mRNA_E_fasciculatus_S2_contig7776.15940.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7776.15940.1
Unique NamemRNA_E_fasciculatus_S2_contig7776.15940.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS59_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 6.640e-195
Identity = 284/306 (92.81%), Postives = 287/306 (93.79%), Query Frame = 1 
Query:   52 LGAMRPA----------TPPRG--LARSAVVGSSSTDAFAWTASPCRALSGLAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLK 933
            +GAMRPA          TPPR   LARS  +GSSSTDAFAWTASPCRALSGLAVLQVSCGSRHTLATV+GGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGE DAALGPVSWVSAGGIHSAAVLE GRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPR SATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSN ALLK
Sbjct:    1 MGAMRPAPGSGRDSRGSTPPRSGNLARSPAMGSSSTDAFAWTASPCRALSGLAVLQVSCGSRHTLATVEGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGEGDAALGPVSWVSAGGIHSAAVLEGGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRVSATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNAALLK 306
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JED5_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 4.650e-67
Identity = 111/136 (81.62%), Postives = 112/136 (82.35%), Query Frame = 1 
Query:  598 METAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRT------------------------ESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLK 933
            METAPKTELLAKTVVCGGMHTAALT+EGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRT                        ESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLK
Sbjct:    1 METAPKTELLAKTVVCGGMHTAALTSEGVVYCWGRADSGQLGIGAAWVHETSSGVMGVEWPRRVRGLLEGRRTVRQRLDDVVVPRLEALVSDNVPSEESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLK 136
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BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GJ83_PHYRM)

HSP 1 Score: 182 bits (463), Expect = 2.130e-52
Identity = 109/251 (43.43%), Postives = 138/251 (54.98%), Query Frame = 1 
Query:  160 LSGLAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSS-GVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLG 909
            L+G  ++ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I      E D  +  V ++S GG HSAAV   G ++ WG S +GQLGL P       + LP K  + E  +                                 E + K + CGG HTAALT+ G VY WGR DSGQLGIGAAW+ +T   G++GV  PR + G   G +   +ACG FH+AAVT +G  Y WGKED+GMLG
Sbjct:   50 LAGEEIIAVSCGSRHTMALTAAGTVYSWGWGSMGQLGHGDLKSINEPQKIAFF---ELDGLV--VDYISCGGCHSAAVTNDGTLYMWGESHWGQLGL-PKEFEAAHESLPVKCPMPEGNA--------------------------------NEKILK-ISCGGTHTAALTSLGRVYVWGRGDSGQLGIGAAWLKDTEDEGLLGVSRPRLLEGF-NGEKVVQVACGAFHSAAVTEEGHVYIWGKEDYGMLG 260
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CET3_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 1.090e-51
Identity = 109/264 (41.29%), Postives = 136/264 (51.52%), Query Frame = 1 
