mRNA_E_fasciculatus_S2_contig7825.15994.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7825.15994.1
Unique NamemRNA_E_fasciculatus_S2_contig7825.15994.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs.
Match: HMG (box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.420e-50
Identity = 177/244 (72.54%), Postives = 182/244 (74.59%), Query Frame = 1 
Query:  298 TDASGQGPTTTVQQAGPLSPSLDGAAPAPXXXXXXXGVEGATGGGAAVLATASGPETTPA------PAGXXXXXXXXXXXXXXXQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPASTASPNGVAAPASTXXXXXXXXXXXXXXXXGGQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 1011
            TDA+ Q PTT VQQAGPLS  LDGAAPA        GVEG TG              TPA         XXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXX     VGP S A  +G+ A    XXXXXXXXXXXXXXXX  QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:   96 TDATVQNPTTIVQQAGPLSLGLDGAAPASGGGGSGVGVEGVTGXXXXXXXXXXXXXXTPAVPVPVAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGAGVGPISAAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 339
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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs.
Match: HMG (box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.980e-44
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:  733 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 1011
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 232
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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs.
Match: Uncharacterized (protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J476_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-5
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  727 GGQSK-PQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQA 930
            GG+ K P SAW+LF + +R++VKRDNP+IA T+  K+++  WK L  +E++ +          YK ++A
Sbjct:    3 GGRPKRPMSAWLLFCEAKRDEVKRDNPEIAFTEINKVIAGKWKALTEEEKKPFEEEAAKRFEEYKGKKA 71
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
HMG2.420e-5072.54box domain-containing protein n=1 Tax=Ectocarpus s... [more]
HMG2.980e-4490.32box domain-containing protein n=1 Tax=Ectocarpus s... [more]
Uncharacterized2.580e-539.13protein n=2 Tax=Guillardia theta TaxID=55529 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7825contigE_fasciculatus_S2_contig7825:49..2801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1041
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 orthologEc-11_002940.1
Cds size1041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.176414-CDS-E_fasciculatus_S2_contig7825:48..1531696842444.176414-CDS-E_fasciculatus_S2_contig7825:48..153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7825 49..153 -
1696842444.1881127-CDS-E_fasciculatus_S2_contig7825:418..5231696842444.1881127-CDS-E_fasciculatus_S2_contig7825:418..523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7825 419..523 -
