mRNA_E_fasciculatus_S2_contig7816.15986.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7816.15986.1
Unique NamemRNA_E_fasciculatus_S2_contig7816.15986.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7816.15986.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7816contigE_fasciculatus_S2_contig7816:2006..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size495
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.4223197-UTR-E_fasciculatus_S2_contig7816:2005..21991696842443.4223197-UTR-E_fasciculatus_S2_contig7816:2005..2199Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7816 2006..2199 +
1696842443.4613273-UTR-E_fasciculatus_S2_contig7816:2499..25001696842443.4613273-UTR-E_fasciculatus_S2_contig7816:2499..2500Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7816 2500..2500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.4402523-CDS-E_fasciculatus_S2_contig7816:2199..24991696842443.4402523-CDS-E_fasciculatus_S2_contig7816:2199..2499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7816 2200..2499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7816.15986.1prot_E_fasciculatus_S2_contig7816.15986.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7816 2200..2499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7816.15986.1

>prot_E_fasciculatus_S2_contig7816.15986.1 ID=prot_E_fasciculatus_S2_contig7816.15986.1|Name=mRNA_E_fasciculatus_S2_contig7816.15986.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
MRVARLFGFLWPKQSFSACPVDDAKPCFDLILHKERRTWNTRCHQRTGSC
GSVHTCEQDIRVLLSVSFSIGGFYPVKILKNQVFFGQIHSGREGVELLR*
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mRNA from alignment at E_fasciculatus_S2_contig7816:2006..2500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7816.15986.1 ID=mRNA_E_fasciculatus_S2_contig7816.15986.1|Name=mRNA_E_fasciculatus_S2_contig7816.15986.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7816:2006..2500+ (Ectocarpus fasciculatus EfasUO2)
GCCATCACGGCCAGCTTGGCGTTGTTGAGGGTGTGGTCCTCCTCGTAACC
CATCTCCAGCACCTGTTGCCCGTTACAGGTACAGCAGAACTTGAGAACCT
CTTGAGCACTTGAGAACCTCTGGCTGTGTCCGAGACTCTTTTTACTTTTT
GTCATAGCACTGTTAGCCCTGCGCCTGACCCCCCAAAATGTTGTATGCGC
GTGGCACGGCTATTCGGCTTTCTCTGGCCAAAACAAAGTTTTTCCGCTTG
TCCGGTTGACGACGCCAAACCTTGTTTTGACTTGATATTACACAAGGAGA
GGAGAACGTGGAATACTCGATGCCATCAACGAACTGGCTCTTGCGGTTCA
GTACACACATGTGAACAGGACATACGCGTGTTGTTGTCGGTCAGTTTTTC
AATCGGCGGATTCTATCCCGTCAAAATCCTCAAAAATCAAGTATTTTTCG
GCCAAATTCACAGCGGCCGCGAGGGTGTGGAGCTTTTGCGATAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7816:2006..2500+

>mRNA_E_fasciculatus_S2_contig7816.15986.1 ID=mRNA_E_fasciculatus_S2_contig7816.15986.1|Name=mRNA_E_fasciculatus_S2_contig7816.15986.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7816:2006..2500+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCGTGGCACGGCTATTCGGCTTTCTCTGGCCAAAACAAAGTTTTTC
CGCTTGTCCGGTTGACGACGCCAAACCTTGTTTTGACTTGATATTACACA
AGGAGAGGAGAACGTGGAATACTCGATGCCATCAACGAACTGGCTCTTGC
GGTTCAGTACACACATGTGAACAGGACATACGCGTGTTGTTGTCGGTCAG
TTTTTCAATCGGCGGATTCTATCCCGTCAAAATCCTCAAAAATCAAGTAT
TTTTCGGCCAAATTCACAGCGGCCGCGAGGGTGTGGAGCTTTTGCGATAA
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