mRNA_E_fasciculatus_S2_contig782.15989.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig782.15989.1
Unique NamemRNA_E_fasciculatus_S2_contig782.15989.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: CBFD_NFYB_HMF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI34_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 3.640e-77
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1
Query:   94 MAEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDRNNANNMMDT 456
            MAEH GGGDDD+EELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDRN ANNMMDT
Sbjct:    1 MAEHTGGGDDDVEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDRN-ANNMMDT 120          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Nuclear (transcription factor Y subunit B4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU51_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.910e-49
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   94 MAEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            MA+   GGD   EELREQDRFLPIANISR++KK LP  AK+AKDAKET QECVSEFIC+IT++ASDKCQ EKRKTI+GEDI+ +M+TLGFD Y+EPLK+YLAKYR +VKG++
Sbjct:    1 MADEWKGGD--AEELREQDRFLPIANISRIMKKSLPDAAKIAKDAKETVQECVSEFICFITSEASDKCQQEKRKTINGEDILWAMSTLGFDKYVEPLKLYLAKYRESVKGEK 110          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHZ1_TRICV)

HSP 1 Score: 165 bits (418), Expect = 6.460e-49
Identity = 76/111 (68.47%), Postives = 97/111 (87.39%), Query Frame = 1
Query:   97 AEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            A HAGG  D+ EE+REQDR+LPIANI+R++K  LP NAK+AKD+KET QECVSEFI +IT++ASDKC  EKRKTI+G+D++ +M+TLGFD Y+EPLK+YLAKYR AV+GD+
Sbjct:    8 APHAGGPGDEYEEIREQDRYLPIANIARIMKNTLPDNAKIAKDSKETVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLAKYREAVRGDK 118          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: CBFD_NFYB_HMF (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5I3_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.350e-47
Identity = 79/118 (66.95%), Postives = 99/118 (83.90%), Query Frame = 1
Query:  124 DIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVK-------GDRNNANNMMDT 456
            D EELREQDRFLPIANISR++KK LP NAK+AKDAKET QECVSEFIC+IT++ASDKC+ EKRKTI+GED++ +M+TLGFD Y++PLK+YL+KYR +VK       G R++A+  M T
Sbjct:    8 DTEELREQDRFLPIANISRIMKKSLPDNAKIAKDAKETVQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVDPLKIYLSKYRESVKLEKPDRKGKRDDASEAMAT 125          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGW8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.760e-47
Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   61 PVPSTIYLRRAMAEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            PV S +    A+A+      DD EE+REQDR+LPIANI+R++K  LP NAK+AKD+KET QECVSEFI +IT++ASDKC  EKRKTI+G+D++ +M+TLGFD Y+EPLK+YLAKYR AV+GD+
Sbjct:   34 PVTSMMSAAAAVADSKNPPGDDYEEIREQDRYLPIANIARIMKNTLPDNAKIAKDSKETVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLAKYREAVRGDK 156          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U1F424_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.420e-47
Identity = 75/112 (66.96%), Postives = 95/112 (84.82%), Query Frame = 1
Query:   94 MAEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            M   A  G DD EE+REQDRFLPIANI+R++K  LP NAK+AKD+KET QECVSEFI +IT++ASDKC  EKRKTI+G+D++ +M+TLGFD Y+EPLK+YLAKYR AV+G++
