mRNA_E_fasciculatus_S2_contig7780.15945.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7780.15945.1
Unique NamemRNA_E_fasciculatus_S2_contig7780.15945.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: FAD-binding (PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K8_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 2.150e-149
Identity = 239/298 (80.20%), Postives = 245/298 (82.21%), Query Frame = 1
Query:    1 EGVLGLARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGG--ATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATG------------------------------------RADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPPA 780
            E VL LARGRLAEVLSAVEFMD+E VALTLEKCQGVRSPFPPPT G+DD GGHKYYVLIETSGSDA+HDAEKMEGFLEAAMELG VVDGAVAQDLSQLQAMWSLREHAPVAVSL+GYTYKYD+SIPVGDFKALADETRRRLRGLFPEGGG  ATVVAYGHLGDGNLHLNVCV  +A GG GG  EP AATG                                    RADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPE VLGVMR VKGMLDPRGIMNPFKVLPPA
Sbjct:  273 ESVLSLARGRLAEVLSAVEFMDKETVALTLEKCQGVRSPFPPPTTGSDD-GGHKYYVLIETSGSDADHDAEKMEGFLEAAMELGSVVDGAVAQDLSQLQAMWSLREHAPVAVSLAGYTYKYDISIPVGDFKALADETRRRLRGLFPEGGGGAATVVAYGHLGDGNLHLNVCV--SADGGSGGGEEPTAATGGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAWRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEAVLGVMRDVKGMLDPRGIMNPFKVLPPA 567          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: FAD-binding (domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z5Y5_COCSC)

HSP 1 Score: 214 bits (545), Expect = 4.150e-62
Identity = 120/260 (46.15%), Postives = 163/260 (62.69%), Query Frame = 1
Query:   19 ARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRAD--VLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPPA*ASR 792
            AR +L E+LSA EF+D++++ LTLE  +GVR+P P        D    +Y+++ETSGS+  HD EKMEGFLE  ME G V+DG +AQD +Q  A+W LRE   VA+  +G  YKYD+S+PV +  +L +ETR+RL GL  E     VV YGHLGDGNLHLN+                  +T   D  +L  +EPFV+EW  +RRGS+SAEHG+GQ K   +   + +  + +M  +K + DP GI+NP+KVLP   ASR
Sbjct:  250 ARQKLGEILSAFEFLDQQSLELTLEHLEGVRNPLP--------DTQTPFYLVVETSGSNEAHDYEKMEGFLEEVMEEGWVLDGTIAQDSTQTAAIWGLREGISVALKHAGAVYKYDLSMPVPEMYSLVEETRQRLAGLPVE-----VVGYGHLGDGNLHLNI------------------STKHYDENILKHIEPFVYEWTAARRGSVSAEHGLGQMKADCIGYTKSQEAVKLMGQIKRVFDPNGILNPYKVLPQDGASR 478          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BB78_CHRCT)

HSP 1 Score: 214 bits (544), Expect = 1.390e-61
Identity = 123/255 (48.24%), Postives = 159/255 (62.35%), Query Frame = 1
Query:   13 GLARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPP 777
            G A+  L EVLSAVEF+D E+  L L    GVR+P          +G  ++Y+LIE SGS+  HD+EK+  FLE  ME G V DG +AQD +Q Q +W +RE    A+S SG  YKYDVSIP+ +  +L +E R RL     E  GA V  +GHLGDGNLHLN+  P        G  E +A     +V AA+EPFVFEW+  RRGSISAEHG+G  K  +L + +   ++ VM+G+K  LDP+ IMNP+KVLPP
