mRNA_E_fasciculatus_S2_contig785.16018.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig785.16018.1
Unique NamemRNA_E_fasciculatus_S2_contig785.16018.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig785.16018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT88_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 5.030e-74
Identity = 215/264 (81.44%), Postives = 219/264 (82.95%), Query Frame = 1 
Query:    1 EAKVSAVRADYDAKVAELMADLEATRGEKEQIDSDLIFLKASSRTERLDWNKERKALNRKVAEADARARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLETRLKAALEAAARAEDSAAASIEDVSKITAEVRDSRAGQRHAELWLEKSLAEVDAVHAVLAYERSVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS-----TCSPEVAVGPTAQTPTPESPTSILAGLGG 777
            EAKV+AVRADYDAKVAELMADLEATRGEKEQIDS+LIFLKASSRTERLDWNKERKALNRKVAEADARA XXXXXXXXXXXXXXXXXXXXXXXXXXX    VLETRLKAALEAAARAEDSAAASIEDVSKITAEVR+SRAGQRHAELWLEKSLAEVDAVHAVLAYERS A XXXXXXXXXXXXXXXXXXXXXXXXXXX                                S      C+PEVAVGPTAQTPTPESPTSILAGLGG
Sbjct:    2 EAKVAAVRADYDAKVAELMADLEATRGEKEQIDSELIFLKASSRTERLDWNKERKALNRKVAEADARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVRVLETRLKAALEAAARAEDSAAASIEDVSKITAEVRESRAGQRHAELWLEKSLAEVDAVHAVLAYERSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPYLVDHSMQTPDPTPKLRPHSHPPSPAYGGGSGANGSMCNPEVAVGPTAQTPTPESPTSILAGLGG 265
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BLAST of mRNA_E_fasciculatus_S2_contig785.16018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ27_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 5.650e-66
Identity = 185/263 (70.34%), Postives = 190/263 (72.24%), Query Frame = 1 
Query:  376 DVSKITAEVRDSRAGQRHAELWLEKSLAEVDAVHAVLAYERSVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTCSPEVAVGPTAQTPTPESPTSILAGLGGGDSGPAAXXXXXXXXXXXXXXXXXXXXXXLPAAFPATPPTSPIRSQDDSGVRTPDLDVTRPELFSAARLRSRVGGRGLGMMREDGDDATSDYNYGDLAATTVVRRGGGYQSELLSPPTPTVLFGELAGD 1164
            DVSKITAEVR+SRAGQRHAELWLEKSLAEVDAVHAVLAYERS  A XXXXXXXXXXXXXXXXXXX                                       S CSPEVAVGPT QTPTPESPTSI+AGLG         XXXXXXXXXXXXXXXXXXXXX          TSPIRS+ DSGV TPDLDVTRPELFSA RLRSRVGGRGLGMM ED  DA SDYNY DLA TTV RRGGG+QSE+LSPPTPTVLFGELAGD
Sbjct:   71 DVSKITAEVRESRAGQRHAELWLEKSLAEVDAVHAVLAYERSAVAAXXXXXXXXXXXXXXXXXXXAPYPVDHSMHTPDPTPKLRPHSHPPFPAYGGGGGAT--GSMCSPEVAVGPTVQTPTPESPTSIVAGLG---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPIRSRHDSGVETPDLDVTRPELFSATRLRSRVGGRGLGMMTED-VDAASDYNYDDLAVTTVTRRGGGHQSEVLSPPTPTVLFGELAGD 321
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig785.16018.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.030e-7481.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.650e-6670.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig785contigE_fasciculatus_S2_contig785:2036..6096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size1268
