mRNA_E_fasciculatus_S2_contig790.16066.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig790.16066.1
Unique NamemRNA_E_fasciculatus_S2_contig790.16066.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Rab5, (RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 1.290e-129
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK-ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 195
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Rab5, (rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA)

HSP 1 Score: 327 bits (837), Expect = 2.920e-108
Identity = 167/192 (86.98%), Postives = 177/192 (92.19%), Query Frame = 2 
Query:  326 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            RVCHFKLVLLGDTAVGKSCLVVRFVR+EFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV  EEA  YAE+NG+IHMETSAKSA NVKSIFVEIA++LPKA  QPEREAFPIM PR ++K+G C
Sbjct:    3 RVCHFKLVLLGDTAVGKSCLVVRFVRNEFFEFQEPTIGAAFLTQTVGLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKD-SFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEIAKRLPKAGAQPEREAFPIMPPRRDKKAGGC 193
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BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 318 bits (815), Expect = 6.460e-105
Identity = 156/196 (79.59%), Postives = 179/196 (91.33%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TNK  SFNGAKSWVKELQRRGDPNVIIALAGNKADL+++R+V+SEEA+ Y+E+NG++HMETSAK+A +VK +F EIA+KLPK   QPER+AFPI+ P+  +   CC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNK-ESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRRVESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVCC 195
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Hypothetical (protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 316 bits (810), Expect = 3.560e-104
Identity = 163/196 (83.16%), Postives = 173/196 (88.27%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L +ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SFNGAKSWVKELQRRGDPNV+IALAGNK DLE RRQV  EEA  YA +NG+IHMETSAKSA NV+ IF++IA+KLPK   Q ERE FPIM P+ E K GCC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQTVSLPEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKD-SFNGAKSWVKELQRRGDPNVVIALAGNKCDLEPRRQVPFEEAAAYAAENGIIHMETSAKSAHNVQQIFLDIAKKLPKNPPQVEREVFPIMPPKRESK-GCC 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA)

HSP 1 Score: 313 bits (801), Expect = 8.770e-103
Identity = 156/197 (79.19%), Postives = 178/197 (90.36%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQ-KSGCC 901
            M++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TNK  SFNGA+SWVKELQ+RGDPNV+IALAGNK+DLEH+R+V++EEA  YA +NG++HMETSAKSA NVKS+FVEIA+KLPK   +  REAFPI+ P+T Q +  CC
Sbjct:    1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNKD-SFNGARSWVKELQKRGDPNVVIALAGNKSDLEHKRKVETEEAEAYALENGILHMETSAKSATNVKSLFVEIARKLPKNPPETPREAFPIIPPKTSQSRRQCC 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Hypothetical (protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV)