Sbjct:  294 GAAKRDLGEVLSAVEFLDSES--LELVTAHGVRAPL---------EGNCRHYMLIELSGSNEAHDSEKLSTFLENVMESGAVADGTIAQDTTQSQGIWKVREGITEALSKSGAVYKYDVSIPLTELYSLVEEMRVRL-----EPHGALVSGFGHLGDGNLHLNIHTP--------GVFEKSA-----EVHAAIEPFVFEWIAQRRGSISAEHGIGVMKPAFLHMSKTSQMINVMQGIKNQLDPKNIMNPYKVLPP 519          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: D-2-hydroxyglutarate (mitochondrial-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JB16_9EUKA)

HSP 1 Score: 211 bits (538), Expect = 8.190e-61
Identity = 119/255 (46.67%), Postives = 153/255 (60.00%), Query Frame = 1
Query:   13 GLARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPP 777
            G A+  L EVLSAVEF+D E+  L      G   P  P         G ++Y+L+E SGS AEHD  K+ GFLE  M  G V DG +AQD +Q Q +W +RE    A+   G  YKYDVSIP+ +   L +  R RL     E  GA V  +GHLGDGNLHLN+  P           +PA       VLAA+EPFV+EW+  RRGSISAEHG+G  K  +L + + E ++ +MRG+KG+LDP+GI+NP+KVLPP
Sbjct:  284 GAAKRDLGEVLSAVEFLDAESYELVNRHLGGRPPPLAP---------GSRHYMLLELSGSRAEHDQAKLSGFLEHVMAEGLVADGTIAQDQAQSQGIWRVREGITSALGKEGAVYKYDVSIPLAELYTLCEVMRARL-----EAHGALVTGFGHLGDGNLHLNIYTPGRFN------KDPA-------VLAAIEPFVYEWIAERRGSISAEHGLGVMKPAFLRMSKSESMIELMRGIKGLLDPKGILNPYKVLPP 511          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: D-2-hydroxyglutarate (dehydrogenase, mitochondrial-like isoform X2 n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8E2R4_PUNGR)

HSP 1 Score: 208 bits (530), Expect = 2.050e-60
Identity = 114/254 (44.88%), Postives = 153/254 (60.24%), Query Frame = 1
Query:   19 ARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRAD--VLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLP 774
            A+ +L E+LSA EF+D +++AL L   +GVR+P PP          H +YVLIET+GS+  +D EK+E FL +AME G + DG VAQD+ Q  ++W +RE  P A+  +G  YKYD+S+PV     L +E R RL  L      ATVVAYGHLGDGNLHLN+  P                  + D  +LA +EPFV+EW    RGSISAEHG+G  K   +   +    + +M  +K +LDP GI+NP+KVLP
Sbjct:  211 AKRKLGEILSAFEFLDEQSMALALSHLEGVRNPLPPSL--------HNFYVLIETTGSNESYDREKLEAFLLSAMEGGLISDGIVAQDIQQASSVWHIREGLPEALIKAGANYKYDLSLPVEKLYNLVEEMRTRLENL------ATVVAYGHLGDGNLHLNISAP------------------QYDDAILAQIEPFVYEWTSKNRGSISAEHGLGLMKANKILYSKSPAAVNLMASIKKLLDPNGIVNPYKVLP 432          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUZ8_9EUKA)

HSP 1 Score: 210 bits (534), Expect = 2.790e-60
Identity = 124/262 (47.33%), Postives = 158/262 (60.31%), Query Frame = 1
Query:    1 EGVL---GLARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPP 777
            EGVL     A+  L EVLSAVEF+D+E+  L      GVR P   P+         ++Y+LIE SGS+  HD+EK+  FLE  ME G VVDG +AQD +Q Q +W +RE    A+S SG  YKYDVSIP+ +   L +E R RL  L     GA V  +GHLGDGNLHLN+  P        G  E + A     V  A+EPFVFEW+  RRGSISAEHG+G  K  +L + +   ++ VM+G+K  LDP  I+NP+KVLPP
