mRNA_E_fasciculatus_S2_contig7783.15948.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7783.15948.1
Unique NamemRNA_E_fasciculatus_S2_contig7783.15948.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.120e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1
Query:    1 AVKAAKQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            AVKAAKQAVEEGKT VVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLR+SLAACG
Sbjct:  999 AVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACG 1086          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K872_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-16
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            ++A   GKT +V++V IGADSKA ++VL+   K+AP ++FMG S E  G+ GKL  F+AV  A AEGG +ADEW+R++L  CG
Sbjct:   93 EEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCG 175          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG01_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-15
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            ++A   GKT +V++V IGADSKA ++VL+   K+AP ++FMG S E  G+ GKL  F+AV  A AEGG +ADEW+R++L  CG
Sbjct:  260 EEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCG 342          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCJ1_CYCTE)

HSP 1 Score: 74.7 bits (182), Expect = 3.710e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   22 AVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            AVE GK  +V+ V IGADSKA ++V++ V  +AP ++F+G + E PG+ GK + F+ V  A  E G+KADEW+RA+L  CG
Sbjct:   21 AVEAGKKVLVLPVDIGADSKASQKVMNSVKSMAPEMAFLGVTEEDPGSGGKAMAFALVPDALVEEGIKADEWVRATLEVCG 101          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXE9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.090e-12
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   49 VMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            V++V IGADSKA ++VL+ V K+AP ++FMG S E  G+ GKL+ F+ V  +  + GLKADEW+R +L  CG
Sbjct:  888 VLNVDIGADSKASQQVLNAVKKIAPDMAFMGLSEEEQGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCG 959          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.060e-11
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   34 GKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            G   +V +VAIG DSKAVKRVLD V   AP L+FMG S    GA G+LL F+    AA   GL AD W+ A++AACG
Sbjct:  867 GARSLVTEVAIGGDSKAVKRVLDAVQAAAPELAFMGLS-PAAGADGRLLCFALCGDAARAAGLGADAWVAAAMAACG 942          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y449_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.340e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
            ++AV+ G+  + ++V IG D+KA+K+VLD ++K AP L+F+  S++      K+L F+ V  +  + G+KAD W+RA+L  CG
Sbjct:   33 QEAVKAGRQSLAVEVGIGTDNKAIKKVLDTIAKEAPELAFLAVSSDSGEEDSKMLCFATVPASMLDAGVKADAWVRAALEPCG 115          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 8.610e-10
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   22 AVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVA-GAAAEGGLKADEWLR 243
            A+ EGK  +V+++ IGADSKA ++V+  V K+AP L+FMG S E  G+ GK+L F+ V  G   + GLKA+EWL+
Sbjct:  649 ALAEGKRTLVLNLDIGADSKASQKVIKAVQKIAPDLAFMGISEEEAGSGGKILCFAIVPEGVTDDTGLKANEWLK 723          
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD66_THAPS)

HSP 1 Score: 60.8 bits (146), Expect = 7.720e-9
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAA-EGGLKADEWLRASLAACG 264
            ++A+ +GK  +V+++ IGADSKA ++V+  V K+AP ++FMG S E PG+ GK+L F+ V  +   E GLKA+EW +  L + G
Sbjct:  812 EKALIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDSLMKETGLKANEWTKEVLDSVG 895          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Alanine--tRNA2.120e-4197.73ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_... [more]
Hypothetical2.040e-1651.81protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.290e-1551.81protein n=2 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical3.710e-1549.38protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Alanine--tRNA8.090e-1251.39ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44... [more]
Alanine--tRNA2.060e-1154.55ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Hypothetical2.340e-1139.76protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Alanine--tRNA8.610e-1049.33ligase n=1 Tax=Thalassiosira oceanica TaxID=159749... [more]
Alanine--tRNA7.720e-944.05ligase (Fragment) n=1 Tax=Thalassiosira pseudonana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7783contigE_fasciculatus_S2_contig7783:3694..4909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score155.6
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D8LCV6
Model size266
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
Cds size264
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.9105468-CDS-E_fasciculatus_S2_contig7783:3694..37451696842439.9105468-CDS-E_fasciculatus_S2_contig7783:3694..3745Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 3695..3745 -
1696842439.9287603-CDS-E_fasciculatus_S2_contig7783:4090..42461696842439.9287603-CDS-E_fasciculatus_S2_contig7783:4090..4246Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 4091..4246 -
1696842439.9421995-CDS-E_fasciculatus_S2_contig7783:4852..49091696842439.9421995-CDS-E_fasciculatus_S2_contig7783:4852..4909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 4853..4909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7783.15948.1prot_E_fasciculatus_S2_contig7783.15948.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7783 3695..4909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7783.15948.1