HSP 1 Score: 313 bits (803), Expect = 1.750e-102
Identity = 157/194 (80.93%), Postives = 175/194 (90.21%), Query Frame = 2 
Query:  320 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LD+ATVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN   SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YAE+NG++H+ETSAK+A NVK++FVEIA+KLPK   QPEREAFPI+ P+ E +S CC
Sbjct:   45 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPD-SFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEIAKKLPKTPPQPEREAFPIVTPKQENRS-CC 236
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2XTP3_9STRA)

HSP 1 Score: 311 bits (798), Expect = 2.860e-102
Identity = 156/194 (80.41%), Postives = 176/194 (90.72%), Query Frame = 2 
Query:  320 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            + R+ HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TN   SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YA +NGL+H+ETSAK+A NVKS+FVEIA+KLPK   +PEREAFPI+ P+T++KS CC
Sbjct:    9 NSRIHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPD-SFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYATENGLLHLETSAKNANNVKSLFVEIAKKLPKQEPEPEREAFPIL-PQTQEKSNCC 200
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Canine-like (rab-type small G protein n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BUG2_THAPS)

HSP 1 Score: 310 bits (795), Expect = 6.380e-102
Identity = 156/194 (80.41%), Postives = 174/194 (89.69%), Query Frame = 2 
Query:  320 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TN   SF GAKSWVKELQRRGD +V+IA+AGNKADLE RRQV  EEA  YAE+NG++HMETSAK+A NVK++FVEIA++LPK+T QP+REAFPIM P+ ++   CC
Sbjct:    2 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPD-SFAGAKSWVKELQRRGDQDVVIAMAGNKADLEARRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLPKSTQQPDREAFPIM-PQKQESRNCC 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Ras-related (small GTPase Rab5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUF1_9STRA)

HSP 1 Score: 309 bits (792), Expect = 1.880e-101
Identity = 154/196 (78.57%), Postives = 177/196 (90.31%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            MSS RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN   SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA+ YAE+NG++H+ETSAK+A NVK++FVE+A+KLPK   QPEREAFP+  P+ + ++ CC
Sbjct:    1 MSSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNPD-SFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVELAKKLPKNAPQPEREAFPLAAPQNDNRN-CC 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Match: Ras-like (protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q598_SAPDV)

HSP 1 Score: 307 bits (786), Expect = 1.630e-100
Identity = 159/197 (80.71%), Postives = 171/197 (86.80%), Query Frame = 2 
