mRNA_E_fasciculatus_S2_contig7733.15898.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7733.15898.1
Unique NamemRNA_E_fasciculatus_S2_contig7733.15898.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7733.15898.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 600 bits (1547), Expect = 7.780e-203
Identity = 357/535 (66.73%), Postives = 388/535 (72.52%), Query Frame = 2 
Query:  212 GGGGLRGNGDRGGDGRFPSEGGGGNFSPRTTYTGFGHVESLWDDNDDEEGGQDIREDGAGLAGDYSAGWGMGGATGPGYQSSYDGGIEAGV---PRSEAAVHPPYHSSTGASAAGNTNAWMWGPPSGEHRHDSTTTTTRPSLDGPPRPSRSTPLFANCSPVQQXXXXXXXXXXXXETAVSGRHQDGDPSSYLESLRGXXXXXXXXXXXSARHYPENQQCRHEGAATAAGGTSGTEENPFGRSSAIGGVGARAHEEVDRETANADARVEMRSTQDILSLFGGFGGTPSTQGGHDRDSPEREAAGSPRRGPTEAPLRSQASEDALMPAGGGVRRAADMRRAQKEARVAAAPPGGG--VAGTATGATSARGATNDAAVTGDWACGTCGVRGSPSSASCRVCGAKRQGLRSDGVAQGGDDDVRGGIDSQEHRVGWPRGDDFGGGGGWQEQASEGGAGEMGDRAVSVSLDSVEGQRLEAGDAAGRWRSCSPDRPAIPQTGTGGDGEGAFGGSGALGTGSNRGQSGPRMQMDMGSSSDSDD 1801
            GG  LRGNGDRGGDGRFPS  GGG  SPRTTYTGFGHVESLWD++++E+ GQD  EDGAGLA ++ AGWGMGGA GPGYQ+ YD G E+ V    RSEAAV PPYH STG SA G+TN WMWGPP+GEH           SLDGP RPSRST  FA+ SP QQ            ETAV G H +  PSSYLE LR            SA HYPENQ+C  +GA TAAGGT G EEN FGR +AIGG G+R  EEVDRET    AR+EMRSTQDILSLFGGFGGTPSTQGGHD    ERE A S  RGPTEAPL SQAS DALMP GGG+RRA DMRR QKEAR A         VAG  TGA SARGA+ND AVTGDWACGTCGVRG  SSASCRVCGAKRQ LRSDGVAQGGDD VRGGI SQE RVGW RGDDFGGG   Q++A EG AG++GDR V + +   EG  LEAG A GRWR+ SPDRPA PQ+G GG GEGAFGGS  L T S+  + G RMQMDMGSSSDSD+
Sbjct:  293 GGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHRAGWGMGGAAGPGYQNPYDVGNESDVLQQARSEAAVQPPYHRSTGTSAVGSTNTWMWGPPAGEH-----------SLDGPLRPSRSTADFASGSPAQQQQQERGRHD---ETAVPGHHGEDGPSSYLERLRRGNDDDDDVGRRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLGSQASGDALMPVGGGIRRAVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKRQELRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGERPQKKALEGRAGDVGDRPVILGI--AEG--LEAG-APGRWRTSSPDRPAFPQSGAGGGGEGAFGGS-VLETPSSCRKIGHRMQMDMGSSSDSDE 807
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BLAST of mRNA_E_fasciculatus_S2_contig7733.15898.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 8.850e-129
Identity = 240/350 (68.57%), Postives = 259/350 (74.00%), Query Frame = 2 
Query:  758 GDPSSYLESLRGXXXXXXXXXXXSARHYPENQQCRHEGAATAAGGTSGTEENPFGRSSAIGGVGARAHEEVDRETANADARVEMRSTQDILSLFGGFGGTPSTQGGHDRDSPEREAAGSPRRGPTEAPLRSQASEDALMPAGGGVRRAADMRRAQKEARVAAAP--PGGGVAGTATGATSARGATNDAAVTGDWACGTCGVRGSPSSASCRVCGAKRQGLRSDGVAQGGDDDVRGGIDSQEHRVGWPRGDDFGGGGGWQEQASEGGAGEMGDRAVSVSLDSVEGQRLEAGDAAGRWRSCSPDRPAIPQTGTGGDGEGAFGGSGALGTGSNRGQSGPRMQMDMGSSSDSDD 1801
