mRNA_E_fasciculatus_S2_contig7827.15996.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7827.15996.1
Unique NamemRNA_E_fasciculatus_S2_contig7827.15996.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7827.15996.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN0_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 3.900e-119
Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = 2 
Query:  209 LQAPVIYVEAPHMYYQGRVPKMPPCPRHGWQPDGEVESKGWTKGRRVSGVLEDAYLLGTKHVCRLCKQNRLALEESLMACPAAADDAERRRRKETLRKSSYVFRSYDPEVSRLYAQRYPWMALQTSSFVFTKKKAMTHELALLLRQMQGPGGPSAKPPRTAAEREIQVRQSIERIRQAQLALAAEISAEHRAAMPALPQPAQ 814
            L APVIYVEAPHMYYQG+VPKMPPCPRHGWQP+GEVESKGWTKGRRVSGVLEDA+LLGTKHVC+LCKQNRLALEESLMACP AADDAERRRRKE LRKSSYVFRSYDPEVSR+YAQRYPWMA QTSSFVFTKKKAMTHELALLLRQMQGPG PSAK PRTAAEREIQVRQ+IER+RQAQ+ALAAEI AEHRAAMPAL QPAQ
Sbjct:  441 LPAPVIYVEAPHMYYQGKVPKMPPCPRHGWQPEGEVESKGWTKGRRVSGVLEDAFLLGTKHVCKLCKQNRLALEESLMACPPAADDAERRRRKEILRKSSYVFRSYDPEVSRMYAQRYPWMASQTSSFVFTKKKAMTHELALLLRQMQGPGAPSAKSPRTAAEREIQVRQAIERVRQAQVALAAEIDAEHRAAMPALFQPAQ 642
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7827.15996.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P7_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 6.340e-117
Identity = 185/199 (92.96%), Postives = 192/199 (96.48%), Query Frame = 2 
Query:  209 LQAPVIYVEAPHMYYQGRVPKMPPCPRHGWQPDGEVESKGWTKGRRVSGVLEDAYLLGTKHVCRLCKQNRLALEESLMACPAAADDAERRRRKETLRKSSYVFRSYDPEVSRLYAQRYPWMALQTSSFVFTKKKAMTHELALLLRQMQGPGGPSAKPPRTAAEREIQVRQSIERIRQAQLALAAEISAEHRAAMPALPQ 805
            L APVIYVEAPHMYYQG+VPKMPPCPRHGWQPDGEVESKGWTKGRRVSGVLEDA+LLGTKHVC+LCKQNRLALEESLMACPAAADDAERRRRKE LRKSSYVFRSYDPEVSR+YAQRYPWMA QTSSFVFTKKKAMTHELALLLRQMQGPG PSAK PRTAAEREIQVRQ+IER+RQAQ+ALAAEI AEHRAAMPAL Q
Sbjct:  447 LPAPVIYVEAPHMYYQGKVPKMPPCPRHGWQPDGEVESKGWTKGRRVSGVLEDAFLLGTKHVCKLCKQNRLALEESLMACPAAADDAERRRRKEILRKSSYVFRSYDPEVSRMYAQRYPWMASQTSSFVFTKKKAMTHELALLLRQMQGPGAPSAKSPRTAAEREIQVRQAIERVRQAQVALAAEIDAEHRAAMPALSQ 645
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7827.15996.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.900e-11992.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.340e-11792.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7827contigE_fasciculatus_S2_contig7827:657..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1012
Hectar predicted targeting categoryother localisation
Exons5
Cds size837