Query:  314 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 901
            M+S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK  SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V  EEAR YAE+N ++HMETSAK+A NVK +FV IAQKLPK   QPER+AFPI      +K+GCC
Sbjct:    1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKD-SFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQKLPKNPQQPERDAFPITPVTPPKKNGCC 196
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig790.16066.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rab5,1.290e-12998.98RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
Rab5,2.920e-10886.98rab family GTPase n=1 Tax=Tribonema minus TaxID=30... [more]
Uncharacterized6.460e-10579.59protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical3.560e-10483.16protein n=2 Tax=Chattonellaceae TaxID=658124 RepID... [more]
Hypothetical8.770e-10379.19protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.750e-10280.93protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0... [more]
Hypothetical2.860e-10280.41protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Canine-like6.380e-10280.41rab-type small G protein n=2 Tax=Thalassiosira Tax... [more]
Ras-related1.880e-10178.57small GTPase Rab5 n=1 Tax=Fragilariopsis cylindrus... [more]
Ras-like1.630e-10080.71protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig790contigE_fasciculatus_S2_contig790:11412..17039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score386.3
Seed ortholog evalue8.3e-105
Seed eggNOG ortholog2880.D7FJC7
Preferred nameVPS21
Model size1322
KEGG koko:K07889,ko:K17785
KEGG Pathwayko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827
Exons6
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
Ec32 ortholog descriptionRab5, RAB family GTPase
Ec32 orthologEc-14_005840.1
Cds size591
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig790.16066.1prot_E_fasciculatus_S2_contig790.16066.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig790 12583..16621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.3321502-UTR-E_fasciculatus_S2_contig790:11411..114821696842451.3321502-UTR-E_fasciculatus_S2_contig790:11411..11482Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig790 11412..11482 +
1696842451.3499851-UTR-E_fasciculatus_S2_contig790:12340..125821696842451.3499851-UTR-E_fasciculatus_S2_contig790:12340..12582Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig790 12341..12582 +
1696842451.431756-UTR-E_fasciculatus_S2_contig790:16621..170391696842451.431756-UTR-E_fasciculatus_S2_contig790:16621..17039Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig790 16622..17039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.364993-CDS-E_fasciculatus_S2_contig790:12582..127091696842451.364993-CDS-E_fasciculatus_S2_contig790:12582..12709Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig790 12583..12709 +