Query:  157 ALSGLAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVH---ETSSGVMGVEWPRRVR-GLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            AL GL +  +SCGSRH+LA    G+ +SWGWG  GQLGHG+  S+  P  I        DAA   +++VSAGG HS AV   GRVF WG + +GQLGL P  T                                H +M  +  VL     P T+     + CGG HTAAL+  G VY WGR D+GQLG+G  WVH   E + G  G   P R+     +  R   ++CG FHTAAVT  G  YTWGKED+GMLG  +   + V
Sbjct:   47 ALRGLDITAISCGSRHSLALASTGDVFSWGWGQMGQLGHGNHKSLNLPTPIVYF-----DAANIKIAYVSAGGCHSGAVSTDGRVFMWGEAHWGQLGLSPDYTDV------------------------------HQAMPAECKVLP----PNTDEKIVAISCGGTHTAALSNHGYVYTWGRRDNGQLGLGRDWVHMEPEAADGTCGTSIPTRIDPAQFDNERVIQVSCGAFHTAAVTESGHVYTWGKEDYGMLGVGHTPDIHV 271
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BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6X4_GLOUD)

HSP 1 Score: 183 bits (464), Expect = 5.610e-51
Identity = 109/257 (42.41%), Postives = 138/257 (53.70%), Query Frame = 1 
Query:  169 LAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETS-SGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            L +  VSCGSRHT+     GE YSWGWG+ GQLGHGD  S   PR IE   T         V ++S GG HSAAV + G V+TWG + +GQLGL P   +   Q LP K  + +  S                                 E + K + CGG H AALT +G VY WGR D+GQLGIG AW+H++   G++GV  P RV G  +  +   +ACG FH+AAVT  G  Y WGKED+GMLG    + ++V
Sbjct:   53 LDIAAVSCGSRHTMVLTTQGEVYSWGWGSMGQLGHGDLKSSNFPRKIEFFATQGL-----VVEYISCGGCHSAAVTKDGAVYTWGEAHWGQLGL-PKEFSDLHQSLPAKCPILQDGSE--------------------------------EKVVK-ISCGGAHMAALTDKGHVYMWGRCDNGQLGIGQAWLHDSDCEGLLGVSHPHRVEGFGD-EKVVQVACGAFHSAAVTEAGSVYIWGKEDYGMLGVGQTSDVQV 269
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PSP6_PHYPN)

HSP 1 Score: 180 bits (456), Expect = 6.560e-51
Identity = 107/256 (41.80%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:  175 VLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEAL-KTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSS-GVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            V+ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I+   K G        V ++S GG HSAAV   G ++ WG S +GQLGL P       + LP K  + E E+                                 E++ K V CGG HTAALT+ G VY WGR DSGQLGIG+AW+ +  +  +MG   P  V+G  +G +   +ACG FH+AAVT  G  Y WGKED+GMLG    +  ++
Sbjct:   76 VVAVSCGSRHTMALTASGAVYSWGWGSMGQLGHGDLKSINEPQKIDFFEKEGHM------VDYISCGGCHSAAVTNDGTLYMWGESHWGQLGL-PKEYDAAHESLPVKCPMPEGEAD--------------------------------EVIVK-VSCGGTHTAALTSLGHVYVWGRGDSGQLGIGSAWLKDPENESLMGASRPHLVKGF-DGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQSSDQQI 290
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BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PSP2_PHYPN)

HSP 1 Score: 180 bits (456), Expect = 5.880e-50
Identity = 107/256 (41.80%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:  175 VLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEAL-KTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSS-GVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            V+ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I+   K G        V ++S GG HSAAV   G ++ WG S +GQLGL P       + LP K  + E E+                                 E++ K V CGG HTAALT+ G VY WGR DSGQLGIG+AW+ +  +  +MG   P  V+G  +G +   +ACG FH+AAVT  G  Y WGKED+GMLG    +  ++
