mRNA_E_fasciculatus_S2_contig7883.16043.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7883.16043.1
Unique NamemRNA_E_fasciculatus_S2_contig7883.16043.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7883.16043.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7883contigE_fasciculatus_S2_contig7883:391..1831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size424
Hectar predicted targeting categorymitochondrion
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.7921915-UTR-E_fasciculatus_S2_contig7883:390..4331696842448.7921915-UTR-E_fasciculatus_S2_contig7883:390..433Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7883 391..433 -
1696842448.8234637-UTR-E_fasciculatus_S2_contig7883:1723..18311696842448.8234637-UTR-E_fasciculatus_S2_contig7883:1723..1831Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7883 1724..1831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.8030944-CDS-E_fasciculatus_S2_contig7883:433..6761696842448.8030944-CDS-E_fasciculatus_S2_contig7883:433..676Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 434..676 -
1696842448.8119245-CDS-E_fasciculatus_S2_contig7883:1693..17231696842448.8119245-CDS-E_fasciculatus_S2_contig7883:1693..1723Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 1694..1723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7883.16043.1prot_E_fasciculatus_S2_contig7883.16043.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7883 434..1723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7883.16043.1

>prot_E_fasciculatus_S2_contig7883.16043.1 ID=prot_E_fasciculatus_S2_contig7883.16043.1|Name=mRNA_E_fasciculatus_S2_contig7883.16043.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp
MGLTAIPRVELMSSLPRRRGVRRVRRCFRQATLAPAQSSAATPFGGLGKP
LSPAAEPFAPVVASPPGGAMLLAPLAREPLAGLPAAERER*
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mRNA from alignment at E_fasciculatus_S2_contig7883:391..1831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7883.16043.1 ID=mRNA_E_fasciculatus_S2_contig7883.16043.1|Name=mRNA_E_fasciculatus_S2_contig7883.16043.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1441bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7883:391..1831- (Ectocarpus fasciculatus EfasUO2)
GACTATTCTCGAGAGTCGAACAGCTGATTTGCATTCGTTCGCGACGCAGA
CTGCCGAAAAGGTCGAAAAAGACAAGATTTTGCAAAGGAAGATTTACTCC
CCATAAAGATGGGTCTCACCGCCATCCCGCGGGTGGAGGTGAGCGAGGAC
GTAGTGTTGATTGTACCTACCCAGTTTTAATATGACCAATGCAACGAAGT
GTTCGCTTGGTGTAGTCTACACCTGATTCCGCCTGCGTTCTCTGACCCAA
CAACCCTGGTACCATTGCGTACAACATGTCACTTGTGTTACAGTTTACCT
TGCCGCCTGCGTTCGCCGGCCCACAAATAGTTCCTCGTTTTGATTGGTCA
GAAAACAACACGGATCCGTAGTATATCGAGTTCAAATATAGTTGACGTTC
TCGCGGTGAGATTCATCCTTCGCGTACATTCGTACACCCTTGACGTTGCA
TTCACTACACGTACTACCGTGTTGTACTACCGTGGTTATGTAGGATACCA
CACCCCCTTGGATCGATTTTACGGAACTTGTCGAATAGTGGTGGTACACG
TTTCATTTTTTTGCAAGTTTTGTTGTACCGCTGTTCCGTGGTGTTTTCCA
AGTTAATCGTGGGTAGGTTTCAAGCTCTTACGTTTCACGTGGAAATCGAA
TCCTCAACTTATTATCTAAATAGCCATGTCTCCAAAACTATCACCACCAG
TTTACGACCACGATCCGTGTCAGCCAATGGCTTCGTCATATATACAGCAG
TAGTGTACCAGATATTTCCCTACTGCTTGCCCTCGCCTGCGTCTGCCAGT
CGGTTATTCCCGCTCGCTGCAAAGACGTCAACACTGCCAGTCGCACTTGC
TGCTTGCTGCAAAGACTTCAACGCGTCCCCTTTGACTGCGTTTTTACATA
TCTCGAACCGTGTGTTTGTACCAAGCATTTGTTTTATCCTAATCTGCCGA
TCCCGGCACCAATAAACAACGTAGGGTGAAACATCGCCCCCCCCCCGCGC
TCACTAGTCGATACTGCAGGAGTAGTAGTAGGCAAATATGGCGCACTCCC
CTCAGCTTGATACTGCTGTTACCGCTGCTTGCTGCAATCCTTCGTTGATA
CTTTTGTCGATTTCCTGTACCATGTTTGCGTGACCTGCTTGTTACAATGG
TTTAGCTGATGAGCTCACTGCCACGGCGGAGAGGAGTACGACGAGTTCGT
CGATGCTTCCGGCAGGCGACCCTCGCCCCAGCACAAAGCTCGGCGGCTAC
ACCTTTTGGAGGGCTGGGAAAACCGCTCTCGCCTGCGGCTGAACCATTTG
CACCGGTCGTAGCGTCACCACCGGGAGGAGCTATGCTACTAGCACCCCTG
GCACGTGAGCCCTTGGCAGGGCTTCCCGCTGCGGAGCGTGAGCGATAGAT
CGTGGGGAGGGGGTGCCGGAGGGGGAGGTACAGACCGCTTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7883:391..1831-

>mRNA_E_fasciculatus_S2_contig7883.16043.1 ID=mRNA_E_fasciculatus_S2_contig7883.16043.1|Name=mRNA_E_fasciculatus_S2_contig7883.16043.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7883:391..1831- (Ectocarpus fasciculatus EfasUO2)
ATGGGTCTCACCGCCATCCCGCGGGTGGAGCTGATGAGCTCACTGCCACG
GCGGAGAGGAGTACGACGAGTTCGTCGATGCTTCCGGCAGGCGACCCTCG
CCCCAGCACAAAGCTCGGCGGCTACACCTTTTGGAGGGCTGGGAAAACCG
CTCTCGCCTGCGGCTGAACCATTTGCACCGGTCGTAGCGTCACCACCGGG
AGGAGCTATGCTACTAGCACCCCTGGCACGTGAGCCCTTGGCAGGGCTTC
CCGCTGCGGAGCGTGAGCGATAG
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