mRNA_E_fasciculatus_S2_contig79.16063.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig79.16063.1
Unique NamemRNA_E_fasciculatus_S2_contig79.16063.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig79.16063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ2_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 5.560e-75
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:    1 MGIAWFYEGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 357
            MGIAW Y GHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA
Sbjct:    1 MGIAWLYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig79.16063.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.560e-7598.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig79contigE_fasciculatus_S2_contig79:41502..45037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size978
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionmonocarboxylate permease, putative
Ec32 orthologEc-03_003510.1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.0683331-CDS-E_fasciculatus_S2_contig79:41501..416151696842451.0683331-CDS-E_fasciculatus_S2_contig79:41501..41615Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 41502..41615 +
1696842451.081894-CDS-E_fasciculatus_S2_contig79:42792..428671696842451.081894-CDS-E_fasciculatus_S2_contig79:42792..42867Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 42793..42867 +
1696842451.0964367-CDS-E_fasciculatus_S2_contig79:44004..441321696842451.0964367-CDS-E_fasciculatus_S2_contig79:44004..44132Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 44005..44132 +
1696842451.1080594-CDS-E_fasciculatus_S2_contig79:44376..444191696842451.1080594-CDS-E_fasciculatus_S2_contig79:44376..44419Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 44377..44419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.11931-UTR-E_fasciculatus_S2_contig79:44419..450371696842451.11931-UTR-E_fasciculatus_S2_contig79:44419..45037Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig79 44420..45037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig79.16063.1prot_E_fasciculatus_S2_contig79.16063.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig79 41502..44419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig79.16063.1

>prot_E_fasciculatus_S2_contig79.16063.1 ID=prot_E_fasciculatus_S2_contig79.16063.1|Name=mRNA_E_fasciculatus_S2_contig79.16063.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=120bp
MGIAWFYEGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGI
LGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDA
IKVALRYLKGEFTNVSVKA*
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mRNA from alignment at E_fasciculatus_S2_contig79:41502..45037+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig79.16063.1 ID=mRNA_E_fasciculatus_S2_contig79.16063.1|Name=mRNA_E_fasciculatus_S2_contig79.16063.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3536bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:41502..45037+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAATAGCTTGGTTTTACGAAGGCCACCCAGCGCTTGTGAAGAACGG
CTATGCTGAAAAATTCGAGGAGCTTTCGCGCCAATACCCACCGTCTTCCT
CGGATGTGTCCAAGGTAGGAGGTTCCTTGCGGTTCAGCGCCGGCGAGCGC
ACACTGATCATTCATGTGGCCACGATCGTGATGGACGGGACGCCGCCCGC
AGCTTTTGAAAACGAAGCGCTCTCATGGCAGGGATCCATGCCCAGCTCAA
TCTCTGTATGTACATACAGCAGCAGTTGAATAGTCGTCTGTGCGATTTGC
TCGCAACACAGCTTTAAGGCTTCCAGCAGTTGAAACACCACCAGAACGCA
TACACATTTATTGAAGAAACGGCTTCTTGACACAGCAAGATGAACAACAA
CTACATTAATATATCTGCTGTAGGGTGTCGGTATCTCCTGTGCTCTCACT
CTGCACCACGGCCACCTCGTGGGCAGGCCCCAACACACACACGCGTTTGG
TTATGCGTGATATCATTGACACGAGTTTGTATTTGTTCAATTCGAAAAAC
ACTTCATAAACTTCGCGGCCATGGGAAGGGCCTAGAACGGGTACCCTGTA
CAAGTAGCTATTCTATTTGTTAAATGCTTGTTTCCGGACAGATACCGAAG