Sbjct:  268 EGVLETFSAAKRDLGEVLSAVEFLDQESFELVTS--HGVRDPLGAPS---------RHYMLIELSGSNEAHDSEKLSAFLENVMEGGAVVDGTIAQDQTQSQGIWKIREGITEALSKSGAVYKYDVSIPLTELYTLVEEMRARLAPL-----GALVSGFGHLGDGNLHLNIYTP--------GVFEKSQA-----VHEAIEPFVFEWIAERRGSISAEHGIGVMKPAFLHMSKTPQMINVMQGIKTQLDPNNILNPYKVLPP 500          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: FAD-binding (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX4_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.980e-60
Identity = 120/256 (46.88%), Postives = 148/256 (57.81%), Query Frame = 1
Query:    7 VLGLARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRADVLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLP 774
            +  LA+  L E+LSAVE MD  AV   + +C G++ P     +GA       + VL+ETSGS  EHD  KM   L+ A     V DG +AQD+SQ   +W++REH PVA +  GY YKYDVS+P+  F  L    RRR + L      A    YGHLGDGNLHLNV                  A    +VL ALEPFVF+WVV+  GSISAEHGVGQHKR +L LQ+    L +M  +K   DPRGI+NP KVLP
Sbjct:  253 LFALAKTALGEILSAVELMDSLAVETAMARCPGLKRPME-LEDGA-------FAVLLETSGSCEEHDKAKMGALLDRAFAAEIVDDGVIAQDMSQAADLWAIREHVPVAAATGGYQYKYDVSVPIPRFYELVRAVRRRFQELSLAEDRAAAFGYGHLGDGNLHLNVVC----------------ARKDDEVLRALEPFVFDWVVAAGGSISAEHGVGQHKRAFLGLQKGPEALALMAAIKRAFDPRGILNPGKVLP 484          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: FAD-binding (PCMH-type domain-containing protein n=5 Tax=Prunus TaxID=3754 RepID=A0A251NCB4_PRUPE)

HSP 1 Score: 206 bits (525), Expect = 1.050e-59
Identity = 112/254 (44.09%), Postives = 152/254 (59.84%), Query Frame = 1
Query:   19 ARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRAD--VLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLP 774
            A+ +L E+LSA EF+D +++ L L    GVR+P PP          HK+Y+LIET+GSD  +D +K+EGFL  AME G + DGA+AQD++Q  + W +RE  P A+  +G  YKYD+S+PV     L +E R RL         A VV YGHLGDGNLHLN+                  +T + D  +L  +EPFV+EW    RGSISAEHG+G  K   +   +P   + +M  +K MLDP+GI+NP+KVLP
Sbjct:  208 AKRKLGEILSAFEFLDSKSLDLVLNHLDGVRNPLPPTL--------HKFYILIETTGSDEPYDRQKLEGFLLHAMEAGLISDGALAQDINQASSFWRIREGIPEALMKAGAVYKYDLSLPVEKMYDLVEEMRTRLSDS------ANVVGYGHLGDGNLHLNI------------------STAQYDDGILTQIEPFVYEWTSKHRGSISAEHGLGLMKANEIFYSKPTATVSLMASIKKMLDPKGILNPYKVLP 429          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4A3_PYTOL)

HSP 1 Score: 208 bits (529), Expect = 1.330e-59
Identity = 117/254 (46.06%), Postives = 154/254 (60.63%), Query Frame = 1
Query:   19 ARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRAD--VLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLP 774
            A+  L EVLSAVEF+DR+++ + L +    + P          +  + YY+LIETSGS+ EHD EK+E +LE+AM  G VVDG VAQD  Q + ++ +RE   +A+S  GY YKYDVS+P+  +  +  +TR RL        GA VV YGHLGD NLHLNV                  +T   D  V  ALEPFVFEW    RGSISAEHG+G HK  YL L + +  + +MR +K M+DP+GI+NP+KVLP