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7827.15996.1prot_E_fasciculatus_S2_contig7827.15996.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7827 832..4517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.3429174-UTR-E_fasciculatus_S2_contig7827:656..8311696842444.3429174-UTR-E_fasciculatus_S2_contig7827:656..831Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7827 657..831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.3632789-CDS-E_fasciculatus_S2_contig7827:831..9691696842444.3632789-CDS-E_fasciculatus_S2_contig7827:831..969Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7827 832..969 +
1696842444.37628-CDS-E_fasciculatus_S2_contig7827:2472..25891696842444.37628-CDS-E_fasciculatus_S2_contig7827:2472..2589Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7827 2473..2589 +
1696842444.3867211-CDS-E_fasciculatus_S2_contig7827:3086..33151696842444.3867211-CDS-E_fasciculatus_S2_contig7827:3086..3315Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7827 3087..3315 +
1696842444.3971393-CDS-E_fasciculatus_S2_contig7827:3694..39531696842444.3971393-CDS-E_fasciculatus_S2_contig7827:3694..3953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7827 3695..3953 +
1696842444.4103296-CDS-E_fasciculatus_S2_contig7827:4423..45171696842444.4103296-CDS-E_fasciculatus_S2_contig7827:4423..4517Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7827 4424..4517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7827.15996.1

>prot_E_fasciculatus_S2_contig7827.15996.1 ID=prot_E_fasciculatus_S2_contig7827.15996.1|Name=mRNA_E_fasciculatus_S2_contig7827.15996.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=279bp
MVSAAAAGGGGLQAPVIYVEAPHMYYQGRVPKMPPCPRHGWQPDGEVESK
GWTKGRRVSGVLEDAYLLGTKHVCRLCKQNRLALEESLMACPAAADDAER
RRRKETLRKSSYVFRSYDPEVSRLYAQRYPWMALQTSSFVFTKKKAMTHE
LALLLRQMQGPGGPSAKPPRTAAEREIQVRQSIERIRQAQLALAAEISAE
HRAAMPALPQPAQLPLPALPPAAAAAAPVAPVGPGPVAPPPQPLPPQVSD
GGEGDGDGGGGGRCARNGVGHDAAAGAAS
back to top

mRNA from alignment at E_fasciculatus_S2_contig7827:657..4517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7827.15996.1 ID=mRNA_E_fasciculatus_S2_contig7827.15996.1|Name=mRNA_E_fasciculatus_S2_contig7827.15996.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3861bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7827:657..4517+ (Ectocarpus fasciculatus EfasUO2)
CGGCAATCCCAGGTCAAGCTGCTGTGCAAAAGAGGGTACCTGTCCAGGGC
GTACTCCTGCGTCTTTTACCCCAAGGGACCCGCATCGTCGGAAGTGAAGG
CAGGGGCGGGGGCGGGGGCGGGGGCCGGGGCCGGGGTCGGAGCGAAAGCA
GCGCCGGTGGGCGAGGCGAGAGGGAATGGTGTCGGCGGCGGCGGCGGGGG
GGGGGGGGCTTCAGGCCCCCGTTATCTACGTAGAAGCGCCTCACATGTAC