1696842451.3806202-CDS-E_fasciculatus_S2_contig790:14429..145871696842451.3806202-CDS-E_fasciculatus_S2_contig790:14429..14587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig790 14430..14587 +
1696842451.3966677-CDS-E_fasciculatus_S2_contig790:15583..156871696842451.3966677-CDS-E_fasciculatus_S2_contig790:15583..15687Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig790 15584..15687 +
1696842451.4110222-CDS-E_fasciculatus_S2_contig790:16128..162381696842451.4110222-CDS-E_fasciculatus_S2_contig790:16128..16238Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig790 16129..16238 +
1696842451.421761-CDS-E_fasciculatus_S2_contig790:16529..166211696842451.421761-CDS-E_fasciculatus_S2_contig790:16529..16621Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig790 16530..16621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig790.16066.1

>prot_E_fasciculatus_S2_contig790.16066.1 ID=prot_E_fasciculatus_S2_contig790.16066.1|Name=mRNA_E_fasciculatus_S2_contig790.16066.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=197bp
MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKV
QLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKARSFNGA
KSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHME
TSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC*
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mRNA from alignment at E_fasciculatus_S2_contig790:11412..17039+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig790.16066.1 ID=mRNA_E_fasciculatus_S2_contig790.16066.1|Name=mRNA_E_fasciculatus_S2_contig790.16066.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5628bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig790:11412..17039+ (Ectocarpus fasciculatus EfasUO2)
GGTTGGGACGCGGTTGTTTGCCCTCTTCGCCGACTAGCTGTCCTGCATTG
AAAGCGAGTGTGGCACAACAGGTGGGTTTGGGTTCTAAGCAGGTAGAGTC
GTGCGTCGGTAACTTTGTACGTGCCGTGTTGGATCGTACCGTTGGAAACC
ACAGCAGCAGCGAGTCGGCGACATCAGCAGCAGCGCAGCGGAGGAGAGAG
CAGGAACGAGCGCGGTGGCCGCCTTCCGTTTGCGCTAGAGAGAACTTGCC
AGGTTCCCACACTCCCTCGTAGGTGACACCGATGAGCTCTGGCGTGCTTC
TGCCGGTAGCTGCCTTATTTGCAAGACAAGTTCAACGCGCTGCCCAGCCG
CTGAGATGAGTTTCCCCGTCATCAAGCACCGAGCGAGCGACCAGCAAGCA
GTCTGTCGTGCACGTTTCGTTTGATGCCGTTCCCACCGGGTGACCATGAT
GCTCAAACGCGCCCGTTACACCCCGGGAGCGCGGGTAGTTCTTGCTCGGC
TCCTTGCAGGTGTTCTTGTGAGGCCGTCTGAGCGATCCACGTTCTGTCGA
ACTCTGTCCCCGCTGCTGCTTTTCTAAATCCCTCCGCTGGGGAGGAAGCC
CATGTTGATTTATTTGTGTTGTTTCGAAGGTCAACCTCAAGCCCTCTTTT
CTGTCAACGAACGATGCCACGTAACTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGTTGACTAGGACAAAGCACAGCAGCAGGAGTA
GCTCTTCCCTGGCTCGGATGGCGCGGCAGAGCTTACTCTCACGCGACATA
TTATCATCAAACACGTATAGGATGGTGTGCATGTTATTGTACAGCTGGCA
TGTACGACGACGGTTGTTGGGCGTGTGTGTGTGTGTCTTTGACGTCTTGA
CCCGGAACAATGCCCGAACCCACCTGCAGCGCGCAAAACGAGAGAAACGC
TGCCGAGCAAGGAACAGCAGGCGGCCGCTTATTCCGACTGCAAGCCGGAA
CTTAAAAAGGAGGGAGCCAACACCCAGGCGGCGTGTTGCTGTCGGTCCTA
