mRNA_E_fasciculatus_S2_contig793.16092.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig793.16092.1
Unique NamemRNA_E_fasciculatus_S2_contig793.16092.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig793.16092.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-12
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = -3 
Query:  519 EDDDPEGSELVNTVRQTVGDAEAAGLDDNLDDD-RTVVAKLKSRGNEGTESEEPGSIHGRSSGFELSREDHKPKNTKP 749
            ED D EGS  ++T RQ V DAEAAGLDDNL +  + V+AKLKS   E TE +E  SIHGRSSG ELSR D KPKN KP
Sbjct:  401 EDKDAEGSAKLSTGRQAVEDAEAAGLDDNLKEYYQVVLAKLKSSRKEATEYKELKSIHGRSSGVELSRADQKPKNAKP 478
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig793.16092.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.260e-1264.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig793contigE_fasciculatus_S2_contig793:22086..22878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size793
Hectar predicted targeting categorysignal peptide
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.6034899-UTR-E_fasciculatus_S2_contig793:22085..224101696842453.6034899-UTR-E_fasciculatus_S2_contig793:22085..22410Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig793 22086..22410 +
1696842453.6258883-UTR-E_fasciculatus_S2_contig793:22842..228781696842453.6258883-UTR-E_fasciculatus_S2_contig793:22842..22878Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig793 22843..22878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.6152463-CDS-E_fasciculatus_S2_contig793:22410..228421696842453.6152463-CDS-E_fasciculatus_S2_contig793:22410..22842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig793 22411..22842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig793.16092.1prot_E_fasciculatus_S2_contig793.16092.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig793 22411..22842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig793.16092.1

>prot_E_fasciculatus_S2_contig793.16092.1 ID=prot_E_fasciculatus_S2_contig793.16092.1|Name=mRNA_E_fasciculatus_S2_contig793.16092.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
MTLGLGCGFISFFPPWTYPSTCTSTCTSTYLSTYPSTYPSTYPSTYPSAY
PSSCPSSCSPSSSYRAWCSWAYGPPLRAQTRSICRESTPVLRTRCPHSRG
SSTWLRLYDRRPGCRRARPLPHPQLSAGRCSPARFPRGRRPPT*
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mRNA from alignment at E_fasciculatus_S2_contig793:22086..22878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig793.16092.1 ID=mRNA_E_fasciculatus_S2_contig793.16092.1|Name=mRNA_E_fasciculatus_S2_contig793.16092.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=793bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig793:22086..22878+ (Ectocarpus fasciculatus EfasUO2)
GTTCTCCCTCAGCCGACATGACATTTTGTTTGGGCTTCGCCATACGAAGG
GCATAGGGGAAATCGCCCCGCAACGCGACAACTGCTGTACACGAAAATAG
CCCGACACAACACATCAATCACTAGAGGACCCGATGTTCAGTGCCAGACA
CGGTGGGGTCGCCAGCACGCGCCCGGCCGCTTGGCAGTTGACGATTCTTG
CCCACAAACGTCAACCCCCATTTCGACCATGAAAAAACCGTCACCTCTCG
TTTGCTGTTCCTGCCACGCAAATACTGCTACTCACACAGTTTCTCACGGC
TGGGTGGAATACACCCGCAAGGGAGATGACCCTTGGCCTCGGATGCGGGT
TTATTTCTTTTTTTCCGCCTTGGACTTATCCTTCGACTTGTACTTCGACT
TGCACTTCGACTTATCTTTCGACTTATCCTTCGACTTATCCTTCGACTTA
TCCTTCGACTTATCCTTCGGCTTATCCTTCCTCGTGTCCTTCTTCTTGCA
GTCCTTCTTCGAGCTACCGGGCTTGGTGTTCTTGGGCTTATGGTCCTCCC
TTGAGAGCTCAAACCCGCTCGATCTGCCGTGAATCGACCCCGGTTCTTCG
GACTCGGTGCCCTCATTCCCGCGGCTCTTCAACTTGGCTACGACTGTACG
ATCGTCGTCCAGGTTGTCGTCGAGCCCGGCCGCTTCCGCATCCCCAACTG
TCTGCCGGACGGTGTTCACCAGCTCGCTTCCCTCGGGGTCGTCGTCCTCC
GACTTGACCTCCCCCGACCTGTCGCTCTTCTCGAGACTTGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig793:22086..22878+

>mRNA_E_fasciculatus_S2_contig793.16092.1 ID=mRNA_E_fasciculatus_S2_contig793.16092.1|Name=mRNA_E_fasciculatus_S2_contig793.16092.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig793:22086..22878+ (Ectocarpus fasciculatus EfasUO2)
ATGACCCTTGGCCTCGGATGCGGGTTTATTTCTTTTTTTCCGCCTTGGAC
TTATCCTTCGACTTGTACTTCGACTTGCACTTCGACTTATCTTTCGACTT
ATCCTTCGACTTATCCTTCGACTTATCCTTCGACTTATCCTTCGGCTTAT
CCTTCCTCGTGTCCTTCTTCTTGCAGTCCTTCTTCGAGCTACCGGGCTTG
GTGTTCTTGGGCTTATGGTCCTCCCTTGAGAGCTCAAACCCGCTCGATCT
GCCGTGAATCGACCCCGGTTCTTCGGACTCGGTGCCCTCATTCCCGCGGC
TCTTCAACTTGGCTACGACTGTACGATCGTCGTCCAGGTTGTCGTCGAGC
CCGGCCGCTTCCGCATCCCCAACTGTCTGCCGGACGGTGTTCACCAGCTC
GCTTCCCTCGGGGTCGTCGTCCTCCGACTTGA
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