1696842444.203573-CDS-E_fasciculatus_S2_contig7825:1122..12361696842444.203573-CDS-E_fasciculatus_S2_contig7825:1122..1236Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7825 1123..1236 -
1696842444.2153134-CDS-E_fasciculatus_S2_contig7825:2084..28011696842444.2153134-CDS-E_fasciculatus_S2_contig7825:2084..2801Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7825 2085..2801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7825.15994.1prot_E_fasciculatus_S2_contig7825.15994.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7825 49..2801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7825.15994.1

>prot_E_fasciculatus_S2_contig7825.15994.1 ID=prot_E_fasciculatus_S2_contig7825.15994.1|Name=mRNA_E_fasciculatus_S2_contig7825.15994.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=347bp
MADTGGAGASASSLVAAAAASAVAASTFATADGGGDGGSGGNGTSSPAPA
EPQAAAAAAAAAAVSGSSSPQLPPMSHSVSNAAAAAAAAAAAATTTAPPT
DASGQGPTTTVQQAGPLSPSLDGAAPAPGGGGSGVGVEGATGGGAAVLAT
ASGPETTPAPAGPAPATPAAATPAAEPQTTETSAVPAVAAVAAAPTAPAP
AAGAAGAGVGPASTASPNGVAAPASTTGGGAGTSSGKKRASSGGQSKPQS
AWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRARD
DQKRYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMGEPVPRLLWL*
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mRNA from alignment at E_fasciculatus_S2_contig7825:49..2801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7825.15994.1 ID=mRNA_E_fasciculatus_S2_contig7825.15994.1|Name=mRNA_E_fasciculatus_S2_contig7825.15994.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2753bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7825:49..2801- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGACACGGGCGGTGCTGGTGCCTCCGCCTCTTCCCTGGTCGCCGC
GGCGGCCGCTAGCGCCGTCGCAGCTTCGACCTTCGCGACCGCGGACGGTG
GCGGCGACGGCGGTAGCGGCGGCAACGGCACCTCATCCCCGGCCCCCGCA
GAGCCACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGTGTCGGGGTC
GTCGTCGCCACAGCTCCCTCCGATGTCTCACTCCGTGTCGAATGCCGCCG
CCGCTGCTGCGGCCGCCGCGGCCGCGGCGACGACTACGGCACCCCCCACG
GATGCGTCCGGCCAGGGGCCTACCACAACCGTACAGCAAGCGGGTCCTCT
GAGCCCCAGCCTCGACGGCGCCGCCCCCGCCCCCGGCGGCGGCGGCAGCG
GGGTGGGGGTCGAAGGGGCTACTGGCGGTGGAGCGGCGGTGTTGGCGACC
GCCTCGGGTCCAGAGACAACACCGGCACCGGCGGGGCCGGCGCCGGCAAC
ACCGGCGGCGGCAACACCAGCGGCGGAACCACAAACGACGGAAACATCGG
CGGTACCGGCGGTGGCGGCGGTTGCGGCGGCACCGACGGCGCCGGCGCCG
GCCGCGGGAGCGGCTGGGGCGGGGGTTGGGCCCGCAAGTACGGCTAGCCC
GAACGGTGTCGCGGCGCCGGCGAGTACGACGGGAGGAGGGGCGGGGACAT
CGTCGGGCAAGAAGCGGGTGAGCGAGGGTGGGCTGGGGGCTTGCGCTTCT
CATAATGCAATCTGATACATCTGAAAACCAACACCATGCACGTCAGGCGG
GCAATTGAGACAACAAGCCCACCCCAACCCTTCATTTCATGGTTGTTTGG
TGTTTTCATCAAAACGGAGCACAGCACGAGACGATCAAGCCGCCGGGAAA
GCACACACACATCAGTAATTCGAACACGAGCGCGCCGTCGTGCCCCACAA
TTAAAGAGTGTTGTCTTCAGCAGAAGGAGTGCGAGCGGGTAGATGCGTTG
CGCGGGCTACTTTTGCGAGTGGTGTGGGTTTTTTTGGTGGATGGGTATGA
TGTGCGCTTATTTATGACGTGGTACGTCGTACCTGGTGTACTTGGGGGGG
GGGGCTTACGGGATGGGTCGTTTGTGACGGAGCGGGGTATGGTGTGTAAA
GGTGTAGAATAGCAAGAAAACAAAACAAGTACAAGTCCGTCCTGTTGTAG
CCGCGGCTGATACGTCAGAAATCGTTCGCCAAAAGGTGTGCAGACCGGCG
CCATTTCAGACGAGACCAACACACACACGGCTCCAGCTGAGCCTCCCCCA
TGACAACCCCTCACGGGGTCGGTCCCAGATCATGGTATGGTAGCCTTTCA
