mRNA_E_fasciculatus_S2_contig7829.15998.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7829.15998.1
Unique NamemRNA_E_fasciculatus_S2_contig7829.15998.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7829.15998.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7829contigE_fasciculatus_S2_contig7829:5246..7046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size324
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.5147002-UTR-E_fasciculatus_S2_contig7829:5245..53921696842444.5147002-UTR-E_fasciculatus_S2_contig7829:5245..5392Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7829 5246..5392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.52656-CDS-E_fasciculatus_S2_contig7829:5392..54041696842444.52656-CDS-E_fasciculatus_S2_contig7829:5392..5404Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7829 5393..5404 +
1696842444.538318-CDS-E_fasciculatus_S2_contig7829:6881..70461696842444.538318-CDS-E_fasciculatus_S2_contig7829:6881..7046Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7829 6882..7046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7829.15998.1prot_E_fasciculatus_S2_contig7829.15998.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7829 5393..7046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7829.15998.1

>prot_E_fasciculatus_S2_contig7829.15998.1 ID=prot_E_fasciculatus_S2_contig7829.15998.1|Name=mRNA_E_fasciculatus_S2_contig7829.15998.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=59bp
MEIRTQRRLTVVDDGCLMEAATAAAAAVGRPKGSAQPGTKTATMSQIHAN
KKGHRGFAG
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mRNA from alignment at E_fasciculatus_S2_contig7829:5246..7046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7829.15998.1 ID=mRNA_E_fasciculatus_S2_contig7829.15998.1|Name=mRNA_E_fasciculatus_S2_contig7829.15998.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7829:5246..7046+ (Ectocarpus fasciculatus EfasUO2)
AAAACTGGCTCTAAGATGATGAGCTGATTGTGCCGATTGTTGTACACGAA
CGACGGAGACGCTTTCGCTAGTGATATTGTGCCGCTGCATCCCCCCATCA
CCTGGTAAAGCGCTCTGGAGAGGGGCGAGGCCAGGATAGGCGACGGGATG
GAAATACGTGTGAGTTCTCCTCCCCTGCTGCTTGATCTGAACGCCTTGAA
TTTGCCTCGCTGCAACGGGTTGGGGGGGTTCACAGCAGTCACAGACATAC
ACGGAAACCTGACTTGTGTAACGTGTTTTCAATTGCTGCACATAACAACA
CCGGCGGCGGATGATGCACACTGCGAGTGTGTGCGTGTGTGCGTGCAGCA
GAAACACGCAGCTTGCATGCAAAACACCGCCAGCAGGCCTCTTGTTTGTA
TCGCACAGCTAGCACCTTGCTGTCGGTGTCGTCGCTTTGTACCCACTCTA
CTTGTACCTATATACCTCGGTAACTCGTTCATTCTGTCAATGCTACTGGC
TTTGATTACAATCTGCCTGCATGTACACCTGCGCTGCTGCATGTGTGCAG
CAGCACGCAGGCAGCTTGCAGGCAATAAATACACCGCCAGCAGCATGACG
ATGATCAAAACACTTGCGGCTTACTACCGTTTGTGTTGCACAGCACACAG
CACCTCTCTCTGCTCTTCGTCGGTACAGTGGGGGGCCCTCAATAGTGCGG
GTATGTGTCGAGAGTGTAGCTAGTCGAGAGACAACATAAACTCGGCACTA
TACCGGGCATCGGCACTATTCAATCGGCACTATAGAGGGCCCCCCACTCT
GTATTCATATTTTCATATTTTCAGTATTTTGCACAGCAGGAATCAGGCTG
TGTACAGCGTATTTCAGTCACAATGTCACAATGCTGGCAGCTTCGCTTTC
CGAGTTCCGCAAAAGATAGCACTGGAAGCTCCCGACTTATTTGTTGTTAG
CATATCTTCTGCTACTACGTAGGCAGTGGAACACGTCCACATTATCAATC
CTGTCCATGGCTCCGAGAGCAAACAGGAGCAGACAGAAACACGCGCTGTA
GAGCTGCCGCAGGCAACAGGCCGAGCGCACTCCTAAATAGCAACGGACAT
GGAAGTGCAATGCTGTACGAAGGCGTCATCACGCGGTGGCTTGCGTTGTT
AAGGGGAACCCCCCCCCCCATACGTCGCAGAGAAACGTGCATGGTCAAAC
AAATGCAATTTTGTGCAGAGAAGACGTACATCCGTCCCCCCCGCCCGCTG
CGAGGTCAATGGTCTACTGGCGGAGGCAGCAAAACATGGGTAACCCACCC
CAGTCCCCACCCCGAATGCCAATCGGCGATCGGTCGTGTGGGAATGAAAA
GCTTAGTCCTCTCGAGGACGTGTAGTCAGTGACCAATCGAACAGCAAATA
AGTACGCCCCGATTGGCCATCTTCGATCGGCCCTGGAATAAAAGCTGGGT
CGGGGACGCGTGGCCCATTGTCTTACCGTTAAGGCATGCAGAACATGAGT
ACCCCTCCCCCCCCCGATTGGCCATCGGCGATCGGCCCTGTAGGAATACA
AGGCTCAATCTGGGGCGCATTGTCCATGGTCGAACCGCTAAGGCATGCAA
AACATGGGTAACCCCCCCCCTCCCTTTTCGAAACAGACCCAAAGACGCCT
CACAGTCGTGGACGACGGCTGCCTGATGGAGGCTGCCACCGCCGCCGCTG
CTGCCGTCGGGCGCCCCAAGGGCTCAGCGCAACCGGGCACCAAGACCGCT
ACCATGAGCCAAATACACGCGAACAAGAAGGGGCACCGCGGTTTTGCCGG
G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7829:5246..7046+

>mRNA_E_fasciculatus_S2_contig7829.15998.1 ID=mRNA_E_fasciculatus_S2_contig7829.15998.1|Name=mRNA_E_fasciculatus_S2_contig7829.15998.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7829:5246..7046+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAATACGTACCCAAAGACGCCTCACAGTCGTGGACGACGGCTGCCT
GATGGAGGCTGCCACCGCCGCCGCTGCTGCCGTCGGGCGCCCCAAGGGCT
CAGCGCAACCGGGCACCAAGACCGCTACCATGAGCCAAATACACGCGAAC
AAGAAGGGGCACCGCGGTTTTGCCGGG
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