Sbjct:   76 VVAVSCGSRHTMALTASGAVYSWGWGSMGQLGHGDLKSINEPQKIDFFEKEGHM------VDYISCGGCHSAAVTNDGTLYMWGESHWGQLGL-PKEYDAAHESLPVKCPMPEGEAD--------------------------------EVIVK-VSCGGTHTAALTSLGHVYVWGRGDSGQLGIGSAWLKDPENESLMGASRPHLVKGF-DGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQSSDQQI 290
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: E3 (ubiquitin-protein ligase HERC2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C445_PHYNI)

HSP 1 Score: 180 bits (456), Expect = 8.450e-49
Identity = 107/256 (41.80%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:  175 VLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEAL-KTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSS-GVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            V+ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I+   K G        V ++S GG HSAAV   G ++ WG S +GQLGL P       + LP K  + E E+                                 E++ K V CGG HTAALT+ G VY WGR DSGQLGIG+AW+ +  +  +MG   P  V+G  +G +   +ACG FH+AAVT  G  Y WGKED+GMLG    +  ++
Sbjct:  170 VVAVSCGSRHTMALTASGAVYSWGWGSMGQLGHGDLKSINEPQKIDFFEKEGHM------VDYISCGGCHSAAVTNDGTLYMWGESHWGQLGL-PKEYDAAHESLPVKCPMPEGEAD--------------------------------EVIVK-VSCGGTHTAALTSLGHVYVWGRGDSGQLGIGSAWLKDPENESLMGASRPHLVKGF-DGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQSSDQQI 384
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DLB9_PHYNI)

HSP 1 Score: 180 bits (456), Expect = 1.690e-48
Identity = 107/256 (41.80%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:  175 VLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEAL-KTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETSS-GVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLGCSNEALLKV 936
            V+ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I+   K G        V ++S GG HSAAV   G ++ WG S +GQLGL P       + LP K  + E E+                                 E++ K V CGG HTAALT+ G VY WGR DSGQLGIG+AW+ +  +  +MG   P  V+G  +G +   +ACG FH+AAVT  G  Y WGKED+GMLG    +  ++
Sbjct:  301 VVAVSCGSRHTMALTASGAVYSWGWGSMGQLGHGDLKSINEPQKIDFFEKEGHM------VDYISCGGCHSAAVTNDGTLYMWGESHWGQLGL-PKEYDAAHESLPVKCPMPEGEAD--------------------------------EVIVK-VSCGGTHTAALTSLGHVYVWGRGDSGQLGIGSAWLKDPENESLMGASRPHLVKGF-DGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQSSDQQI 515
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YIM6_PHYSP)

HSP 1 Score: 176 bits (446), Expect = 2.490e-48
Identity = 108/251 (43.03%), Postives = 133/251 (52.99%), Query Frame = 1 
Query:  160 LSGLAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCPRVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGLGPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAMETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHETS-SGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFGMLG 909