GAAGCATTTTCTGATGTCAGCCGCCCGGAGACTGACGTATTGTCATTGGT
CAGCCGGGTAACGCGGTGGATGCTTATCAATAAGAAAGCACACGCGCACA
GCCTGTTGGCGACGGGGCGTACGTGTGCCACGTGCGATAGGACTTGACGC
GAGACGACGAGTTCAGCAAATACTACCAAACTAGAATCATTTCATTTTTA
TATTTCGCTTCGCAGGCGTCGTCGGGGGGTCAGTCGAAGCCGCAGTCGGC
GTGGATGCTGTTCATCCAGGAGCGGCGCGAGCAGGTCAAGCGCGACAACC
CGGACATCGCCGTCACACAGCAGCAGAAGGTGTGAAGAGACGGGATGACA
GCAGGGGCGCGGGGGAGGGGCGTGGGGGGGGGGGGGTCGAGAGTCAGTCG
GTTACCTTAGGCCCCAAGACCGGCGAGACCACTCTGCAATGTTTTTTTTT
TGTGGTTTGGATTTTTGCGTTTGAGGCGATGAAGTGCTGCTATCCCCGAG
TGCATCACCCCTCCGATGGGTTCTTTGTATGTGACGGTGTATGTAGACTA
CTGTTGTGTTAGCGTGGGTAGAAGACACGGTCTTCTAGCTTCGTGTCTTA
TCGTTATGTTCGCGATGACCGAAATGCTCCTTGCCTTTGGGAAGGGGCAC
CAGGGTAGGGATGTTCACAAGAGTAGTAATGTGTGCCTTCCCAACAACCA
ACAGCAAGAATAAAATTTGAAACGAATACTACCGTATCCAAGCATATGTT
CCCTACTGGAAACCGTTGTGGTGTAAATACACACGTACTGGAAGGAAATT
TATATCACCGATAAAATCGCCCCTGAAACGTGTGGTTTGGTTTGGTTTGT
GTCGTCACCTCTTCGCTCGCTTACCGGTGAGACTCATCTTCTGCCGGTGC
AACGGCGAATCGATAACCTCTCTCTCAGATCATGAGCGAGATCTGGAAGA
CGCTGGCCAACGACGAGCGAGAGGCCTACCGCACCCGAGCCAGGGACGAC
CAGAAGCGGTATAAGGCCGAGCAGGCGGACAAGGTGCGGTCTACGTTGTT
GTTGTTGTTGTTGTCGTTGTTGCTGAGGCTGTGGTTACGTTATCTCAATA
CAAAATACCCTCGTGGTTCGTGTTTCCTCTCTCGATTGTTGTGGCTTTCG
GTCTTTTTCACACACCCTCTTCTCTCTCTCTCTTCCCCGCTCTCTTCTGT
TTATTCCGTCTGTGTGCGCGTCTACGTGCCTGTCTAACTCTCCGTTTTTT
TTTTCTTTTTCGTATGTATCTCTATCCCGCCGGCCTCGCTCGACGCAGCC
GGTCGTGAAAAAAGAGGAGTTTTACAGCAACGACGAAAAGGGCCAGTCCA
CCGAGTTGGTTTGTCCGATGGGTGAGCCAGTACCACGCTTGTTGTGGTTG
TAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7825:49..2801-

>mRNA_E_fasciculatus_S2_contig7825.15994.1 ID=mRNA_E_fasciculatus_S2_contig7825.15994.1|Name=mRNA_E_fasciculatus_S2_contig7825.15994.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1041bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7825:49..2801- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGACACGGGCGGTGCTGGTGCCTCCGCCTCTTCCCTGGTCGCCGC
GGCGGCCGCTAGCGCCGTCGCAGCTTCGACCTTCGCGACCGCGGACGGTG
GCGGCGACGGCGGTAGCGGCGGCAACGGCACCTCATCCCCGGCCCCCGCA
GAGCCACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGTGTCGGGGTC
GTCGTCGCCACAGCTCCCTCCGATGTCTCACTCCGTGTCGAATGCCGCCG
CCGCTGCTGCGGCCGCCGCGGCCGCGGCGACGACTACGGCACCCCCCACG
GATGCGTCCGGCCAGGGGCCTACCACAACCGTACAGCAAGCGGGTCCTCT
GAGCCCCAGCCTCGACGGCGCCGCCCCCGCCCCCGGCGGCGGCGGCAGCG
GGGTGGGGGTCGAAGGGGCTACTGGCGGTGGAGCGGCGGTGTTGGCGACC
GCCTCGGGTCCAGAGACAACACCGGCACCGGCGGGGCCGGCGCCGGCAAC
ACCGGCGGCGGCAACACCAGCGGCGGAACCACAAACGACGGAAACATCGG
CGGTACCGGCGGTGGCGGCGGTTGCGGCGGCACCGACGGCGCCGGCGCCG
GCCGCGGGAGCGGCTGGGGCGGGGGTTGGGCCCGCAAGTACGGCTAGCCC
GAACGGTGTCGCGGCGCCGGCGAGTACGACGGGAGGAGGGGCGGGGACAT
CGTCGGGCAAGAAGCGGGCGTCGTCGGGGGGTCAGTCGAAGCCGCAGTCG
GCGTGGATGCTGTTCATCCAGGAGCGGCGCGAGCAGGTCAAGCGCGACAA
CCCGGACATCGCCGTCACACAGCAGCAGAAGATCATGAGCGAGATCTGGA
AGACGCTGGCCAACGACGAGCGAGAGGCCTACCGCACCCGAGCCAGGGAC
GACCAGAAGCGGTATAAGGCCGAGCAGGCGGACAAGCCGGTCGTGAAAAA
AGAGGAGTTTTACAGCAACGACGAAAAGGGCCAGTCCACCGAGTTGGTTT
GTCCGATGGGTGAGCCAGTACCACGCTTGTTGTGGTTGTAG
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