Sbjct:    1 MEGAAATGGDDYEEIREQDRFLPIANIARIMKLTLPENAKIAKDSKETLQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKIYLAKYREAVRGEK 112          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: CBFD_NFYB_HMF (domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6VZY0_MARPO)

HSP 1 Score: 162 bits (410), Expect = 4.360e-47
Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 1
Query:  103 HAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDRNNANN 444
            +AGGGD D   +REQDRFLPIANISR++KK LP NAK+AKDAKET QECVSEFI +IT++ASDKCQ EKRKTI+G+D++ +M+TLGF+DY+EPLKVYL KYR  ++GD+ ++ N
Sbjct:   20 NAGGGDRDNSNVREQDRFLPIANISRIMKKALPVNAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE-MEGDKGSSIN 132          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKV9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.160e-46
Identity = 76/123 (61.79%), Postives = 99/123 (80.49%), Query Frame = 1
Query:   61 PVPSTIYLRRAMAEHAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            PVP       A+A    G +D+ EE+REQDR+LPIANI+R++K  LP NAK+AKD+KET QECVSEFI +IT++ASDKC  EKRKTI+G+D++ +M+TLGFD Y+EPLK+YL KYR AV+GD+
Sbjct:   28 PVPG------AVATAGNGPNDEYEEIREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLGKYREAVRGDK 144          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SNW2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.950e-46
Identity = 73/109 (66.97%), Postives = 96/109 (88.07%), Query Frame = 1
Query:  103 HAGGGDDDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            HAG  +   +E+REQDRFLPIAN+SR++K+ LP NAK+AKDAKET QECVSEFI +IT++ASDKCQ EKRKTI+G+D++ +MNTLGFD Y++PLKVYL+KYR ++KG++
Sbjct:    8 HAGIEEGPDDEMREQDRFLPIANVSRIMKRSLPQNAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMNTLGFDKYMDPLKVYLSKYRESIKGEK 116          
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Match: Nuclear (transcription factor Y subunit B n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU02_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.870e-46
Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 1
Query:  121 DDIEELREQDRFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQDEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDR 429
            DD +E+REQDR+LPIANISR++KK LP NAK+AKDAKET QECVSEFI +IT++ASDK Q EKRKTI+G+D++ +M+TLGFD+Y+EPLKVYLA+YR +VKGD+
Sbjct:    3 DDQQEVREQDRYLPIANISRIMKKSLPPNAKIAKDAKETVQECVSEFISFITSEASDKVQQEKRKTITGDDVLWAMSTLGFDNYVEPLKVYLARYRESVKGDK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig782.15989.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CBFD_NFYB_HMF3.640e-7797.52domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Nuclear2.910e-4973.21transcription factor Y subunit B4 (Fragment) n=1 T... [more]
Hypothetical6.460e-4968.47protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
CBFD_NFYB_HMF1.350e-4766.95domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.760e-4762.60protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical3.420e-4766.96protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
CBFD_NFYB_HMF4.360e-4768.42domain-containing protein n=3 Tax=Marchantia polym... [more]
Hypothetical1.160e-4661.79protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.950e-4666.97protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Nuclear3.870e-4671.84transcription factor Y subunit B n=1 Tax=Hondaea f... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig782contigE_fasciculatus_S2_contig782:4460..7646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score238.0
Seed ortholog evalue3.9e-60
Seed eggNOG ortholog2880.D8LI34