            L G  ++ VSCGSRHT+A    G  YSWGWG+ GQLGHGD  S+  P+ I   +          V +VS GG HSAAV   G ++ WG + +GQLGL P       +  P K  L E                           +A E+  K       V CGG HTAALT  G VY WGR DSGQLGIG+AW+ +T  +G++GV  P  V G   G +   +ACG FH+AAVT  G  Y WGKED+GMLG
Sbjct:   50 LLGEEIVAVSCGSRHTMALTASGAVYSWGWGSMGQLGHGDLKSINVPQKIAFFEQEGLK-----VDYVSCGGCHSAAVTNDGTLYMWGETHWGQLGL-PKEFEAAHESFPVKCPLLEG--------------------------VADESVVK-------VSCGGTHTAALTNLGRVYVWGRGDSGQLGIGSAWLKDTDDNGLLGVSRPHLVEGF-NGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLG 260
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7776.15940.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.640e-19592.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.650e-6781.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.130e-5243.43protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GJ... [more]
Uncharacterized1.090e-5141.29protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Uncharacterized5.610e-5142.41protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized6.560e-5141.80protein n=5 Tax=Phytophthora parasitica TaxID=4792... [more]
Uncharacterized5.880e-5041.80protein n=12 Tax=Phytophthora parasitica TaxID=479... [more]
E38.450e-4941.80ubiquitin-protein ligase HERC2 n=7 Tax=Phytophthor... [more]
Uncharacterized1.690e-4841.80protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Uncharacterized2.490e-4843.03protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7776contigE_fasciculatus_S2_contig7776:510..6458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score559.3
Seed ortholog evalue1.1e-156
Seed eggNOG ortholog2880.D7FS59
Model size945
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-01_000660.1
Cds size945
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7776.15940.1prot_E_fasciculatus_S2_contig7776.15940.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7776 510..6458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.2093742-CDS-E_fasciculatus_S2_contig7776:509..6381696842439.2093742-CDS-E_fasciculatus_S2_contig7776:509..638Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 510..638 -
1696842439.2205474-CDS-E_fasciculatus_S2_contig7776:1045..11831696842439.2205474-CDS-E_fasciculatus_S2_contig7776:1045..1183Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 1046..1183 -
1696842439.230361-CDS-E_fasciculatus_S2_contig7776:2598..26791696842439.230361-CDS-E_fasciculatus_S2_contig7776:2598..2679Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 2599..2679 -
1696842439.240882-CDS-E_fasciculatus_S2_contig7776:3797..39531696842439.240882-CDS-E_fasciculatus_S2_contig7776:3797..3953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 3798..3953 -
1696842439.250547-CDS-E_fasciculatus_S2_contig7776:4567..47441696842439.250547-CDS-E_fasciculatus_S2_contig7776:4567..4744Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 4568..4744 -