            G+P   +E LR            SA HYPENQ+C  +GA TAAGGT G EEN FGR +AIGG GAR  EEVDRET    ARVEMRSTQDILSLFGGFGGTPSTQGGHD  S  RE A + R GPTEAPL SQAS DAL P GGG+RRAADM RAQKEAR AAA            TGA+SARGA ND AV GDW CGTCGVRG PSSASCRVCGAKR+GLRSDGVAQGGDD VRGGI SQE RVGW RGDDFGGGG  QE+ASEGGAG++GDR V++ +   EG  LEAG A GRWR+ SPDRPA PQ+  GG GEGA G S  L T S+  + GPRMQMDMGSSSDSDD
Sbjct:  149 GEPELEMELLR-RGDDGDDAGGRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGARVPEEVDRETPGYVARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSHGRETAETQRHGPTEAPLGSQASGDALRPVGGGIRRAADMHRAQKEARAAAATVXXXXXXXXXXTGASSARGAPNDDAVMGDWVCGTCGVRGDPSSASCRVCGAKREGLRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGI--AEG--LEAGGAPGRWRTSSPDRPAFPQSRAGGGGEGACGVS-VLETPSSCQKIGPRMQMDMGSSSDSDD 492
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7733.15898.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RanBP2-type7.780e-20366.73domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RanBP2-type8.850e-12968.57domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7733contigE_fasciculatus_S2_contig7733:552..2624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2073
Hectar predicted targeting categoryother localisation
Exons1
Cds size1773
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.464342-UTR-E_fasciculatus_S2_contig7733:551..5851696842435.464342-UTR-E_fasciculatus_S2_contig7733:551..585Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7733 552..585 +
1696842435.4909587-UTR-E_fasciculatus_S2_contig7733:2358..26241696842435.4909587-UTR-E_fasciculatus_S2_contig7733:2358..2624Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7733 2359..2624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.4774942-CDS-E_fasciculatus_S2_contig7733:585..23581696842435.4774942-CDS-E_fasciculatus_S2_contig7733:585..2358Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7733 586..2358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7733.15898.1prot_E_fasciculatus_S2_contig7733.15898.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7733 586..2358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7733.15898.1

>prot_E_fasciculatus_S2_contig7733.15898.1 ID=prot_E_fasciculatus_S2_contig7733.15898.1|Name=mRNA_E_fasciculatus_S2_contig7733.15898.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=591bp
MTTRPGAVAARQPPPHRARPPAAAAAKRENCSRRSRRPRGESRPPPPRLT
ILGGPCRWEGGGGLRGNGDRGGDGRFPSEGGGGNFSPRTTYTGFGHVESL
WDDNDDEEGGQDIREDGAGLAGDYSAGWGMGGATGPGYQSSYDGGIEAGV
PRSEAAVHPPYHSSTGASAAGNTNAWMWGPPSGEHRHDSTTTTTRPSLDG
PPRPSRSTPLFANCSPVQQQQQQQQQLPHHDETAVSGRHQDGDPSSYLES
