mRNA_E_fasciculatus_S2_contig7777.15941.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7777.15941.1
Unique NamemRNA_E_fasciculatus_S2_contig7777.15941.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7777.15941.1 vs.
Match: Store-operated (calcium entry-associated regulatory factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTI2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.300e-20
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  121 MLVPE-------LLASIQSLTFTRGRLTTSRRTETISQLICNGGGGSAGCPKDPR*QFQTALRKNQG 300
            ML+PE       LLA +++LTFTRGRLTTSRRT  I+QLIC+GGGGSAGCPKDPR QFQTAL KNQG
Sbjct:    1 MLIPEQGAPEKVLLAGVEALTFTRGRLTTSRRTRPIAQLICDGGGGSAGCPKDPRWQFQTALCKNQG 67
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7777.15941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Store-operated1.300e-2073.13calcium entry-associated regulatory factor n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7777contigE_fasciculatus_S2_contig7777:176..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score78.2
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7FTI2
Preferred nameTMEM66
Model size430
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Exons2
EggNOG free text desc.Store-operated calcium entry-associated regulatory factor
EggNOG OGs28KQW@1,2QT6Y@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.3011186-UTR-E_fasciculatus_S2_contig7777:175..3381696842439.3011186-UTR-E_fasciculatus_S2_contig7777:175..338Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7777 176..338 -
1696842439.3403683-UTR-E_fasciculatus_S2_contig7777:1732..18521696842439.3403683-UTR-E_fasciculatus_S2_contig7777:1732..1852Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7777 1733..1852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.3143957-CDS-E_fasciculatus_S2_contig7777:338..4171696842439.3143957-CDS-E_fasciculatus_S2_contig7777:338..417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7777 339..417 -
1696842439.3278425-CDS-E_fasciculatus_S2_contig7777:1664..17321696842439.3278425-CDS-E_fasciculatus_S2_contig7777:1664..1732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7777 1665..1732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7777.15941.1prot_E_fasciculatus_S2_contig7777.15941.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7777 339..1732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7777.15941.1

>prot_E_fasciculatus_S2_contig7777.15941.1 ID=prot_E_fasciculatus_S2_contig7777.15941.1|Name=mRNA_E_fasciculatus_S2_contig7777.15941.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=49bp
MLVPELLASIQSLTFTRGRLTTSRRTETISQLICNGGGGSAGCPKDPR*
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mRNA from alignment at E_fasciculatus_S2_contig7777:176..1852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7777.15941.1 ID=mRNA_E_fasciculatus_S2_contig7777.15941.1|Name=mRNA_E_fasciculatus_S2_contig7777.15941.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1677bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7777:176..1852- (Ectocarpus fasciculatus EfasUO2)
ATCGGTTGCGTGTTTTGTTGAGAATTCGCGACTTGGAGGAGGACAGCGGC
AATCAGAAACGCGACGTTCGGGAGGAAGCAATAGTCAGGCCGGACATGTA
GCATCAGCAGTGAGACAGCGATGCTTGTCCCGGAGCTTCTGGCCAGCATT
CAGTCCCTCACGTTCACTCGTGGGCGCCTGACAACGAGGTGGGCAATGGG
GTGTGAGTAGGATAGACTACATAGACTACAGCGTGTGCCTGGTGACTGCT
GTTGTTGTGTTGTGATGCTGCACGCAAGGCACAGCAGAGGAGACTTAGAC
TTGCACGACGGGTCAGTGCTCCCTGTGTCGCCACCGCCGTCCGTGAGAGA
AATGCAGGTGTTTACCTACAGTAGGCGTGCCTTCCTGTAATTGTGCCGCC
GGAATTCCCAAACAGCAGTAGTCGCATGGGTTGAGTTGAGCACTGGGAAT
CTGACTGACTTTCTTTACGGGCCGATTTTCGGCAAATGACTGCCCGGTCT
TACTCTTTACCTCTACTGCTGTACACATGTACTCAAAGACTGCTGTACAT
TGCAGAGGTCCCTCTTCGCGACAGCGCGACCAATATCATTTTGTGTACAT
GACAGGTTCGGGGGCAATCTATTGTAGCCGACTATGACAGACGACTTCAA
GGCGATGAGTTGCCACCTGCTTCTGCTGTGTCGACGTGTTTTTTCGAGGC
TACAACCACTTGCGGAAATACGTGTGTATTTAGCATCTTGACTATTTAGT
CTACAGCAGTAGGGGCCGCTGCCGCTCGTGTACATGTACTTCATAACTAA
AAGTGGTATGCTACATGTCCCAGTGCACATTTGTGTGTGGTTTCGGGAGT
GGCCGCATGAACCCGGTGTACGTGGAACACGGCATCGATTGGCAACAAGA
GTCGACACCGCCCTTCTCACGCCAACTTCCACCAGCGAACGTGGTTGGTT
TGCACATTTGTGCACAAAAAATGATGGGTGTATGCACAGGCACAGAGTTG
GTACAATACAATACCGCTGCTGGCGTTGCGGGAGAATAGGAAATGCGTCA
GCAGCCTCGAGCTCGTTCTGCTCTGTGCCGGTTGGCCAGGAACTTTAACT
TTTAGCCAGCCAGCGGCGTGTCTTGCTGCAGGGCGATTGTCGCATCAAGA
AAAGGGCAACACATACCACCGGTTCGCAACATCGGCCGCCGTCCTCGACC
TCTGCCGCCCCGTCCATTGGAGGACTGGGGGTTCCTCACAGGCTGTTGTT
TAGAAAGAACGCCCCTAGCGTTTCCCCCAAAAGTGTACAGCGATTTACTT
TCATTCGCCGTCGGCACGGCCTCCACTGTCGATATAAATTCGAGAAACAA
GTTTTGGCCCATACTGTACGTGTGTAGCGATACTCTTTGTTGAATTTTCA
AATCGACCTTCACCATGTGCGTTTTTTTTTTGCAGCCGGAGGACCGAAAC
AATCTCTCAGCTGATTTGCAACGGGGGCGGCGGGAGCGCGGGGTGCCCGA
AGGACCCCCGCTGACAGTTCCAGACCGCCTTGCGCAAGAACCAAGGGGGT
AAAAGCTAGAACACGATGAAGTATGCATTACCCGAGGCATCAGTTGCACC
TGTTGCAACGAGAGACATTGCCGCAGGCTTCCCTCCTGGTAGATTGGGGG
GGCGGTGCGCTGTGGAGCCCGCCGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7777:176..1852-

>mRNA_E_fasciculatus_S2_contig7777.15941.1 ID=mRNA_E_fasciculatus_S2_contig7777.15941.1|Name=mRNA_E_fasciculatus_S2_contig7777.15941.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7777:176..1852- (Ectocarpus fasciculatus EfasUO2)
ATGCTTGTCCCGGAGCTTCTGGCCAGCATTCAGTCCCTCACGTTCACTCG
TGGGCGCCTGACAACGAGCCGGAGGACCGAAACAATCTCTCAGCTGATTT
GCAACGGGGGCGGCGGGAGCGCGGGGTGCCCGAAGGACCCCCGCTGA
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