GTAATTTCATGACGTTGCTGTCACCGTCCATACATACATGCATCGGTTAT
TTTTGCAGGATAGACGATGACTCGTGGGTTAAAGACTATTTATTCAGACT
AGCTTCTCGAGAAAGACAGGTTCAGTGCTGCTGTTCGCATGATATCCCAC
AAGTCTAGACAGGCTCAGTGCTGCTGTAGTTCGCATTGTATCTCCACAAG
TCTACCTTGTTCGTTCCTGTATTCATCGTCCCGTCTATTCTGGGCTCTAT
TTTACACCTTGGGTGGTGGATGTTTGACGCGCCAGCCGGGGTAACAAAGG
AGGAACGTAAAACACTGGACGTGCTGTCTTTCCTTTTTTTTTCTGAATGG
CACCTCATTGCGTTGTTTGCATTCATTTTTGAATGCGGGATGGGTTCAGG
AGTTGTTCCTTCCCTCCCTTTTTGTTGACTCACGACTGTCCGCTGTCCAC
CTGAGATTGCGAATGTTTAATTCCAGAGGGATTCGAGCTCGCTCGCAATC
TAGGCTAGGAGAAGGTTGCGAAGTTCCCAACTGAATCAAAGGGCCTACCG
TTAGATGGTAGCCTCTGGACTGTCTTGTACCAAAACGTCCCAAGCCATTG
ACCCCTCTCCAACGCCCTTCAACTACGTAAATTGCCACCAGTGGACCGGA
TCCGAACTTATGAAAATGATCGGCATCTTGGGTCTATCAGGATTGGAACC
AGCGTTGAGGGAACAGGTGAGATTCTTTTGCCTTCAGCCTTGAGTATTTC
GCGGCCGCCTGGTCACGGGTTGCTTGTTCTCATCACCTCCTGGACGGCGT
TATGCCTATTTTCTAGCGTGCGGAGTATAAAGCTGCTGATGTTTGTCTAG
AAAGGGGTGTAAACCGGTCGCCGTACCCCCTCCCGGTCAGCACCCACGAA
GGGTTCCAGGACGAAAAAGGAAACAAAGCACAGAATATCATGCTAGGGAT
ATATTCTGATTCCCCGTCTCGGATATAAAACACATTGATTGCCCACTCAC
ACCCAATGGTGCTTCAGCCAACTAATGATTCGTGATACGTATAAACACAA
TGGATCTGTAGCTTGCTTTGTGCCAAGGACCGACGACGTGGAACCCGTCT
GACGTCTAACACGTGTCGGATGCTAAACTACATGTAGTATCCATCATAGC
TTCTTAACGCTCAAGGTCGGGAAATCGAATCCCAACGAGATGTGAAGGTT
TATTTCGTACCACGTGAGCAGATACATGTGGACGAACAAACTACTGAAGA
TACTCTCCGCGAAGGAGTTTTCGTGGGTGCACACGGGGCGGTGCTCTTCA
ATTGAGAGATACAGGACGGCAACTAATTGTGAATGGGATAGCTAAGAAAA
AAGAAACAGTTCGGGTGCCCGCCCCGATGGTATCTTGGGCCAAGGGTCCA
AATATCATGACATGATGAGCGGCGTAAGAGACAGGTTTCGTTCGCTGTTG
TTTTGTTTCATGCCAAGATACCGTATTTTGCTTTGAGCTGACAGAGCGTG
CTCCAGATCAAAGTTGGACGAAGCTCAAGGCCCAATGATTTAGCGGGGGC
AGCTCAATCAACGCGGCTCCAAACCGCTGACAACGGCCACCCTCCCCCAC
CCCCCCGTACAACACCCCCATACGCTCGCCACCCCCTTACTACTACCCAC
TCACGGCACTGGTGAGAAACGACTGTAAGGCTGGCTGACGTTATACTATT
GGCGTCATACGATCTGTACGGAGAAACAAGACGTATCACTCCCGTTTCCC
CTATCAAAATGTTAATTAGTCTCCCCATCCTGTCCCCATCGAAACGCGAT
TGTCACCACTTTGTCCGCCGGCGACCGTGCAAATAACCCCTGCCTGGTGC
TAGGAATTTTTACCGGAAAACCCCGAAGAGGAAAGCCCGTTCGGCAGCCT
CGATGCCAGCGAACTGGAGGAAGTCTTCGAAGATAGCGGCGTTCCGCGTA
TTGAGATCGACGCTATCAAGGTAGCCCTCAGGTAAGGGACTATCGCGAGG
GACCTGGGTTTGCAGAAGAGAGCTTGTGTGGTAGTATGCGCAACTTTCTA
CACGTACGACCAACAACCAGCCAACGGCGTAATTTCTGCGTTTCTCTCGA
GCTTGTTGGCCTACTGTGCAGTACCGAAGCATCGGCATCATGTGAGCGGT
GTGATTTTACTGTGCGCTACTGGGCGTTCGCTCTCACTTGAAAAGTGGTC
CGATGTTGCTTTCTTCCGGCCTCAGGTATCTCAAGGGTGAATTCACCAAC
GTGTCTGTCAAAGCTTGAGGACGGAGCTTGTCTTACAGCCCGACGAGGAT
GGAGAAATCGCCGAAACGAGCTTGGGAAAAGCGGAATTGTTGGATACGTA
CTAACGTACAGGCCCGGAGATAGGAAACGTCAATATCGGGTCGAGACTCG
TTCTCTTTTCACCGCCACTCTGTCGAGCACAGGATGTTATTATAAAGTGA
AGTGTAGGGTCAACCGCTTTCTTAGTGAGGTGGAAAGACTGCAGTTGCAG
TTGGGGGGCCGGTTTAGCGACCCCCTGTTTAGCGACATATGCCCTGTTTA
GCAACCACACAACGACTTCGCACCGTCGTACCCCGGTAGTACAACTGCTA
TATAATTGGTAGTTCGGTTTATTTAGCGACCTGCCCTGAATAGCGAGCAC
ATTGTCGATAAACCGGGCCCCCCACTGCTGTAGCCCTATTTTCATGTTTT
TCGTCAAAGTTCCAGCCTGTTTCTTGAAGATTTCTCTTTTTGAACTGCGG
GCCCCTTCTGTACAAGCAAGTGTTGCTGTTGCCTTCCCATCACGACGAAA
ATGCGAGAGAATAATATGCCTTTGGCGGTGAAGGTTGTGAAAACGTCCAA
TAAGACGAACCGTGGCGACATGTATTGTGATTCGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig79:41502..45037+

>mRNA_E_fasciculatus_S2_contig79.16063.1 ID=mRNA_E_fasciculatus_S2_contig79.16063.1|Name=mRNA_E_fasciculatus_S2_contig79.16063.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:41502..45037+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAATAGCTTGGTTTTACGAAGGCCACCCAGCGCTTGTGAAGAACGG
CTATGCTGAAAAATTCGAGGAGCTTTCGCGCCAATACCCACCGTCTTCCT
CGGATGTGTCCAAGTGGACCGGATCCGAACTTATGAAAATGATCGGCATC
TTGGGTCTATCAGGATTGGAACCAGCGTTGAGGGAACAGGAATTTTTACC
GGAAAACCCCGAAGAGGAAAGCCCGTTCGGCAGCCTCGATGCCAGCGAAC
TGGAGGAAGTCTTCGAAGATAGCGGCGTTCCGCGTATTGAGATCGACGCT
ATCAAGGTAGCCCTCAGGTATCTCAAGGGTGAATTCACCAACGTGTCTGT
CAAAGCTTGA
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