LRGGDDDDDDAGGHSARHYPENQQCRHEGAATAAGGTSGTEENPFGRSSA
IGGVGARAHEEVDRETANADARVEMRSTQDILSLFGGFGGTPSTQGGHDR
DSPEREAAGSPRRGPTEAPLRSQASEDALMPAGGGVRRAADMRRAQKEAR
VAAAPPGGGVAGTATGATSARGATNDAAVTGDWACGTCGVRGSPSSASCR
VCGAKRQGLRSDGVAQGGDDDVRGGIDSQEHRVGWPRGDDFGGGGGWQEQ
ASEGGAGEMGDRAVSVSLDSVEGQRLEAGDAAGRWRSCSPDRPAIPQTGT
GGDGEGAFGGSGALGTGSNRGQSGPRMQMDMGSSSDSDDP*
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mRNA from alignment at E_fasciculatus_S2_contig7733:552..2624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7733.15898.1 ID=mRNA_E_fasciculatus_S2_contig7733.15898.1|Name=mRNA_E_fasciculatus_S2_contig7733.15898.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2073bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7733:552..2624+ (Ectocarpus fasciculatus EfasUO2)
TACATCGTTTCCTTGGACGGTGTCATACAACCCGATGACAACGCGTCCGG
GGGCAGTGGCGGCTCGGCAACCACCCCCGCACAGAGCACGGCCGCCGGCG
GCGGCGGCGGCAAAAAGAGAAAATTGTTCAAGGCGTTCAAGGCGCCCGCG
AGGAGAGAGCCGACCCCCGCCCCCCCGCCTGACGATTCTTGGGGGCCCCT
GCCGCTGGGAGGGGGGGGGGGGTCTCCGCGGGAACGGTGACAGAGGCGGG
GATGGCCGTTTTCCTTCCGAAGGAGGAGGCGGAAATTTTTCCCCTCGCAC
GACGTACACCGGATTCGGCCACGTCGAATCCTTGTGGGATGACAACGACG
ACGAAGAGGGAGGACAGGACATCCGTGAGGATGGAGCTGGGCTGGCTGGC
GATTACAGTGCTGGGTGGGGCATGGGAGGGGCTACTGGGCCGGGCTACCA
GAGTTCATACGATGGCGGTATCGAGGCGGGCGTGCCCCGGTCCGAAGCAG
CAGTGCACCCGCCGTACCACTCGTCGACCGGCGCCTCAGCAGCAGGCAAT
ACGAATGCCTGGATGTGGGGGCCGCCGTCTGGGGAGCACCGCCATGATAG
TACCACCACCACCACACGACCGTCGCTCGATGGGCCGCCGCGGCCGTCTC
GATCGACCCCTCTTTTTGCCAACTGCTCTCCTGTGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCTACCTCATCACGACGAGACAGCAGTATCTGGCCGCCA
CCAAGACGGTGACCCTTCTTCCTACCTCGAAAGCCTTCGGGGAGGAGACG
ACGACGACGACGACGCGGGAGGACACAGCGCGCGCCATTACCCCGAGAAT
CAACAGTGCCGCCACGAGGGCGCCGCGACAGCGGCTGGAGGCACCAGTGG
CACGGAAGAAAACCCGTTCGGGCGTAGCAGCGCTATCGGCGGTGTTGGCG
CCCGCGCCCACGAGGAGGTCGATCGCGAAACAGCCAATGCTGATGCTAGG
GTGGAGATGCGGTCCACCCAGGACATCCTCTCCCTGTTCGGCGGCTTCGG
AGGGACGCCGTCTACCCAAGGTGGGCACGATCGCGACTCGCCGGAACGAG
AGGCGGCCGGGAGTCCTCGCCGCGGGCCAACTGAAGCCCCTCTCCGATCG
CAAGCATCCGAGGATGCTCTCATGCCGGCCGGGGGCGGCGTTCGCCGGGC
GGCGGACATGCGCCGGGCTCAGAAAGAGGCCCGGGTGGCGGCGGCGCCGC
CTGGAGGAGGCGTAGCTGGCACGGCAACCGGAGCGACATCGGCGAGGGGC
GCCACCAACGACGCCGCGGTTACGGGGGACTGGGCTTGCGGAACGTGCGG
GGTGCGCGGGAGCCCCTCGTCTGCGTCGTGCCGTGTCTGCGGAGCCAAGC
GACAAGGACTTCGGAGTGATGGCGTTGCGCAGGGCGGCGACGATGATGTT
AGGGGGGGCATCGACAGCCAGGAACACCGGGTGGGTTGGCCTCGGGGGGA
TGACTTCGGCGGAGGCGGAGGGTGGCAAGAACAGGCTTCGGAAGGTGGAG
CAGGAGAAATGGGCGATCGGGCTGTTTCTGTTAGCCTCGACAGTGTAGAA
GGCCAGAGGCTTGAGGCGGGAGATGCCGCTGGGCGGTGGCGCAGTTGTTC
TCCGGACCGCCCTGCAATCCCGCAGACAGGAACCGGGGGTGACGGGGAGG
GTGCTTTTGGGGGTAGTGGTGCGCTTGGGACGGGGAGCAACCGTGGGCAG