Preferred nameNFYB
Model size627
KEGG koko:K08065,ko:K14799
KEGG Pathwayko04612,ko05152,ko05166,map04612,map05152,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000981,GO:0001067,GO:0001654,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007423,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0016070,GO:0016602,GO:0018130,GO:0019216,GO:0019218,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022008,GO:0022603,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0044877,GO:0045540,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045676,GO:0045678,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0046532,GO:0046534,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0062012,GO:0065007,GO:0070013,GO:0070491,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090181,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0106118,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902531,GO:1902533,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000027,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG0869@2759
Ec32 ortholog descriptionHistone-like transcription factor, NF-YB subunit
Ec32 orthologEc-04_003060.1
Cds size627
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.6536498-CDS-E_fasciculatus_S2_contig782:4459..48431696842443.6536498-CDS-E_fasciculatus_S2_contig782:4459..4843Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 4460..4843 -
1696842443.6652002-CDS-E_fasciculatus_S2_contig782:7403..76461696842443.6652002-CDS-E_fasciculatus_S2_contig782:7403..7646Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 7404..7646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig782.15989.1prot_E_fasciculatus_S2_contig782.15989.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig782 4460..7646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig782.15989.1

>prot_E_fasciculatus_S2_contig782.15989.1 ID=prot_E_fasciculatus_S2_contig782.15989.1|Name=mRNA_E_fasciculatus_S2_contig782.15989.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=209bp
SPAAVLCERESTRRGVRGNQPVPSTIYLRRAMAEHAGGGDDDIEELREQD
RFLPIANISRLVKKRLPYNAKVAKDAKETTQECVSEFICWITADASDKCQ
DEKRKTISGEDIITSMNTLGFDDYIEPLKVYLAKYRAAVKGDRNNANNMM
DTRGGGGAGAMGGYQDDNAPSSGSMPPSYRGGGSGGGGGGDGWAGGGAAG
GFDMEEEF*
back to top

mRNA from alignment at E_fasciculatus_S2_contig782:4460..7646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig782.15989.1 ID=mRNA_E_fasciculatus_S2_contig782.15989.1|Name=mRNA_E_fasciculatus_S2_contig782.15989.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3187bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig782:4460..7646- (Ectocarpus fasciculatus EfasUO2)
AGTCCAGCAGCAGTATTGTGCGAGAGGGAAAGCACGCGACGAGGTGTACG AGGCAACCAGCCTGTCCCTTCGACGATATACCTCAGAAGGGCTATGGCGG AGCACGCAGGGGGAGGAGATGACGACATCGAGGAGCTGAGGGAGCAGGAC CGCTTTCTGCCAATCGCGAACATCAGTCGCCTTGTGAAGAAACGGCTGCC GTACAACGCCAAGGTTGCCAAAGACGCAAAGGAAACCACGCAGGTAGGCG CACGCTTCTTTGAGGGACCTTGAACAAAGCTGCCGCACGCGCGCGACGAG AGCCCTGTTGCGGCAGTCCTGCGCACCTCGAACTGCTTGGCAGAGTAGAT ACCGCTTTTTGGGGCTTCATGTTGATGCCGCATCGATATTTCGATATTTC CCCTCTTGTCATCTATTGTAGAAGTATCGTGGATCGTGAAGCCAGTTTTT TGTTTTTTGCAGTGCCGCTCATAGCCAGGGACGAGCCTTGACGTGCTCCG CCTGCTGGGAACGCTGTGGCCAACCTTTGCGTGCCGCAATTCTGCCCCAA AGCAGTCAGCGTGTCAGCCAGAGCCCGCCTCTTTTCCTGCAGATCATCAG CTGAACAACATCAGATCAGCAGCGCCGTACGTCCTCGTGACACATCTCAT GTCAAATCCACGCAAGTCAGAATTTTCTTCAACCGCTCGTGCGGTCCCGC GAGAAAGCAGAGGCGGGTGATCCGCCGAGCACGCGACCTTTGTCGAAAAG ATCGATGGAGCTCGCGAGAGAGCGAGAAGAGGCGACCACCAACCACTACA