TACCAAGGGAGGGTGCCCAAGATGCCGCCGTGTCCGAGGCACGGGTGGCA
GCCGGACGGCGAGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTA
TTATTAGCATCGACCGCGCTAACCGGCTGACCAATGTGTGTGTGTGTGTG
TGTGTTTTTTCGCATCGACCGCGCTAACCGGCTGACCAAATGAAAATGCG
CCAGTTCTAATTGCGGCCAAAGGCGGTATGTGTGTGTGTGTTTGTTAAAT
GTATCGGCCGTGCTAACCGGCTGACCAATGAAATGACGCCAACCTCAGTG
CGGCGAAAAGTGCGCGCGCGCGCGCGTGGTTGTGTTTGTGTGTGTTTCAA
TTACTGTAGCATCGTCAGTGCTAGCCTGCTGACCAATGCAAAGACGCCGG
TGTCAGTGCGGCGAAAAGCGGCGTGTGTGCGTGTGTGTGTGTGTTGGGTA
TGTGGGCAGAGGCCAAAAGCCCGGCGGGAGAGATTTTGGTGGCTTGGCAT
CCGTGAGGGGTGTGTGGATCTGGCACCGTCCGATCTCGATGGTCGGTGAT
TGGTGTTGATAGCGCAGTTGTGGCTCCGATATGAGGGTGGTGCGACAAAG
GCCGTCGACCCTCTTACATCGAAGCCCCCTCTTTATTTCCGGAATAAGAA
GGTACAGCAGTACCCAACTAAACTAGGGCGGACCGAGTCCGTGACAAACC
GATTTCGAGCTTCTCATATCGGAGCCCCCTTCTTGTAAGGTAGCCGCCAC
TATCGGAGCCGCGATGAACACGGCGTAGATCTTGTTGTATTGTTGGCGGG
TCTTCTCGGTGTTGTTTGTTCTGGCGGGGTGGTTGCTGAGCTCGTTCGTG
GCGATTGATGCCGAAGACTAGCCGGCGGTCGTTATTGTCGTGGGATCTTC
TGTCCTTCCTGCTTCTCCGGGAGAGAATGCACGCCAGCAAGCAGCCACCT
AGCGGAGAGGCGTGTCTCCCGGAGACAAGAGGGGGTCATACGGTAGAGGG
AGAGGGGTTTACTCCACACCTAAGGCTTTTATTTTCCGTGCGTGGAGGGA
TGGCTGCGTTAACCCCTCGCCGCTGGAAAACATGCCGGGAGGTTACCCAA
AAGCTCTTGGATTCGTTGTCGGCTTCGCGTTGCGTCGACAAGGGGCGGAG
GGAGGGAATATCGTGCGTGTGTCGGTCGCGCCATTCGTGGGAGACGCTTG
TTGACCGAGGACATGTGTAGTCTTCCAACAGGAGGCACACGAATCTTTAT
GGTATCACGACGGACGGTGGTGTTGTGGTTGGGTCTTCATTGCCCACCCT
TCTCGGGTTGATGAGATTGAAACGAACGCCGGCGACGTGTGACCTCACCT
CCGTGCAACAGGGAGACTTAGGGCTCTTCTCGGCAAGCACTGACGAGGTG
TCGCGTAGTTGGAGGTTGCTTTCTCGCACCGCTGTCATTTACCTGCTGTG
TATACACGAACAAACACCGGCAACATGCTTGTGCTTCCAACCGAGATTTG
CGTCGAAGCGAAAGCTCAAGACTGCTGTTGTTGACGTTGTTTGTCTTTTG
ACCGCTGCTTGTTCAGGTCGAGTCGAAGGGTTGGACCAAAGGCCGGCGCG
TGTCGGGCGTGCTGGAAGACGCCTATCTGCTGGGCACGAAGCACGTGTGC
AGGTTGTGCAAACAGAACCGGCTGGCGCTGGAGGTGAGCTAATAAATAGT
ACAGTAATAGTGCTGACGTCGTCTTCGTCGTCTTCGGTTGTTTCATTTTT
GTTGCGTCGCTTCTTGTTGCAACGTTGCAACCCTTCTCTGGAGGGTGATC
GTTGGTGTCCAGTGGGGAGCGGCGGCGGCGGCGGGCACGGCTGGGACACA
TAGCCCAAAATCTAATGTGCGCGCGCGTTTGTTGTCCGTGTGTGTTGTCA
AGTTTTCTTCCCCATCTCGCCGACATTGTCAGCCACGTGTACGCCTTTTG
TGAGTCTTGTCTGTTTCCGAGAAGGGTTCCTATAACCGCCAACAGTTGTG
AACTTCGGACATGTTTCTTCCTCCCTCGCTCCCCTGCCCTCTCTCTCGTT
GTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
GTTTTGCCTCTCCCGGTCTCCCTTTCCCCCGCCACCTCCTCCCCTCCCTC
CCTCCGTCCCTCCCTCCCCCCACCTCTCAGGAGAGCCTCATGGCCTGCCC
CGCCGCCGCTGACGACGCCGAGCGGCGGCGGCGTAAGGAGACCCTCCGCA
AGAGCAGCTACGTCTTCCGCTCCTACGACCCGGAGGTGTCGAGGCTGTAC
GCGCAGAGGTACCCGTGGATGGCGTTGCAGACGTCCTCCTTCGTGTTCAC
CAAGAAGAAGGCAATGACGCACGAGCTCGCGCTGCTGCTGAGGCAGATGC