Sbjct:  278 AKQHLGEVLSAVEFLDRQSLDMVLSQQDWTKDPL---------ESSYPYYLLIETSGSNTEHDMEKLEAYLESAMTKGMVVDGTVAQDAVQARKLFMIREDITLALSQRGYVYKYDVSLPISQYYDIVKDTRDRLEEF-----GAKVVGYGHLGDCNLHLNV------------------STLEYDERVFQALEPFVFEWTSKYRGSISAEHGIGTHKPEYLHLSKEKNAINLMRQMKQMMDPKGILNPYKVLP 499          
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Match: Putative (oxidoreductase n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RM20_ROSCH)

HSP 1 Score: 209 bits (533), Expect = 1.520e-59
Identity = 118/254 (46.46%), Postives = 149/254 (58.66%), Query Frame = 1
Query:   19 ARGRLAEVLSAVEFMDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDAEKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYKYDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCVPAAAGGGDGGAGEPAAATGRAD--VLAALEPFVFEWVVSRRGSISAEHGVGQHKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLP 774
            A+ +L E+LSA EF+D  A+ L L    GVR+P PP          H +YVLIET+GSD   D EK+E FL  AME G + DGA+AQD++Q  A W +RE  P A+  +G  YKYD+S+PV     L DE R RL      G  A VV YGHLGDGNLHLNV  P                  + D   LA +EPFV+EW  + RGSISAEHG+G  K   +   +P   + +M  +K MLDP+GI+NP+KVLP
Sbjct:  347 AKRKLGEILSAFEFLDSHALDLVLNHLDGVRNPLPPTI--------HNFYVLIETTGSDETCDREKLEAFLVHAMEGGLISDGAIAQDINQASAFWYIREGVPEALMKAGAVYKYDLSLPVEKMYDLVDEMRTRL------GDSANVVGYGHLGDGNLHLNVSTP------------------QYDDKTLAQIEPFVYEWTSAHRGSISAEHGLGLMKANKIFYSKPTATVNLMASIKKMLDPKGILNPYKVLP 568          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7780.15945.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FAD-binding2.150e-14980.20PCMH-type domain-containing protein n=1 Tax=Ectoca... [more]
FAD-binding4.150e-6246.15domain-containing protein n=2 Tax=Coccomyxa TaxID=... [more]
Hypothetical1.390e-6148.24protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
D-2-hydroxyglutarate8.190e-6146.67mitochondrial-like protein n=1 Tax=Chrysochromulin... [more]
D-2-hydroxyglutarate2.050e-6044.88dehydrogenase, mitochondrial-like isoform X2 n=2 T... [more]
Hypothetical2.790e-6047.33protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
FAD-binding9.980e-6046.88domain-containing protein n=1 Tax=Tribonema minus ... [more]
FAD-binding1.050e-5944.09PCMH-type domain-containing protein n=5 Tax=Prunus... [more]
Uncharacterized1.330e-5946.06protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Putative1.520e-5946.46oxidoreductase n=2 Tax=Rosoideae TaxID=171638 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7780contigE_fasciculatus_S2_contig7780:3808..5864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score198.4
Seed ortholog evalue3.9e-48
Seed eggNOG ortholog248742.XP_005650598.1
Preferred nameD2HGDH
Model size985
KEGG koko:K18204
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006089,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016898,GO:0019516,GO:0019752,GO:0022900,GO:0022904,GO:0032787,GO:0036094,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0051990,GO:0055114,GO:0071704,GO:0071949,GO:0097159,GO:1901265,GO:1901363,GO:1901615