>prot_E_fasciculatus_S2_contig7783.15948.1 ID=prot_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=88bp
AVKAAKQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSA
EGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG
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mRNA from alignment at E_fasciculatus_S2_contig7783:3694..4909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7783.15948.1 ID=mRNA_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:3694..4909- (Ectocarpus fasciculatus EfasUO2)
GCGGTGAAGGCGGCGAAACAGGCGGTCGAGGAGGGGAAGACCTGCGTCGT CATGGATGTAAGTTGTTTTTGTTGATCGTTCATGTTTTGTTCGTCCTCGT CATCTTGTTCGTCGTTGTGGCGTGGTGGTTGTTGCTGCCGGTTTGGTTGC TGTTGCTGTTGTTGTGCTTTTTGTCCCATTTATTGTGGCGCCAGTCTTTG CACACTCCTCAGTGTACATGTTTGACAATTCCGCCGGGGTCGTACGGGAG GCAGGTCGCAAAGCAGCTCTCTTTATTGTCGCTTTGGACCAACACAATCG ACCGGTTTGTTTGTGTGCGCCTATTGTCTTTGTCGCTTGTTACGATTTCG TGTGCTGCCCACCCTGAGTTTTGTAGAAAGCACCGCACCAACCTATTGGG CCCCCACCAACGGCGATTCACCGAGGAATTTGCCAGTGGTTTCATGACTG CGGCGACTTAGCCCTCCCCCTCCGCCTTCAAGCTGAGAATACCAGCTTGT GGCTCTCCCTTGTGAAACGCAAGTACAGCCTGGGCCGGCGAGAACCCGGC ATATCGCTCCGCCCCGGCATTATTGTAGGGATGCGAGGTCGATGGTCTAA CGAATAGGACAAGCGCTTACATGAGTAACCCCCACCCCCCTTCCCACGTC TCCCCCTCCCCAGGTGGCCATCGGGGCGGACTCGAAGGCCGTGAAGAGAG TCCTCGACGGCGTTTCTAAGGTCGCGCCGGGGCTTTCGTTCATGGGCTTT AGCGCCGAGGGACCCGGGGCCACGGGAAAACTACTGGTTTTCAGCGCCGT GGCAGGGGCTGCGGCAGAGGTGCGTGTTCGTTTGTTTATGTAACTGCTTG CGCCTTTTGGAATGGTTCCCGAAGGAATGGCGGCAACCCCAAATGTACCT GTGGCACACAGGTGCGAGCATGTTCGTTTCTCATCGAATTGGGTTTCCCG ACCTGAGGGAGGCATTCGTTCTCTCATCATCCCTAATAATTGTCATCCTC GTCTCTTTAGTGTACGGAATATTCTTTCTAGTTTTATTCCGTCTTTTGGC GCCCCCTCTCCTCCCTCCTACCGGTTCTATTGCTTTTCTAACGGAACGCA AAAAAAAAAAGAAAAATCGCAGACAACGGGGATAAATCATCTATTTTTCT CATCTTTTCTTCAGGGCGGGCTTAAGGCGGACGAGTGGCTTCGTGCTTCG CTCGCGGCTTGCGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7783:3694..4909-

>mRNA_E_fasciculatus_S2_contig7783.15948.1 ID=mRNA_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=264bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:3694..4909- (Ectocarpus fasciculatus EfasUO2)
GCGGTGAAGGCGGCGAAACAGGCGGTCGAGGAGGGGAAGACCTGCGTCGT
CATGGATGTGGCCATCGGGGCGGACTCGAAGGCCGTGAAGAGAGTCCTCG
ACGGCGTTTCTAAGGTCGCGCCGGGGCTTTCGTTCATGGGCTTTAGCGCC
GAGGGACCCGGGGCCACGGGAAAACTACTGGTTTTCAGCGCCGTGGCAGG
GGCTGCGGCAGAGGGCGGGCTTAAGGCGGACGAGTGGCTTCGTGCTTCGC
TCGCGGCTTGCGGG
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