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005640.1
Cds size1266
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.1758494-CDS-E_fasciculatus_S2_contig785:2037..29281696842446.1758494-CDS-E_fasciculatus_S2_contig785:2037..2928Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 2038..2928 -
1696842446.1881704-CDS-E_fasciculatus_S2_contig785:3680..38151696842446.1881704-CDS-E_fasciculatus_S2_contig785:3680..3815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 3681..3815 -
1696842446.1992302-CDS-E_fasciculatus_S2_contig785:5268..53881696842446.1992302-CDS-E_fasciculatus_S2_contig785:5268..5388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 5269..5388 -
1696842446.2098246-CDS-E_fasciculatus_S2_contig785:5976..60961696842446.2098246-CDS-E_fasciculatus_S2_contig785:5976..6096Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 5977..6096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig785.16018.1prot_E_fasciculatus_S2_contig785.16018.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig785 2038..6096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig785.16018.1

>prot_E_fasciculatus_S2_contig785.16018.1 ID=prot_E_fasciculatus_S2_contig785.16018.1|Name=mRNA_E_fasciculatus_S2_contig785.16018.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=422bp
EAKVSAVRADYDAKVAELMADLEATRGEKEQIDSDLIFLKASSRTERLDW
NKERKALNRKVAEADARAREAADGIASAEEEREARKTAEQEVDTRSGEAR
VLETRLKAALEAAARAEDSAAASIEDVSKITAEVRDSRAGQRHAELWLEK
SLAEVDAVHAVLAYERSVAAAAAAAAASHDAPAQQQQQAPYPVDHSMQTP
NPSPTLRPHSHPPSPAYGGGGGGGSGANSSTCSPEVAVGPTAQTPTPESP
TSILAGLGGGDSGPAAAAAAAAAAAAAAAAAAAAAAAPLPAAFPATPPTS
PIRSQDDSGVRTPDLDVTRPELFSAARLRSRVGGRGLGMMREDGDDATSD
YNYGDLAATTVVRRGGGYQSELLSPPTPTVLFGELAGDGGSTTWGVSSAA
AAEAAEAAAAAARPPHMVSGGG
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mRNA from alignment at E_fasciculatus_S2_contig785:2036..6096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig785.16018.1 ID=mRNA_E_fasciculatus_S2_contig785.16018.1|Name=mRNA_E_fasciculatus_S2_contig785.16018.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4061bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:2036..6096- (Ectocarpus fasciculatus EfasUO2)
GAAGCCAAGGTATCGGCGGTGCGGGCCGACTACGACGCGAAGGTGGCGGA
GCTGATGGCGGATCTCGAGGCGACCAGGGGGGAGAAGGAACAAATCGACA
GCGACTTGATCTTCCTCAAGGTGTCTGTCCCGTGCAGTGCGGCAGTAGCA
TCGCAGCATTTTGGTTTGTTTGGTGCGTTTGGCGTCTTTTGTTAAGTTTG
GCATTATTTGTGGCCACGTGGGTTGTAGGCTTCTACATGGCCGAGCGATA
TGTACAGTGCTACGGTGAGAGACTTCAACACAACCCCGCGATGGCCGCAG
CGACGACAACAGGAAGATGATCTCCATGTACACGCTCAGCGGTCTCTTTT
TATCACTTTTCTTTTTCCTTGGGAAGCGACAAGACTCGGGGAATCTGCTC