AGGGCCCCGGTGAGGCGGCGGCAGGGGGGAGGAAACAACGGGGTTTGACC
CGCTTCCAGCTCTATGGTATCCTATGTAGCACCTGTTTTTTTTTTTTTTC
GGTGGTACAGTTGTCGCTCGCCCTCGCCCTCGCCACCGACGGTGCCGTTG
TCGTTGTTTTTTGCCGCGGGCGCTCAGATATTCTCTGCTTTAATCTCATG
GTGTTTCTCTGTCTGTCTGTCTGTCTCTCTCTCTGCCGACTGTATTTCTT
TTTCCCACTGCCGACTCTTGCCGTGGTTTTTGGGTTGTATAATCCTCCAC
CCAACAACGCCCACGACGACGGCATCCCGTAAACCCAACCCCTCTTAAAC
GGCCACTCTAACGGCACGCGGCCTTTTTCTAACGACAGGTGGCCCATCTG
CGAAGCCGCCGCGGACGGCGGCGGAACGCGAGATCCAAGTCCGCCAGTCC
ATCGAGCGGATCCGGCAGGCGCAACTGGCTCTCGCCGCGGAAATCAGCGC
CGAGCACCGCGCTGCCATGCCGGCGCTTCCCCAACCGGCACAGCTTCCTC
TGCCGGCACTGCCACCGGCAGCGGCAGCGGCGGCGCCGGTGGCGCCGGTG
GGACCAGGGCCGGTCGCGCCGCCACCGCAACCATTACCCCCGCAAGTGTC
ACCGGCGGCAGCGGCGGCGGCTGCAGCGGCGGTGTGGGGGTCGGGGGTCG
GGGCGGGGGCGCCGCCACCGCCGATGATGCAGGCGCTCGCCGGCTCTGCT
ACCCCGCCCGCTCTTGCCTTCGCCTCGAGCCCTCCCGGCGGCGTTGGGCA
GCCTGGCGTCGGGGGGCTGGCCGGAGGAGCGCCGTTGCTTTCGCCTGTCT
TGCAGCTTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAGCAG
GGGTCTGCTAGAGCCCAACCGCTGCCGGCGGTGACCACGGCGATGGCGCC
CGCCTTCCCGTTCTTGCAAGCCGCGGCCGTCTTCCCCCCTCCGGTTGACG
CGCCGGCGCCGCCGGCGCCGCCGGCACCAGCACCGCTGGCAGGAGAAGGA
GGAGCTCGGCGCGTAGCGGTGGGAGGCGTGGATCTGCGTTTCCCTACGCT
GGCGCCTGCTGCGGAAGCAGCGACGGCGGCGAAGGCGACGGCGACGGCGG
CGGTGGAGGCCGTTGCGCCAGGAACGGGGTCGGACACGATGCTGCCGCCG
GTGCCGCCTCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7827:657..4517+

>mRNA_E_fasciculatus_S2_contig7827.15996.1 ID=mRNA_E_fasciculatus_S2_contig7827.15996.1|Name=mRNA_E_fasciculatus_S2_contig7827.15996.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=837bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7827:657..4517+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGTCGGCGGCGGCGGCGGGGGGGGGGGGGCTTCAGGCCCCCGTTAT
CTACGTAGAAGCGCCTCACATGTACTACCAAGGGAGGGTGCCCAAGATGC
CGCCGTGTCCGAGGCACGGGTGGCAGCCGGACGGCGAGGTCGAGTCGAAG
GGTTGGACCAAAGGCCGGCGCGTGTCGGGCGTGCTGGAAGACGCCTATCT
GCTGGGCACGAAGCACGTGTGCAGGTTGTGCAAACAGAACCGGCTGGCGC
TGGAGGAGAGCCTCATGGCCTGCCCCGCCGCCGCTGACGACGCCGAGCGG
CGGCGGCGTAAGGAGACCCTCCGCAAGAGCAGCTACGTCTTCCGCTCCTA
CGACCCGGAGGTGTCGAGGCTGTACGCGCAGAGGTACCCGTGGATGGCGT
TGCAGACGTCCTCCTTCGTGTTCACCAAGAAGAAGGCAATGACGCACGAG
CTCGCGCTGCTGCTGAGGCAGATGCAGGGCCCCGGTGGCCCATCTGCGAA
GCCGCCGCGGACGGCGGCGGAACGCGAGATCCAAGTCCGCCAGTCCATCG
AGCGGATCCGGCAGGCGCAACTGGCTCTCGCCGCGGAAATCAGCGCCGAG
CACCGCGCTGCCATGCCGGCGCTTCCCCAACCGGCACAGCTTCCTCTGCC
GGCACTGCCACCGGCAGCGGCAGCGGCGGCGCCGGTGGCGCCGGTGGGAC
CAGGGCCGGTCGCGCCGCCACCGCAACCATTACCCCCGCAAGTCAGCGAC
GGCGGCGAAGGCGACGGCGACGGCGGCGGTGGAGGCCGTTGCGCCAGGAA
CGGGGTCGGACACGATGCTGCCGCCGGTGCCGCCTCC
back to top