CCGCTCCGTAGGGTAGCGAATGTTGGCCCCGGCCGATACACAAATCGATC AGTGTGCTGCACATGTGTGGCGTGCCAGAAGCCATGATTTGACGGTGTTG ACTCTCGGAATGAATTCCTGCAGGTAGGTGCGTGTGTGGGCTGGTAAATA ACACCGCCCGCGCATACCCCACTTTTTTTAAAGAAAAAATACAAGTACAA ACACCGAAAGACTACCCGTTATCCCCGACCCGAAAGCAAGCAAGGATGTC TGCATCATACGGGCAAGAAGATATCCAGGTCTCCAGCACGCACGATTGCT CCTCCCTCTTGGTTTGCACGGGATGTACATGTACAACCAGAGGCACTGAT CTGCTGCAGGTCAGCACGAGCAGCGTGTTAACTGCCATTTTGAATTCCTT CCGTTCTTTCGAGGAACTTTATTTCCAGCAATGAAAAAAAGTGGCTGCTT CATGCAAATTTGCCGCGTCCTTTGAGTTTTTGCCGCGTCCTTTTGGCTCT CAACCTTTCCCTGTGCGCTCTCTCCCCTCCTGCTGAAGGTAACTATCGGC AGCCTTATCAGGCTCAGAGAGAGAGAGGGGGATATGAATATGCCCTGAGG GGCAGAGATTGAATCTGTTTCTACAGGACGGTGCCTGTGAACTGTCGGGT TGACCGCTCGACCGCTCAAATCACCGCAAGCAGCAACGTACATGTAGACT AGCACAGGAGTTAGCCGACAAAGCTACCAAATATCTTCACACAAATCCAA GATTCCCGATTTCCCGAAAGTTTCAACGAAGACGGGCTTCTCCTGTCGAT GGACGAATGGCTGGCTTGACGCTGCTGACGCTGTGCTATTAATAGGTCAT TGTGGGATTGTGGGAAAAGGCCACCTTGGGGCATACCTTACACACACCGC AATCCGCCCGCAAGACGAATGATGAAAGCAAAACTGAGTTTCACCATCGA GAATTGAGATCTCGCGACAAGAAGAGTGTTCCCCCACCGCCTTTTAATAC TCAGTCCAATCATTCTATCATCGGAACGAGAGACGAAAAGAATGACGCCA CTCACTCTCCCGAGCTTACTACGACTGTGAATGATAAGCACCGGTTGTTA GTTCAGCATGAAACGCCGAACGAACATGAGCAGCTTGCTGATGTACGTCT CTTCGTCGATGCCAATGTAGATGCCCTCTACTACTCCTCCTACGAGATGA CCCCTGACATTGGTGCTGGACTAACCTTCCACCGTAGGTATCTATGCTAG ATAGGTCATTTCCTTTCGTGAGATGCAGCCGAGGAAGAAAGTGCCGAGGT ACACTCAAGCGGCAACCAACCGCAGCAGTAGACTTTAGCCAAGCGTTTGA CAACCGGGGTAGGTAAAGAAAGTGAGTCGGAGGGGGGGTTTCATGGGCCC ACCTCCTCCGCGGATCAAGACCCTCCGTCCTTCGCAGGGACGATGAGCCT ACCTCGTAAAGACTATGAGGTCTCGGTGTTTTGCCGGGGATCCCAATGGG CTTTACTGGAGGAGTGCATGTGTCCATAATCTGTCTGGGAACAAGACACA TGTATGCCTGCCCTTGCCATTACGGGCACTTGTAATTGCGCATCGGTGCC ACGCCTCAGGCAGTAGCCTACGCAGCAAAATTGATTAAGCAAACATATGG GATGAAGTATTGAATCCATGCTTTGGGGTTGGGGTTAGGGTTGGGATAGG GTCTGCGTGCCCCCTCCCTATTCTTTTCCTAGATACTCTTAAAATCCTGC GTAGGCGGTCCTCAGGCGGCGACGGTGTCTTGCGCATAAGCACCGACACA CGTTAAGCACCGACATCATCATCAGTCATGCTCAACGCGCGGGATACGCG CAGCAGCTTTCGGTATATATATATAGTCCTACTTTACGCTATAGACAACT GCTCTACGGTTACCCATCTACCACCAAAGACTACAATGGATCGATGACAA TGTTTGTTTTACGTCCGTTCACCCTCCCGTTGCGTTTTCCCTCGTGATTG CAGGAGTGCGTGTCGGAGTTTATCTGCTGGATCACCGCCGACGCCAGCGA CAAGTGCCAGGACGAAAAGCGCAAGACCATCAGCGGCGAAGACATCATAA CGTCCATGAACACGCTGGGGTTCGATGATTACATCGAGCCCCTCAAGGTC TACCTCGCCAAGTACCGCGCCGCCGTCAAGGGCGACAGAAATAACGCCAA CAACATGATGGACACAAGAGGAGGAGGAGGAGCAGGGGCGATGGGAGGTT ATCAAGACGACAACGCACCATCTAGCGGGTCCATGCCACCGTCTTATCGG GGTGGTGGCAGCGGAGGAGGTGGCGGTGGGGATGGTTGGGCGGGAGGCGG TGCGGCGGGGGGGTTCGACATGGAGGAGGAGTTCTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig782:4460..7646-

>mRNA_E_fasciculatus_S2_contig782.15989.1 ID=mRNA_E_fasciculatus_S2_contig782.15989.1|Name=mRNA_E_fasciculatus_S2_contig782.15989.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=627bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig782:4460..7646- (Ectocarpus fasciculatus EfasUO2)
AGTCCAGCAGCAGTATTGTGCGAGAGGGAAAGCACGCGACGAGGTGTACG
AGGCAACCAGCCTGTCCCTTCGACGATATACCTCAGAAGGGCTATGGCGG
AGCACGCAGGGGGAGGAGATGACGACATCGAGGAGCTGAGGGAGCAGGAC
CGCTTTCTGCCAATCGCGAACATCAGTCGCCTTGTGAAGAAACGGCTGCC
GTACAACGCCAAGGTTGCCAAAGACGCAAAGGAAACCACGCAGGAGTGCG
TGTCGGAGTTTATCTGCTGGATCACCGCCGACGCCAGCGACAAGTGCCAG
GACGAAAAGCGCAAGACCATCAGCGGCGAAGACATCATAACGTCCATGAA
CACGCTGGGGTTCGATGATTACATCGAGCCCCTCAAGGTCTACCTCGCCA
AGTACCGCGCCGCCGTCAAGGGCGACAGAAATAACGCCAACAACATGATG
GACACAAGAGGAGGAGGAGGAGCAGGGGCGATGGGAGGTTATCAAGACGA
CAACGCACCATCTAGCGGGTCCATGCCACCGTCTTATCGGGGTGGTGGCA
GCGGAGGAGGTGGCGGTGGGGATGGTTGGGCGGGAGGCGGTGCGGCGGGG
GGGTTCGACATGGAGGAGGAGTTCTGA
back to top