TCTGTCCGGTGTGACCACCAAAGCGAACAAACATCCCGCACACGTGCACA
CGACGGCGGTGATGCGTACTCCGGCGAAGCGCGCCAGAAGTAGGCGTTGT
TTGGTTTGACTGATATATTGATGTCTGCAGCTTCTTTTGAGAGTAAAGAC
AGCAGAAGTAGCTGCAGCGCATCTCAAGCACGCCACAGTCTCCCCCACAC
ACATGCCATGCTACCGTCTCCAAGTTCGATCGTTTCATCGAATCCTAAGC
CTCCCCTTCCCCTTCTTCGTCGCCACCTTCCCACCCACGAAACCGGTACA
TATCCCAGGCGTCTAGCCGAACCGAGCGGCTCGATTGGAACAAGGAGCGC
AAGGCGTTGAACAGGAAGGTCGCCGAGGCGGATGCTCGTGCCCGCGAGGC
AGCGGACGGCATTGCGAGCGCGGAGGAGGTGAGTTGGTTTGTTGTGCCCT
TATAGCAGCGCGTGTTTTTTTTGTAGCACGAAGGGTGTGGAGTGTGGACT
GCCTTCTGCCGTGGTGCGTGCGTGCAACAGTCAGTGTCATCTAGATCACG
GATGCTGTTGTTGCCAGCTGTCGTTGTTGTTGCGTTGTTGTTGCTGGTGT
TCTCCAAGAAGGCGTCACCGGGCATCATTGCCCTTGCTCCGTTACACAAC
GAGTTCTCACTCCCGTCTGGTTCACGAATGATGTTATTGCCAGCTGTTGT
TGTTTGTTTTCGTTGTTGTTGCTGGCGTTCTTCAAAATAAGGCGTTATCA
TCGGGCACATGACCGCCCTCGCTCCGTTACACAAACGAATATGTCGTGCG
CTGGTGCATGTTGCGGTTCGGCACATTACGAGTGCGCACCACACCGCCCT
GCATGATGAAGCAGACGCTCAACTATTCAACATGATATTGACGGGAGCGG
CACAATTGTTCGATGTTGAGAATAGCAGCCCCCCCCCTCCCCCCCGGTTC
CGTTCTTCCTGCCGTCTCTCACCCCCCCCCGTAGTTTACGGCTCTGCAGA
AGGGCCTGGCAAGCCGCGAGGCGACGATACGGAGCCTCCGGGAGGAGCTG
GGCGCGAAGGAGACCCAGATGGATAAGCTGCGGCTCGAGGCGGCGTGCGG
CTCAACCGTGCAGGGCGATCTCGACACTCTCATGGTCCGCACAGCGACAC
TGGAGCACACACTGGCGAAGGTATGTACATGCCAACAGACGGCAGACGGG
GGGGGGGGGGAACGGGAAGGGGGGGGGGGGACGTACTCGGGTTTTGCATG
CCTTAGTTGTGGGGGGGTGGCAAAGACTCAAGCTAAGTTTCCGAAGTTGG
CTTGCTTTTCGGTCTCTCCTAAGGCAAGGGCACCCACGCTTGTATCTGTT
GTGCAGAGCGACCGATGTGCGACCACGGCAATCAACGGGAAATCAATGGA
CGTGATGAACCGTATGTGCAGGTTCGAGGGCACGGGAGTTGTAGAGATGC
GACCGACGCGACAAACGAGACATGTTCATATTTTTTATATATATATATAC
ATTTTTGCGCAGTGGAGCGGGGTCGGAATAGGAATGACGGTGCTCTTGCT
CGTGTTCTTTTTGGCATCCAGTCCTGTGTGACATGGAATAACGGTGTTCG
TCGCGTGTTCATTCTGGCTCTCTCGATGGGCGCTCTCAACGGGGGGAGGA
GGAACCTGACGGCTGACGCGGCGTTCGGACAAGCGCAGCGTGGATATCAG
GGCAAGAATAGCGTGTCCGCCCGCCTGGGCCCTCTAACTCACGTGTTTGT
TCGTAGCTCCCAAGTCCATCCATGTTCACGTTACACCCTTCTCTCCCCGG
GCTTGGGGTGTCCTTGTCGATTGCCTCTCCGACGGTGGCGGCGGAATAAA
CCCTCTTGCGCCGGCGCCGGCGGCGACGTAGGAGCGGGAGGCGAGGAAAA
CGGCCGAGCAGGAGGTGGACACCCGATCCGGCGAGGCACGGGTGCTCGAG
ACAAGACTCAAGGCCGCCCTGGAAGCAGCGGCTCGCGCGGAAGACAGCGC
GGCTGCCTCCATCGAGGTCAGGGACAAGCAAAAGAAGAACGGAAGAAAGT
GTTGCACGAATCGTCGACAGCGTTCTGGTCTCCGTCAACACATTATTAGA
GCGCACATTTTGCCCCGAAAGTTCGTAAACATGGCGAAGGGTACATGACT
TATGTTTTTGAGGTATTTGTGTACGCTTGCTTGCCCTTTGTCGGCAGAAC
ATAGCAACCTTCCGGAGCTGCCTGCCCCCCTCACCCCCCCCCCCGTCCAA
ATGCTCCCATCTGATGGGTAACGATGCGCACCATCCGGGGTGAAATGGAG
GGATGCTGCCACGGAGATGGATTGTCCAAGGGTCTGAGTGCTGTGTTCCA
CCGTTGGACTCTTTTCGATCTGAACGGCAGATGTTGTTGGTTGTCAAGGG
ACCACTATAAACCAAGGATTCGATTTCATGTGCACGGCCGGACCGAACCG
GTTCACGACACACGCGAAGCGCGGCCACCGGCCTTAGCACCTCCAGCCCG
CCAATTGAAACGGCGGAGAAACCCATGACGCACGAGAAACTAACTCATGT
CGCAAACCACGTTACCTCCGTAACAAGAACTGCACGCACAGCCAGCTGAC
TTGCTCTGCGCCAGCCCTTCCTTTCCTCTACGTCGTCCATCCCGTCCCAA
