGCCGCAAGGAGGGAGGAAAATGG
CTGCGAGGTTGCTTCCGTTGGAGCTTATCGACAAGTGCATTGGGTCCAGG
CTGTGGATTATCATGAAGGGAGACAAGGAGCTTGTGGGCACCCTGAGAGG
GTTCGACGACTACGTGAACATGGTGCTGGACGACGTCACGGAGTACGAGA
TTGACGCCGACGGGACGAAGCGGAGGATACAGCTCGATCAGATTTTGCTA
AACGGGAACAACGTGGCGATGCTGGTTCCAGGGGGGAGCCCGGAAGATAC
ATAA
back to top