1696842439.2597837-CDS-E_fasciculatus_S2_contig7776:5511..56201696842439.2597837-CDS-E_fasciculatus_S2_contig7776:5511..5620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 5512..5620 -
1696842439.2704978-CDS-E_fasciculatus_S2_contig7776:6303..64581696842439.2704978-CDS-E_fasciculatus_S2_contig7776:6303..6458Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7776 6304..6458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7776.15940.1

>prot_E_fasciculatus_S2_contig7776.15940.1 ID=prot_E_fasciculatus_S2_contig7776.15940.1|Name=mRNA_E_fasciculatus_S2_contig7776.15940.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=315bp
DRSHQVLTPLSPSTPTRLGAMRPATPPRGLARSAVVGSSSTDAFAWTASP
CRALSGLAVLQVSCGSRHTLATVKGGEAYSWGWGACGQLGHGDDHSVGCP
RVIEALKTGESDAALGPVSWVSAGGIHSAAVLECGRVFTWGGSSYGQLGL
GPAVTTQGMQPLPGKVMLSETESPLGSPRASATGLTRHSSMTQKAAVLAM
ETAPKTELLAKTVVCGGMHTAALTAEGVVYCWGRADSGQLGIGAAWVHET
SSGVMGVEWPRRVRGLLEGRRTESIACGGFHTAAVTTDGECYTWGKEDFG
MLGCSNEALLKVKG*
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mRNA from alignment at E_fasciculatus_S2_contig7776:510..6458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7776.15940.1 ID=mRNA_E_fasciculatus_S2_contig7776.15940.1|Name=mRNA_E_fasciculatus_S2_contig7776.15940.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5949bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7776:510..6458- (Ectocarpus fasciculatus EfasUO2)
GACCGTTCCCACCAGGTGTTAACGCCACTGTCCCCTTCAACACCCACGAG
GCTGGGCGCCATGCGACCGGCCACGCCTCCACGGGGCTTGGCCAGGTCCG
CCGTTGTGGGCAGTAGTTCTACGGACGCCTTCGCCTGGACGGCCTCGCCT
TGCAGGTGCACACGGTATTTATTTGTCGTGGATCAACGTGCTTTTTTTTG
TGTTTTTTTTTTTTCCAGATTCGTACGTGTGGGATCGCGATTCACGTGTT
CGTTTTTTTCGTATTTTACCAGACTGTTGGATCGTGGTTCATGTTTTCGT
CTATTTTTTCCCAGGCTGGTTTGTCTCGGATCGTGGCCAGGTCGTGGTTG
TGGCGTGTTTCGTAAAAAGAAACGTCGAGTCGCTACCTTTGCCTTTAACC
CCTAGATCTCGTGTCTCAGGAGACGACGGGCGACTCGTGATAATAATTCG
TTGTATTTATATCCTCATGCTGAAGCGAACGAATGTGTTTTTATCCTCAT
GCTGAAGCGAACGAACCGGTTCTTAGCCAACAGCTGCCTCCAGGGTGTCC
GCAAACTAACCTCTGTAGCGTCAACCAACACCCCACCGACCGTGCCACTC
CAAGCATCTTCTTCCTGATCGCCTGCCTCCGCGTGTGCATGCATCCCCCC
TCTACCCTCACGCAAGCATGACGATGACCAGCTTCTGGTTCGTCCTTGTG
AAACGTAGCCTGGGCCGGCGAAAACCCGACATGTCGCTCCGTCCAGGTAT
TGTAGGGATGCGAGGTCAACGATCTACCAACTACGGCATGCGTATACATG
AGTACTCCCCCCCCACGTATCACTTTCCCCCCTTTCAGAGCCCTCTCGGG
CCTGGCGGTATTGCAAGTTTCCTGCGGGTCGAGACACACCCTGGCGACGG
TCAAGGGGGGCGAGGCGTACAGCTGGGGATGGGGGGCCTGCGGCCAGGTG
TGACAGAGTGGGCGGGGTACTCGGGAGTTGCTCTCGCGCGTTACAAGCGT
TTTCTTCGGCCAACATCTTAAGTCTTAAGTGAAAACTTTCACAAAGAAGA
GGTGGCACACGAGAGCTCATTTTCTGCTCCCCGGAGCAGTCATTCTAAGA
CCATTGGCCAGGCCCACGTTAGGTGTCAGTATGTAACATCGTTTTGGGCA
TGAGCGCGTGTGCGGGCTCATTGCCGTGTACGACTGTCTTTCCCATTAAA
CAAGAATGGCAACAACCACGCGCAAGCGCCAAACAGGGAGGCCAGGGGGC
ACGATGGTGAATTCATGTGTGACCTACTTTTAATCCTACCCTCTCATTCT
TGAGACACAACAGCAGCAGCAGCACTGCTGACTCGATTTCTCAATCATGG
GAAGGCCTTGACCGTGCTGCATGAAGGGTGCTGGGGTGAACTGCGATGAA
GTTAGTATTTCCTTCGTGGTACGTGACTTATGACTGACACACCAATGTTG
TTATTCCATCCTTACCACCGCCGTACGGAATTTTTTTCTGACTTTCGTAG
CGTCTTTTTCGTGCCCCCCTCCGCCACCTCCACCCCCTCCGTAACCGTTA