CATACAGCTGGACGGCAGCTTTACCTCCTGCCAAACGTGCCGCAGAGCGG
AATAATAAGTTCCGTGCCAACAGGAACAACAGAGGGCTGCCGCCTCCCGC
TATCCGTAGCCAGCAGGCGACATGAGTTCGGGGAGAGTATGCCACTTCAA
GCTGGTGCTGCTCGGGGACACGGCGGTGGGGAAGTCATGTCTCGTTGTGC
GTTTTGTGAGGGACGAATTCTTCGAGTATCAAGAACCCACGATCGGAGGT
ACGTAAGGGCGAGCGAAGAGGGAGGTGTCGTGTTTTTCTGCAGAACAAGT
CACAAACGCGGCTGCTCCCCTAGAAGACTGCTGTTCAGTAGAGAACGGTA
CCACCCGAAGGTGTGATGGAAGGAGGTTCGGGACATGAACAGGGTCTTCT
CTACAATAACGCCTCTTCTCTTTGAAACACGGGGGAACAGATCACTTGAA
ACCAGTGTCGGGGAGGTTCCACCGGCAGACGAGCGTTTTTCATGAACCAG
AGGAGCTCTGCGAAAAGTAAAAAAAAAGGGATATTGTTGAGAGGCCTGTG
TATTTGGGCTCATCTGCGGCGCCTAGAACTCGGCCTGTCGAACTCAACCA
CAAGATTTGCGGACGGCAGAATTTTAACAGATTAGGCAAGTTACGTCGGG
CACGACCGTAGCTTTCACACCGCTCCCTGCTAAGGGTCGAACTGGAGAAG
TTGTCATTGGCCATGGGCGTCTTTCTGTCACACCCGGACTGTTTGTGTTT
CTTTCAACAGATGAAAGGGTTTGCAACTATAAATACTGCTGCGTGGCTCC
ATTTTTTTTTCGTGTGGTGGAGCTCTGCACACCTCTACCGCGGCCATAAA
TAACAGAGTCAAATAGTATTGAGGAAGCAACCGCACCCGTCCGATATTGT
ATGCATATAGCGAGAGGTCCTCGTACCGTACACGCTTTTCTGCAGGTTGC
CAGACCGCAACTACTGCTATTTTTGTGTATTAATGGGGAAGTGGAAGAAC
TTGTTCATAGAGTGGTTGTGTCAGGTCACTTGGGCCTATTTTAGGCGCTG
CTAGTTGGCATTGGCCATCACCCGTCTTGCGACGTGTCGTACTAAACGGA
ATACCCCGTGGCATACCGTACAGTTGATGGGCATGGACATGTAGTACATT
TCCCCTGATGTTTATGAAAAGAAACACTGATGCCGACAAGTATGTTCGAC
TACAATCTGGGTTCGTATTTTAAGAGTACTTTGAGCGGGAGCATATGAAT
ACACAGATCAAGCACAATTTGTTGCCAGCGGCACCCCCCTTGAATCCACC
CGAAGAAAAATGTAGTCACCGACGTATTAGACCTATCGCTTTAAAAGATT
CACCCACCCGGAGGGGTTGAGGAGGTATCGTTAGGAGCGACAAGCTAGTG
GTAATGACTTTTATTTTGTATCCCCCATTTTCGAAAGGCCCGGCCACAAC
CCTACCGTTCCCACTGACGCGTGCGTGCACGTGTAAACTTCGTTGGGATA
ACTATTGGAACATGCCCATTATTGTGGACCTGGTTCTTGGTTCTATTTTT
CCCGTCGTACCGTGTGCTCCAAGCATTGGCCGCAAAGAATGGCGTTCTCG
TACAGATGGCAGTTGGGTTGGCGAGTGCTGTATGCTCATCGGTCTTCTTT
TCAAGTTGGTGGTGTCTACTTCGTGCTGCTGACCTGCTGCTGCAGCTGCC
AGCTGCCCCGCTGTGGTGCGAACATCTGGACCATGGATCCTTTGACGCCA
CGTCTAGCAGGCCATGCTTGCTCACCTCTCGGGTACGGGAGGACTGGCAA
CATGCATACAACGAGGTTTTGTGATCGACATCTCTACCATGCGGTGCTGC
TCGCGCTGACCCTGTCGCTACAGGTGGCGAAGGAATTGACACCGTGAAAC
AGCCACTTACCGCCATCTGTCACCGCGTGTTTGTTGTTGCACGCTGTCGA
CGTTGTTCTTGTGGGCAGCCGCGTTCCTGACACAAAAGGTGCAGCTCGAT
GACGCGACTGTAAAATTCGAGATTTGGGATACCGCCGGGCAGGAGCGATA
CCGCAGCCTCGCACCCATGTACTACCGGGGGGCGGCGGCGGCAATCGTGG
TGTACGACGTTACGAACAAGGCAAGAGTTTTGGAACTGAACAGATCGACT
AACTACTGTCAAGCTCTGTGGTGTAGAGTTTTTAGAACAGAAGAAATCGA
GTAACTGTCAATGGTCTTGTGGTGCACAACGTTACAAACGAGGCAAGAGT
TAAAGAACAGAACAGATCGACTGACCCGTCAATGGTCTGTGGTGTGGAGT
ATTACAACTATAAAGCAGATCGACTGCTGTCAATGGTCTGTGATGTACGA
TGTCACGAACAAGGCAAGAGTGTTAGGATAGAAGATATCGACTGCCAATG
ATATGGAAGTTATGGCAAAAGTTTTAAAACTGAAGAAATCGACTGCTGTC
AATGGTCTGTGGACGAACAAGGCAAGAGCTTTAGAATAGAGCAAATCGAC
TGCTGCCAATGGTTAGTGCGTTCAGCACACGCTTCTCTTGTCTTTTTTCG
CTGTTGTATTTCCCGGAACAACCTCCCTGAAGTATGACAGATATGCGCCT
GTACCGTTACAGATGGCACCTGTAACGTTTCAGATGGTGGTGCGTTTGGT
ATGGAGGGGTACACAAGTATCTTCTTCTTTCCTCGTTTTTGGTGAACACT
GTACACGGAAGTACAGACGGTGGGGAAGGAAGGAGTGTCAATCAGCTGAG
