mRNA_E_fasciculatus_S2_contig7779.15942.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7779.15942.1
Unique NamemRNA_E_fasciculatus_S2_contig7779.15942.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7779.15942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.320e-24
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   67 MEFRASHVVGYWLTLIFDGAPIVSGSSVDVGKTWGYPGDLISTALVHAGMDWPKADVFDPHELAC 261
            MEFR SHV  YW+  IFDGA  VSGS VDVGKTWGYPG+LIS AL  A MDWP  DVFDP +L C
Sbjct:    1 MEFRTSHVANYWMARIFDGASNVSGS-VDVGKTWGYPGELISRALKKANMDWPGEDVFDPRQLTC 64
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7779.15942.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.320e-2470.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7779contigE_fasciculatus_S2_contig7779:2075..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_000040.1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.3730454-CDS-E_fasciculatus_S2_contig7779:2075..22481696842439.3730454-CDS-E_fasciculatus_S2_contig7779:2075..2248Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7779 2076..2248 -
1696842439.3828683-CDS-E_fasciculatus_S2_contig7779:2964..30921696842439.3828683-CDS-E_fasciculatus_S2_contig7779:2964..3092Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7779 2965..3092 -
1696842439.3921824-CDS-E_fasciculatus_S2_contig7779:3563..37301696842439.3921824-CDS-E_fasciculatus_S2_contig7779:3563..3730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7779 3564..3730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7779.15942.1prot_E_fasciculatus_S2_contig7779.15942.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7779 2076..3730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7779.15942.1

>prot_E_fasciculatus_S2_contig7779.15942.1 ID=prot_E_fasciculatus_S2_contig7779.15942.1|Name=mRNA_E_fasciculatus_S2_contig7779.15942.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
EQALSTLEQLLVENNIGETTGHMEFRASHVVGYWLTLIFDGAPIVSGSSV
DVGKTWGYPGDLISTALVHAGMDWPKADVFDPHELACRPSLRPPSPGPGV
TPEVQRERERQRHGGLVMDALNVALLQLSPSETSWYISTGQLRLVFLTIC
EMARNA
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mRNA from alignment at E_fasciculatus_S2_contig7779:2075..3730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7779.15942.1 ID=mRNA_E_fasciculatus_S2_contig7779.15942.1|Name=mRNA_E_fasciculatus_S2_contig7779.15942.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1656bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7779:2075..3730- (Ectocarpus fasciculatus EfasUO2)
GAACAGGCTTTGAGTACTTTGGAACAACTTCTCGTCGAAAACAACATTGG
CGAAACTACAGGCCACATGGAGTTCCGGGCTTCTCACGTGGTGGGCTACT
GGTTGACGTTGATTTTCGATGGTGCTCCCATCGTCAGCGGCTCCTCCGTG
GATGTTGGGAAAACATGGTGAGCAAAACGCTCGTGCTGATCCTTTGCCTT
TGATCGTGCCTAAGATGGGTTAATGTTTCCTCTCTTCTGTTGTATGTGTT
TTCACTCACGTAAGAAACGCGTGCGCCCGTACTCGCGAAGAAGCGGTGGC
GCAGGTCGGGGTATACAACGGACCTCCAATCCAAGTGGGAAGGAAGGCGA
GTCTAGCTGTTTATTGCTCGTAGCTTCCCAGGCCTTTAGAATGGACGGTA
AACGCTGCAGATACTAAGAAAATGCAGTACCTCGAAATCATATCACCATT
CCTTGTGCCTTGCGTGGACACTCACCCGACACGCGCGTTGTTCGTGCGCT
CTACCCTCGCAAGGTCAGCAGTAACCATCATGCCAGTCTGTTCTTATGAT
TTTCCACCTCTCATTGTTTGAAATTGCGGCATGAAGGCCGAACAACAATA
ATCTGACTGGTTCAGTTGCCCTTTCGTGGCGTGAACAGGGGGTATCCCGG
GGACCTCATCTCCACAGCGTTGGTCCATGCGGGGATGGACTGGCCGAAGG
CGGACGTGTTCGACCCACATGAGCTTGCCTGCCGTCCATCGCTTCGTCCT
CCTTCTCCTGGACCAGGTGAGACGTTCAATACTGTTTTGTATTGGTGGTG
TTTATTCCTTTGGATAGAAGTATTCCATTAAGGGTGTTTGTCTGAAGTTT
CGACGACCGTACGTCTACGACGGAACCGTATAACGGCTCGGGGTGTACGC
TTCATCTTGCTTCGCGTATGGCGGGCTACCCTTGTATTTTTGATGTCCCA
CCTAGCGGGACGAGAGAGGCGTGAGTTTTATGTACGGTACACATAACTAT
CATTTCGTCGGGAAAGGGTACTGCGTGACTCGCCCTTTCCGATCATACTT
TCGGCGGTGGCTTTTCATCGATATGCCCAAATATCGCCGCCTATTACGCT
TTCTTTTTCCTTCAGCACGTAAAATGTGCGCCAGCGACGTTGGGCGAACC
ATCAATGATTACCCGTTCCGTGTACAGCCAGCCCTAACATATATCGCTGC
CCTGCTTGAGATCACACAACCCCCCAACCTACACCAAGCCCCAGGTTTTG
TTTGACTAGAGTCACTAGTCGGCAACGAAAGTGTACGCCTTGTAAAAGCT
CGTACATTCTCCGCTACATCATCCTCGTTGGAGCATGCCTGCGTGTGTCG
TCTCCAGAGTTTATTTATTCCATCTGGGTAGTACGTAACATCACGTAGAA
CGCTGCCCGCTTACATATTCTCTCTCTCTCTCTGTCTCTCTTGTCCTCTT
CCCCTACCCCTACCCTGCCGCTGAACGCTAAGGAGTTACCCCTGAGGTAC
AGCGCGAACGCGAACGACAGAGGCACGGCGGTCTCGTCATGGACGCCCTG
AACGTCGCCCTCCTCCAGCTATCGCCATCCGAGACCTCGTGGTACATCTC
GACCGGGCAGCTGCGACTCGTGTTCTTGACCATTTGCGAAATGGCCAGGA
ACGCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7779:2075..3730-

>mRNA_E_fasciculatus_S2_contig7779.15942.1 ID=mRNA_E_fasciculatus_S2_contig7779.15942.1|Name=mRNA_E_fasciculatus_S2_contig7779.15942.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7779:2075..3730- (Ectocarpus fasciculatus EfasUO2)
GAACAGGCTTTGAGTACTTTGGAACAACTTCTCGTCGAAAACAACATTGG
CGAAACTACAGGCCACATGGAGTTCCGGGCTTCTCACGTGGTGGGCTACT
GGTTGACGTTGATTTTCGATGGTGCTCCCATCGTCAGCGGCTCCTCCGTG
GATGTTGGGAAAACATGGGGGTATCCCGGGGACCTCATCTCCACAGCGTT
GGTCCATGCGGGGATGGACTGGCCGAAGGCGGACGTGTTCGACCCACATG
AGCTTGCCTGCCGTCCATCGCTTCGTCCTCCTTCTCCTGGACCAGGAGTT
ACCCCTGAGGTACAGCGCGAACGCGAACGACAGAGGCACGGCGGTCTCGT
CATGGACGCCCTGAACGTCGCCCTCCTCCAGCTATCGCCATCCGAGACCT
CGTGGTACATCTCGACCGGGCAGCTGCGACTCGTGTTCTTGACCATTTGC
GAAATGGCCAGGAACGCC
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