CCCTGCCCCGCTTCCTTCCCTCTTTCTTTTTTCGGGGGTTTCGTCTTTTG
TCCGCGGCCGGCTCTGTTCTGGAAACCGGGAACTCGGCGGGTACCCCTAC
GAAACAACACAACAACAGGACGTCTCGAAGATCACGGCGGAGGTGCGCGA
TTCTCGGGCGGGGCAGCGGCACGCGGAGCTCTGGCTGGAGAAGAGCCTGG
CGGAGGTGGACGCGGTCCACGCCGTGCTGGCCTACGAGCGCTCAGTCGCG
GCGGCCGCCGCTGCCGCCGCGGCGTCGCACGACGCCCCGGCGCAGCAGCA
GCAGCAGGCGCCATACCCGGTGGACCATTCGATGCAAACCCCTAACCCTT
CCCCAACACTCCGCCCGCACTCGCACCCCCCGTCACCGGCGTACGGCGGC
GGCGGCGGCGGCGGCAGCGGGGCTAATAGCAGCACGTGTAGCCCAGAGGT
GGCAGTAGGTCCCACGGCGCAAACGCCCACCCCGGAGTCTCCGACGTCTA
TCTTGGCGGGTCTCGGTGGTGGCGACAGCGGTCCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCCCCGCTGCCCGCTGCGTTCCCCGCGACGCCGCCGACTTCGCCGATAC
GGAGCCAGGACGACAGCGGCGTGCGGACGCCGGATCTGGACGTGACCAGG
CCGGAGCTATTCTCCGCCGCCCGCCTGCGGTCTAGGGTAGGCGGACGAGG
GCTAGGAATGATGAGGGAGGACGGCGACGACGCCACCAGCGACTACAACT
ACGGCGACCTCGCGGCGACCACGGTCGTTCGAAGAGGCGGCGGGTACCAG
AGCGAGCTTCTCTCCCCGCCCACGCCCACCGTCCTGTTCGGCGAGCTGGC
GGGAGACGGCGGGTCCACGACGTGGGGAGTGAGTTCGGCCGCCGCGGCGG
AGGCGGCGGAGGCGGCGGCGGCGGCAGCACGGCCGCCGCACATGGTCAGC
GGCGGTGGCGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig785:2036..6096-

>mRNA_E_fasciculatus_S2_contig785.16018.1 ID=mRNA_E_fasciculatus_S2_contig785.16018.1|Name=mRNA_E_fasciculatus_S2_contig785.16018.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1266bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:2036..6096- (Ectocarpus fasciculatus EfasUO2)
GAAGCCAAGGTATCGGCGGTGCGGGCCGACTACGACGCGAAGGTGGCGGA
GCTGATGGCGGATCTCGAGGCGACCAGGGGGGAGAAGGAACAAATCGACA
GCGACTTGATCTTCCTCAAGGCGTCTAGCCGAACCGAGCGGCTCGATTGG
AACAAGGAGCGCAAGGCGTTGAACAGGAAGGTCGCCGAGGCGGATGCTCG
TGCCCGCGAGGCAGCGGACGGCATTGCGAGCGCGGAGGAGGAGCGGGAGG
CGAGGAAAACGGCCGAGCAGGAGGTGGACACCCGATCCGGCGAGGCACGG
GTGCTCGAGACAAGACTCAAGGCCGCCCTGGAAGCAGCGGCTCGCGCGGA
AGACAGCGCGGCTGCCTCCATCGAGGACGTCTCGAAGATCACGGCGGAGG
TGCGCGATTCTCGGGCGGGGCAGCGGCACGCGGAGCTCTGGCTGGAGAAG
AGCCTGGCGGAGGTGGACGCGGTCCACGCCGTGCTGGCCTACGAGCGCTC
AGTCGCGGCGGCCGCCGCTGCCGCCGCGGCGTCGCACGACGCCCCGGCGC
AGCAGCAGCAGCAGGCGCCATACCCGGTGGACCATTCGATGCAAACCCCT
AACCCTTCCCCAACACTCCGCCCGCACTCGCACCCCCCGTCACCGGCGTA
CGGCGGCGGCGGCGGCGGCGGCAGCGGGGCTAATAGCAGCACGTGTAGCC
CAGAGGTGGCAGTAGGTCCCACGGCGCAAACGCCCACCCCGGAGTCTCCG
ACGTCTATCTTGGCGGGTCTCGGTGGTGGCGACAGCGGTCCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCCCCGCTGCCCGCTGCGTTCCCCGCGACGCCGCCGACTTCG
CCGATACGGAGCCAGGACGACAGCGGCGTGCGGACGCCGGATCTGGACGT
GACCAGGCCGGAGCTATTCTCCGCCGCCCGCCTGCGGTCTAGGGTAGGCG
GACGAGGGCTAGGAATGATGAGGGAGGACGGCGACGACGCCACCAGCGAC
TACAACTACGGCGACCTCGCGGCGACCACGGTCGTTCGAAGAGGCGGCGG
GTACCAGAGCGAGCTTCTCTCCCCGCCCACGCCCACCGTCCTGTTCGGCG
AGCTGGCGGGAGACGGCGGGTCCACGACGTGGGGAGTGAGTTCGGCCGCC
GCGGCGGAGGCGGCGGAGGCGGCGGCGGCGGCAGCACGGCCGCCGCACAT
GGTCAGCGGCGGTGGC
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