CCAAACCCGTCCAGGACCCCCGTCTGACCCAGCGACCCAGGAAACCCAAC
CTAACCCAACCCAACCTTTATTTCTATCGTTCCCCCTGACGGTTTTTGTC
TCATTCCGCCATTTTCTCGGCTGTCCGAACCGGCACTGGGACACCGCACT
AAAACCCACCTAAGCTGGGTCATGGTGACGACCACAGCGTCGGCTGTCCT
AGAGTGATTGAGGCCCTGAAGACGGGAGAGAGTGATGCGGCCCTCGGACC
CGTCTCCTGGGTTTCCGCAGGAGGCATACATTCGGCCGCTGTGTTGGAGT
GTGGGCGCGTTTTCACGTGGGGGGGAAGCAGCTACGGTCAGGTCTGCAAT
GTGGAAGTTGAAGATATTAAGTTTGTGCCTGCTCCATCGCTCCTCTGTGA
TAGATCGCATTCACGCATCAAGCCGTACACGTAACACCAAACGGAGGATT
TTCGCCTGAGAGTTCCCGCGACTTTGATGTGCGACGTCTCTTCATCATTA
CAGCAGCAGTAGCATCGACTGGAGCCTTGCCAGCCCACCAGTGGCATTCG
CTTTACTTAGTGCAGCATCAGTTGTTGGAAACGAATCTCCGATGCACACG
ACGGCGGTCCTCCTTCTCGACCAGGCCAGAAGTTTTGATGGTAAGGTCCA
CAGACTGAAGGACGTCAGCATTGATTGCACACCCTTCTCCTGCCCGCCAC
CCCCCCCCCCAACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCC
CCCCCACCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCTTCCCGCCCACG
CCAGATTTTTTTTTGTTTAGGTTCCCCAGTCTAAGGACCTCAGCTTTTGT
TTCCCCCCCCTCCCCCTCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCC
CCCCCCTCCTTGCATGCATGCCTGCGACAACCCCGTGCCCCCCTCGTCGC
CGCAGCTCGGGCTGGGCCCCGCAGTAACTACCCAGGGGATGCAGCCGTTG
CCAGGGAAAGTTATGCTTTCGGAGACCGAAAGTCCTCTTGGCTCCCCTCG
CGCTAGCGCCACGGGGCTTACGAGGCACTCGAGCATGACCCAGAAAGCGG
CGGTTTTGGCGGTGAGAGAAAAGAACCAAAGAAGAAGAGGCGTTGTTGTT
GTTGCTACGTTTTTGTGATTGCTGCGTGCCTGCTGAGGTCGTCGATGTTA
GTAGTTGCGACGCCTTTGTGATTGTTGTCTGTCTGCTGAGGTCGTAGATG
TGCATGGTTGCTATGTCTCGTGACTGCTGTGTGTCTGCTCGAGGTCGTAG
ATGGTGTTGGCATCTACTACTGTTATTCTCCACGGGCAAGGCAAGTCAGC
ACAATGATTCAGGTCAGCTGTTCTGATACATGCTCTGTGTTTGTGTGCCG
GATTGCGCACTCCAAAGCTTGGCAAGATAGAAAGCCTGACTCAAGGTCGT
CGTCGATGTATGGGGTCGGACTCTCTTACCTTCTCCTTCGATGTGGACAC
AGCCTCTGAGGGACAGTATACAGAGAGACAACGAGATGGAGACAGAGATA
AAGAAGTTGTCGGGGAGAAGAAGAGAAAGGGGGGGGGGGGAGGCAGAGAC
CAAACGTTGTAGCGGAGGCTGCCGTTTTCGTGAAATTTTGCTACATATGT
TTCTGCAGAAAGGAAGATAGGAATGAACAGAGGGATAAAATGATGCAGAG
AGGAGAAATAAGTGACAGGAATGGAGAGACTAGAAAGAGGCAGAGAAGCC
GACAGGTAGAAAAAGAAGAGAGTGGGGAAGGGGGAGAGGCGGGGGGGGTA
CTCATAGTCGTGCATGCCGTAGTCGTTAGACCATGGACCTCGCATCCCTA
CAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGATCGGGATGGGGGGG
GGGAGGCAGACAAGCGATTGAACGAAGGTTAAGGTTTTAGTTGTAATGAA
ATATTGCTAAGTTTATCCCTGTTGGATAGACAACGCATTGGCCAAAGTCC
ATCCAGCTGTGTTGAGAAGGAGATTTAAAATTTGCTGTTCTGGGATGACT
GGTGCTATCCTACCTGAAGGTTGTTGCCTTTTCTTAAGCTTGTTCGACTT
CTCCTACCCGACGGTACATGCGTTTCGGGTCTATTTTTACGCGGACTCAC
GTTACCTTACCTTCCGCGCCGCCATATTTTGTTTTTTCCGTGACATGACG
CGTCGTGTCGTTGCCCTTCGCTGCCTCAGATGGAGACAGCCCCGAAGACA
GAGTTGCTGGCCAAAACAGTGGTCTGCGGGGGAATGCACACGGCCGCTCT
TACCGCCGAGGTATCTATGAAACTTGTCTAATCACGATCTCGGGACGAAT
TTCTTCTCCTTGACCTTGTGCTGCTTGTACGTCTGCTTCTGCAGAATGCA
ACACCCCTCAAGATTAACCTTGGAGGGAGCTAAGCAGTGCAGGCTCGAAG
CGAGATAACTCTTTCGACCTTGAATGAAAGAACTCGTGGTTAGTAAAGGT
TAAGAATCCTGCACTAACACCTATATTGTCTAGTCGGTGTTGAGTTGCCC
TACTGAAGAAACAAGAAGATTAGCCTCGGGTTAAGAAAATGTTTCTTTGC
AGTGGCCGTGCTGTGCTGTTCTTCCTGTAGTTCAGCTCTCGTTTCATCCC
TGACCACGCCTCTAACCGCGGAGCATAGTTGTTGTTTCGCCCTCCTCTTT
TTCGTCTTGTCCATGGAGACGTTCGCAGCGCCTGCAGGACACGTGACACA
GCATGGTGTTCACCAGAGTACTTATCTCTACCCTCTCTAGAAAGAACGAC
TTGTACCGCCTTATTGTCTCCCAGGATCGATGTTTTCCCGGTCTATCCTA