AGCGGTCCTCGAATGCAGATGGACATGGGCTCTTCGTCGGATAGCGACGA
TCCTTGAAGCCCCGACGTTTATTGTTCATTTTCGTTTGATTTCCATGGCG
TGCTGCTTTCTGTGAACCTATGTACTTGTTGGTACAGTTCTGTACTCGTC
TTTTTTTGCATTACGAAGTTTGCGAAAGCACACTTCATGGGCGCGGCCTG
CTACCGTCGTATACATACTCGATATTGGGTTGAATTGTGAGCAGACGCGG
ATTGAAGCACCGAACTGACCGGGGAGATTTGAACCTTGCGACACGCGGAA
CTGTATGTGCCCATAGTCTAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7733:552..2624+

>mRNA_E_fasciculatus_S2_contig7733.15898.1 ID=mRNA_E_fasciculatus_S2_contig7733.15898.1|Name=mRNA_E_fasciculatus_S2_contig7733.15898.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1773bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7733:552..2624+ (Ectocarpus fasciculatus EfasUO2)
ATGACAACGCGTCCGGGGGCAGTGGCGGCTCGGCAACCACCCCCGCACAG
AGCACGGCCGCCGGCGGCGGCGGCGGCAAAAAGAGAAAATTGTTCAAGGC
GTTCAAGGCGCCCGCGAGGAGAGAGCCGACCCCCGCCCCCCCGCCTGACG
ATTCTTGGGGGCCCCTGCCGCTGGGAGGGGGGGGGGGGTCTCCGCGGGAA
CGGTGACAGAGGCGGGGATGGCCGTTTTCCTTCCGAAGGAGGAGGCGGAA
ATTTTTCCCCTCGCACGACGTACACCGGATTCGGCCACGTCGAATCCTTG
TGGGATGACAACGACGACGAAGAGGGAGGACAGGACATCCGTGAGGATGG
AGCTGGGCTGGCTGGCGATTACAGTGCTGGGTGGGGCATGGGAGGGGCTA
CTGGGCCGGGCTACCAGAGTTCATACGATGGCGGTATCGAGGCGGGCGTG
CCCCGGTCCGAAGCAGCAGTGCACCCGCCGTACCACTCGTCGACCGGCGC
CTCAGCAGCAGGCAATACGAATGCCTGGATGTGGGGGCCGCCGTCTGGGG
AGCACCGCCATGATAGTACCACCACCACCACACGACCGTCGCTCGATGGG
CCGCCGCGGCCGTCTCGATCGACCCCTCTTTTTGCCAACTGCTCTCCTGT
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACCTCATCACGACGAGACAG
CAGTATCTGGCCGCCACCAAGACGGTGACCCTTCTTCCTACCTCGAAAGC
CTTCGGGGAGGAGACGACGACGACGACGACGCGGGAGGACACAGCGCGCG
CCATTACCCCGAGAATCAACAGTGCCGCCACGAGGGCGCCGCGACAGCGG
CTGGAGGCACCAGTGGCACGGAAGAAAACCCGTTCGGGCGTAGCAGCGCT
ATCGGCGGTGTTGGCGCCCGCGCCCACGAGGAGGTCGATCGCGAAACAGC
CAATGCTGATGCTAGGGTGGAGATGCGGTCCACCCAGGACATCCTCTCCC
TGTTCGGCGGCTTCGGAGGGACGCCGTCTACCCAAGGTGGGCACGATCGC
GACTCGCCGGAACGAGAGGCGGCCGGGAGTCCTCGCCGCGGGCCAACTGA
AGCCCCTCTCCGATCGCAAGCATCCGAGGATGCTCTCATGCCGGCCGGGG
GCGGCGTTCGCCGGGCGGCGGACATGCGCCGGGCTCAGAAAGAGGCCCGG
GTGGCGGCGGCGCCGCCTGGAGGAGGCGTAGCTGGCACGGCAACCGGAGC
GACATCGGCGAGGGGCGCCACCAACGACGCCGCGGTTACGGGGGACTGGG
CTTGCGGAACGTGCGGGGTGCGCGGGAGCCCCTCGTCTGCGTCGTGCCGT
GTCTGCGGAGCCAAGCGACAAGGACTTCGGAGTGATGGCGTTGCGCAGGG
CGGCGACGATGATGTTAGGGGGGGCATCGACAGCCAGGAACACCGGGTGG
GTTGGCCTCGGGGGGATGACTTCGGCGGAGGCGGAGGGTGGCAAGAACAG
GCTTCGGAAGGTGGAGCAGGAGAAATGGGCGATCGGGCTGTTTCTGTTAG
CCTCGACAGTGTAGAAGGCCAGAGGCTTGAGGCGGGAGATGCCGCTGGGC
GGTGGCGCAGTTGTTCTCCGGACCGCCCTGCAATCCCGCAGACAGGAACC
GGGGGTGACGGGGAGGGTGCTTTTGGGGGTAGTGGTGCGCTTGGGACGGG
GAGCAACCGTGGGCAGAGCGGTCCTCGAATGCAGATGGACATGGGCTCTT
CGTCGGATAGCGACGATCCTTGA
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