CTTGTTGGTTTTGGATCCGTCTGTTGCTCTTGGGGGAGAGGGGGGAGGGG
CGTGTCAGGAGAAGGGGGTGCTTGTTTTTGGGGAGGCATGCACACCCGCG
CTGCATAGGTGAGGGAGGATGGTTGTTGCTTGAAGCTTGTTAGACTCGTG
CTGCACGGTGCACGTTTATCAGTGCCTTGCTATAGCGTTTTTGCATTACC
GTTGGCCTGGAACGTGGCAAGGCATGGGACGCGTAGCTTTTAGAGGAGGC
CCAAAGGAATTTTGATAAGTATTTTCTCCCTACCCGTTGTCGTCCACTGT
TGTGTGACCCCCGTCTTTGGTTGTTGCTGTCTCTTTGAATTTTTGCCAAC
ACTGCTCTCATGCTCTCAGGAGTCTTTCAACGGTGCTAAGTCGTGGGTGA
AGGAGCTGCAGCGTAGAGGAGACCCGAACGTGATTATCGCGCTCGCGGGA
AACAAGGCTGACCTCGAGCATCGCAGGTATGGAAATGGAGTATCAACTGC
TATCTGCTGTCGTTATATACAGATTGGTGAACACCCGTCACTATAGATGA
GATTCTCGACTCATCATAGACCGCGCTAACCGGCTGACCCAATGAGAAGA
AGTCAGTCTTAGTGCAGCTGAAAACGGAAAAGTGCAGTGTGTGTTTTTGT
TTTATTTATTTTTATTATTAGCATCGACCGCGCTGATCGGCCGACCAATG
GAAAGACGTTGGTCTCAGTGCGGGTGAACACGGAAAGCGCTGTGTGTCTT
TATCATCAGCATCGACCGCGTTAACCGGCCGACCAATGAACAGACGTCAC
GCGTGGTCGATGGTGTAACCGCTAAGGCATGCAAAACTTAGGAGTACGCC
CCGACCCCCCGCCCCGTCCCGTCCCGTCTCGTCCCCGTCCCCTCTTGTTG
GGTGTCTGTCCTCCCAGGCAAGTACAGTCGGAAGAGGCTCGCCTGTACGC
GGAGGACAACGGTCTGATTCACATGGAAACCTCGGCCAAGAGCGCGCAAA
ACGTCAAGAGCATTTTCGTCGAGATCGGTAAGTTTTTCGTTGCTGCACGC
GAGAGGTATGCTATAACTTACTTGCCTTGTCTGCAACACTGCGCTTGCTT
TCGGTGGGTTGTCGATCACGCGATGGTAGAGAGCGGTGTTGTTACGGTAG
ACGATGACAACGCCGGCGTGGCCCAACCTCCCGAACGACTTCTGCGGTCC
GCGTCTTTGGGGCTCACCTGAGCATCCAACAACCCGACCCCCGCCTCCCA
CCCGATTGCGCACGCTCACACACCGCACGCCGCCCCCTTTTCAACCGCCT
CCACATGTCGCCCCACAGCCCAAAAGCTGCCGAAGGCCACGGTGCAGCCA
GAGAGGGAAGCGTTCCCCATCATGCGGCCGAGGACGGAGCAAAAATCTGG
ATGCTGCTGAGACCAACGGTACCCCCGTTCTCGTCACCCCAGCTCGTCCC
TCTCTTTATGCAGGAGCTCTACACAGCAGTGTTCGTTATTGAAGAAGTTT
GATGCCCTTCTCCGGCCGGTCGACATGCACTCACACCGGTGTAACATGGC
TCGTGGCTGCAGCAGCTGTTGGAAGGTTGCTGCAGATGGCTGTTAGAGTG
TGGGGTGCACACAGCTTGGGGTGGATATCATTCTGGTTCGTCTGCGAACA
GGCGGAAATATTTGACCGGCGTCAAGCTTCGGCAGATAGCTGTGACAAGA
CAAGACATGCCGCCGCTATAATAGCTTTGTAGAGACGTGGGGGTGCATTG
CGCGTGTGATGGTAAAATAGCGCTTGTTTATACGGGTTGAGGGCGTGGTT
GGGCGTGTTCCGAAGCGGGATATGGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig790:11412..17039+

>mRNA_E_fasciculatus_S2_contig790.16066.1 ID=mRNA_E_fasciculatus_S2_contig790.16066.1|Name=mRNA_E_fasciculatus_S2_contig790.16066.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig790:11412..17039+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTTCGGGGAGAGTATGCCACTTCAAGCTGGTGCTGCTCGGGGACAC
GGCGGTGGGGAAGTCATGTCTCGTTGTGCGTTTTGTGAGGGACGAATTCT
TCGAGTATCAAGAACCCACGATCGGAGCCGCGTTCCTGACACAAAAGGTG
CAGCTCGATGACGCGACTGTAAAATTCGAGATTTGGGATACCGCCGGGCA
GGAGCGATACCGCAGCCTCGCACCCATGTACTACCGGGGGGCGGCGGCGG
CAATCGTGGTGTACGACGTTACGAACAAGGCAAGATCTTTCAACGGTGCT
AAGTCGTGGGTGAAGGAGCTGCAGCGTAGAGGAGACCCGAACGTGATTAT
CGCGCTCGCGGGAAACAAGGCTGACCTCGAGCATCGCAGGCAAGTACAGT
CGGAAGAGGCTCGCCTGTACGCGGAGGACAACGGTCTGATTCACATGGAA
ACCTCGGCCAAGAGCGCGCAAAACGTCAAGAGCATTTTCGTCGAGATCGC
CCAAAAGCTGCCGAAGGCCACGGTGCAGCCAGAGAGGGAAGCGTTCCCCA
TCATGCGGCCGAGGACGGAGCAAAAATCTGGATGCTGCTGA
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