GGAAGTAAGTGTACTCCTATGCTATTTAGCGCATCCTCTTTTCGCGTCCA
GGAAGCCGAGCTTGTGCGGTCCTGTGTGCTGACAACTACTCCATGCCTTT
GTGTTTGCTAGCATCGCCCGTGTTTTCCGGTTGACCAATAAAAATACACG
AGCCTCGTGGGGAACAAAATGTCAGTCTGGAAAGCCCGTGGACCAAAACG
CACTCGCGTAGATCCCGCGGGGGGCGGGCGCAGCACATGCTTTAGCATTC
CGGTGCATACGCTTTTATTTCCTTTTTTGAGGCGCACCGTAAGGCGTCGG
CTGCGAACAGGTTCCCGCCGCCGTCCCCGCCGCCGTTAAGCCTATCGCCT
GACGTCTGCGGTCCATACGCGAGGACCCCTGACGTCAGGCGATAGGCTAA
CGGCGGCGGGGACGGCGGCGGGAACCTGTTCGCAGCCGACGCCTTACGGT
GCGCCTCAAATGCGGAAATGGAAGCGTATGCGCCGGAACGCTAAAGAATG
TGCGGCGCCCCCCCCCCCCGCGGGAACTACGTGAACGCGTTTTGGTCCAC
GGGCTCCCCAGACTGACGCTCGGGACTTCCAGGAGGCCGTCGAGAACGAG
CGACCCAGCATTCGGGTTCGAAACGCTTGTAAAACAATGTAAATATCACA
ACCGCTTCCTGTGACAGTCGCTCCTCGGAGCGATGTTGCTAGCATAGTCG
ATTTCCTGCAGTTGATCGTGATCGTTCCATATCCAATTTGCCTTCCATGG
TGTGTGGAATGACGCCATCGAGAAAAGCATGTTGACAGCGGAACAACCAC
AGAACAATGACAAGCACATCATCACCGTCTACGGTAGGTACACCCGTCTT
CCCTTCCCTGTCTATACTGCTTTAGGGAGTTGTATACTGCTGGGGGCGTG
CAGACAGCGGGCAGCTGGGGATCGGCGCCGCATGGGTCCACGAGACTTCG
TCCGGGGTGATGGGCGTCGAATGGCCGAGGAGGGTTCGCGGGTTGCTCGA
AGGCCGCCGCACGGTGAGACGTCGCCTTGATGACTTGATGAAGCTGTTGT
CCCGCGTTTGATAGCCTTCAGTAGCGACAGCGTGGATGGTGAGGTTTGAG
GTTTGTGTCTTGTGAAGACGTCACAAAAATCGCGGAGGCAAAACTACTAG
ATTACGGTACCTGGGGAAAAATGGCGATTGAGCGTTGAGTATGTACTTTT
TGTTTTTTGTTTCGCGTGATTTTTTCAAGACGGTTCGTGGTGCGGACCGC
TCGAGGGCAGTCAGGAGAGCTTTGACGTGTGTAGGTTATTGTTCTGTTGT
TGTTGTTGTTGTTGTTGTTATCGAACGTGGTAGTGGGTGCTGTTGTTGCT
GTGCATGACATACAACGACTAGTACCCCCCCTCCCGACCCCCCACGGCAA
TCATTTTCCCCGAATAATAGGAATCGATTGCGTGCGGCGGTTTCCACACG
GCGGCGGTGACGACGGACGGGGAGTGCTACACGTGGGGCAAGGAAGACTT
TGGGATGCTCGGCTGCAGCAACGAAGCCCTGCTGAAGGTGAAGGGTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7776:510..6458-

>mRNA_E_fasciculatus_S2_contig7776.15940.1 ID=mRNA_E_fasciculatus_S2_contig7776.15940.1|Name=mRNA_E_fasciculatus_S2_contig7776.15940.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=945bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7776:510..6458- (Ectocarpus fasciculatus EfasUO2)
GACCGTTCCCACCAGGTGTTAACGCCACTGTCCCCTTCAACACCCACGAG
GCTGGGCGCCATGCGACCGGCCACGCCTCCACGGGGCTTGGCCAGGTCCG
CCGTTGTGGGCAGTAGTTCTACGGACGCCTTCGCCTGGACGGCCTCGCCT
TGCAGAGCCCTCTCGGGCCTGGCGGTATTGCAAGTTTCCTGCGGGTCGAG
ACACACCCTGGCGACGGTCAAGGGGGGCGAGGCGTACAGCTGGGGATGGG
GGGCCTGCGGCCAGCTGGGTCATGGTGACGACCACAGCGTCGGCTGTCCT
AGAGTGATTGAGGCCCTGAAGACGGGAGAGAGTGATGCGGCCCTCGGACC
CGTCTCCTGGGTTTCCGCAGGAGGCATACATTCGGCCGCTGTGTTGGAGT
GTGGGCGCGTTTTCACGTGGGGGGGAAGCAGCTACGGTCAGCTCGGGCTG
GGCCCCGCAGTAACTACCCAGGGGATGCAGCCGTTGCCAGGGAAAGTTAT
GCTTTCGGAGACCGAAAGTCCTCTTGGCTCCCCTCGCGCTAGCGCCACGG
GGCTTACGAGGCACTCGAGCATGACCCAGAAAGCGGCGGTTTTGGCGATG
GAGACAGCCCCGAAGACAGAGTTGCTGGCCAAAACAGTGGTCTGCGGGGG
AATGCACACGGCCGCTCTTACCGCCGAGGGAGTTGTATACTGCTGGGGGC
GTGCAGACAGCGGGCAGCTGGGGATCGGCGCCGCATGGGTCCACGAGACT
TCGTCCGGGGTGATGGGCGTCGAATGGCCGAGGAGGGTTCGCGGGTTGCT
CGAAGGCCGCCGCACGGAATCGATTGCGTGCGGCGGTTTCCACACGGCGG
CGGTGACGACGGACGGGGAGTGCTACACGTGGGGCAAGGAAGACTTTGGG
ATGCTCGGCTGCAGCAACGAAGCCCTGCTGAAGGTGAAGGGTTAG
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