Exons3
EggNOG free text desc.FAD linked oxidases, C-terminal domain
EggNOG OGs34GN7@3041,37IKT@33090,COG0277@1,KOG1232@2759
Ec32 ortholog descriptionFAD-linked oxidase-like, C-terminal
Ec32 orthologEc-26_003740.1
EC1.1.99.39
Cds size723
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.7016292-UTR-E_fasciculatus_S2_contig7780:3807..38671696842439.7016292-UTR-E_fasciculatus_S2_contig7780:3807..3867Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7780 3808..3867 +
1696842439.747489-UTR-E_fasciculatus_S2_contig7780:5662..58641696842439.747489-UTR-E_fasciculatus_S2_contig7780:5662..5864Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7780 5663..5864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.7146184-CDS-E_fasciculatus_S2_contig7780:3867..40561696842439.7146184-CDS-E_fasciculatus_S2_contig7780:3867..4056Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7780 3868..4056 +
1696842439.7241151-CDS-E_fasciculatus_S2_contig7780:4432..47481696842439.7241151-CDS-E_fasciculatus_S2_contig7780:4432..4748Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7780 4433..4748 +
1696842439.7378585-CDS-E_fasciculatus_S2_contig7780:5444..56621696842439.7378585-CDS-E_fasciculatus_S2_contig7780:5444..5662Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7780 5445..5662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7780.15945.1prot_E_fasciculatus_S2_contig7780.15945.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7780 3868..5662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7780.15945.1

>prot_E_fasciculatus_S2_contig7780.15945.1 ID=prot_E_fasciculatus_S2_contig7780.15945.1|Name=mRNA_E_fasciculatus_S2_contig7780.15945.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=241bp
MDREAVALTLEKCQGVRSPFPPPTNGADDDGGHKYYVLIETSGSDAEHDA
EKMEGFLEAAMELGPVVDGAVAQDLSQLQAMWSLREHAPVAVSLSGYTYK
YDVSIPVGDFKALADETRRRLRGLFPEGGGATVVAYGHLGDGNLHLNVCV
PAAAGGGDGGAGEPAAATGRADVLAALEPFVFEWVVSRRGSISAEHGVGQ
HKRGYLSLQRPEGVLGVMRGVKGMLDPRGIMNPFKVLPPA*
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mRNA from alignment at E_fasciculatus_S2_contig7780:3808..5864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7780.15945.1 ID=mRNA_E_fasciculatus_S2_contig7780.15945.1|Name=mRNA_E_fasciculatus_S2_contig7780.15945.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2057bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7780:3808..5864+ (Ectocarpus fasciculatus EfasUO2)
GAGGGCGTCCTCGGCCTCGCGCGCGGCCGCCTGGCGGAGGTGCTGTCCGC TGTGGAGTTCATGGACAGGGAGGCGGTGGCGCTGACGCTGGAGAAGTGCC AAGGGGTGCGGAGCCCCTTTCCGCCGCCGACCAACGGTGCCGACGATGAT GGGGGTCATAAGTACTACGTGCTGATCGAGACGTCCGGGAGCGATGCCGA GCACGACGCGGAGAAAATGGAAGGGTTTCTTGAGGCGGCGATGGAGCTCG TGAGTGTGGTTGGGGTTTCACGGAGATGATATGGAGTTGACAGAGAGCGA CGACGGTGCTGCTGCTACAAAAAGTGGCACTGTATTGTCTGCCTGGCTGT CTTGTATCTGCAGCAGTTCACGGGGGAACTATCAGGGTTTGACCGCCAAT GTAGCGTTTCTTCCCATCGAAAGCCAGGGCTCCCGTCCCTTTCCGATTGC CCGCCCGTGCGACCAACAATTGGAAGGCCTACACGGCAGAAGCGCCGTGA CCGCTTCCAATGCAATGCAAAGTGACGGAAAACAAACTATTCTGCCGCCA TTCCTCACCGACCACCCGCGCCCCCCCCGCTGCGGGCTTTTCGCCCCCCC CCCTGGAACCAAAACGCGGTAGTAGGGCCCCGTGGTGGATGGCGCGGTGG CACAAGACCTGAGCCAGCTGCAGGCGATGTGGTCCCTGCGCGAGCACGCA CCCGTGGCAGTCTCCCTGTCCGGGTACACCTACAAGTACGACGTCTCGAT CCCCGTCGGAGACTTCAAGGCCCTGGCCGACGAGACGCGCCGACGACTGA GAGGCCTGTTCCCGGAGGGAGGTGGGGCTACGGTGGTGGCCTACGGCCAC CTCGGGGACGGAAACTTGCACCTCAATGTCTGCGTTCCGGCGGCCGCGGG AGGCGGCGACGGGGGCGCTGGGGAGCCGGCCGCAGCAACAGGTGTGTGTG TGTGGGGAGGACGTGTTGTTGAAGTACCTACCAGTCGCATGCTGTTCTCG TTCTTGTGGACGAATGCACCGTTTAGACCAAGATGGCAAATGAGAGTCGG ACAAATTCATGTGTTGATAGCTTGTGAATGGCTGACTGCCACGCATGCGC AAGACATCCAGACAGGCAGCCAGCCGCATCATCCCTGCCTCGCTCGAATC TCTCCGTGTTCTCCACTCGTCGAACCACAACCAGCTGTACGACCACACCA CAATCAACAACTAAGCAGACGACGCGTATCTATGGATGCGGGTTCGTCGT CGAAGTCCGATGCTGCTGTATAGATGCGCAGACGGGCGTATGCCGTCTAC CCCGGCGGCGGCAATCGTTCGCTGGTACGTACGTACATGGTTGGCGCTTG CCGGTGTTCTGCCGTGCGGTTACTCGCCTTGGGTCACTCGTCCACACCGC GCCCTTCTCTCTCTGTGACTATCTCGAACTCTGTCTGTGTCTGTGTCTGT CTGCCTTTCTGTCTGTCTCTCTCTCTGGCTCTCTCTCTCTCTGGCTCTCT CTCTCTTTCCCTCCCTCCCTCCCTCCCTCTGTCTCTTTCCTGCCGTCGCC AATCACCCCCCGAACCCCCGCCGTGCCGTGCCGTGCCGTGCCCTGCACCG TCGTCTCGCCAACCGCCTCCCTCTCCCTCCCGCGAAGGGCGCGCGGACGT GCTGGCGGCGCTGGAGCCCTTCGTGTTCGAGTGGGTGGTCTCGAGGAGGG GCAGCATCAGCGCGGAGCACGGCGTGGGGCAGCACAAGCGGGGCTACCTC TCCCTGCAGCGTCCGGAAGGTGTGCTCGGCGTGATGCGGGGCGTCAAGGG CATGTTGGACCCCCGGGGGATCATGAATCCGTTCAAGGTGTTGCCGCCGG CATGAGCCAGTAGAACACGTGCTCGCACGTGGTTGGTTGCATCATGCATC ATGAAGAAATTCTCTCGTGAACGTGTTCCCTGTTTTCTGTCGCAGCATTG TTGTGCACGGGTAAAAATGTACTGTGCAGTTGTACTTACCTGTCGCTCTC ACCGGGAGGGGCCCGCTGCGAGGGGTCGTGTGCCGTGATCTACAGATGGT AGGGAAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7780:3808..5864+

>mRNA_E_fasciculatus_S2_contig7780.15945.1 ID=mRNA_E_fasciculatus_S2_contig7780.15945.1|Name=mRNA_E_fasciculatus_S2_contig7780.15945.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7780:3808..5864+ (Ectocarpus fasciculatus EfasUO2)
ATGGACAGGGAGGCGGTGGCGCTGACGCTGGAGAAGTGCCAAGGGGTGCG
GAGCCCCTTTCCGCCGCCGACCAACGGTGCCGACGATGATGGGGGTCATA
AGTACTACGTGCTGATCGAGACGTCCGGGAGCGATGCCGAGCACGACGCG
GAGAAAATGGAAGGGTTTCTTGAGGCGGCGATGGAGCTCGGCCCCGTGGT
GGATGGCGCGGTGGCACAAGACCTGAGCCAGCTGCAGGCGATGTGGTCCC
TGCGCGAGCACGCACCCGTGGCAGTCTCCCTGTCCGGGTACACCTACAAG
TACGACGTCTCGATCCCCGTCGGAGACTTCAAGGCCCTGGCCGACGAGAC
GCGCCGACGACTGAGAGGCCTGTTCCCGGAGGGAGGTGGGGCTACGGTGG
TGGCCTACGGCCACCTCGGGGACGGAAACTTGCACCTCAATGTCTGCGTT
CCGGCGGCCGCGGGAGGCGGCGACGGGGGCGCTGGGGAGCCGGCCGCAGC
AACAGGGCGCGCGGACGTGCTGGCGGCGCTGGAGCCCTTCGTGTTCGAGT
GGGTGGTCTCGAGGAGGGGCAGCATCAGCGCGGAGCACGGCGTGGGGCAG
CACAAGCGGGGCTACCTCTCCCTGCAGCGTCCGGAAGGTGTGCTCGGCGT
GATGCGGGGCGTCAAGGGCATGTTGGACCCCCGGGGGATCATGAATCCGT
TCAAGGTGTTGCCGCCGGCATGA
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