mRNA_E_fasciculatus_S2_contig773.15895.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig773.15895.1
Unique NamemRNA_E_fasciculatus_S2_contig773.15895.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig773.15895.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI5_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 2.690e-132
Identity = 224/277 (80.87%), Postives = 234/277 (84.48%), Query Frame = 3 
Query:   69 SFIRLAAVLAACLPVRGLISNSAGGGGHRPQQGSRQVRTPLRAIAGASADQVREALITSEAFKDLVERLEERSRQEAGTTATSTPADTSHEQHAFTAAPDRKHAAEHGGGSSDHAKQASYVWKRNSEKLDGLRTAVLESPKAREMREAFKTDSGNTINRPNGSTPAAPPSTAPA---------------LHTEQQDAVEQQLRAVEPRSTAAADAAVADGEALLPTEPQEVEEEGKGRKRFRWIGRVASRVSNVGKRVRGRVTRIGAKETTSGEEEH 854
            SF+RLAAVLAACLPVRGLISNSAGGG HR QQGSRQ RTP RAIAGASAD+VREALITSEAFKDLVERLE+RSRQEAG TATSTP DT HEQHAFTAAPDRK AAEHGGGS+DHAKQA++  KRNSEKL GLRTAVLESPKAREMREAFKT++GN I RPNGSTP  PPSTAPA               L TEQQ  VE+QLRA E  STAAA   VADGEALLPTEP EVEE GKGRKRFRWIGRVAS VSNVGKRVRGRVTRIGAK+TT GEEEH
Sbjct:    2 SFLRLAAVLAACLPVRGLISNSAGGGAHRLQQGSRQARTPRRAIAGASADEVREALITSEAFKDLVERLEDRSRQEAGATATSTPVDTWHEQHAFTAAPDRKDAAEHGGGSNDHAKQANHARKRNSEKLAGLRTAVLESPKAREMREAFKTNNGNAIGRPNGSTPPTPPSTAPASASTGDVAAAISAPALGTEQQGTVEKQLRAEEHSSTAAA--VVADGEALLPTEPLEVEE-GKGRKRFRWIGRVASSVSNVGKRVRGRVTRIGAKDTTPGEEEH 275
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig773.15895.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.690e-13280.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig773contigE_fasciculatus_S2_contig773:21554..24244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size894
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003840.1
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.1882358-UTR-E_fasciculatus_S2_contig773:21553..216151696842435.1882358-UTR-E_fasciculatus_S2_contig773:21553..21615Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig773 21554..21615 +
1696842435.2209294-UTR-E_fasciculatus_S2_contig773:24213..242441696842435.2209294-UTR-E_fasciculatus_S2_contig773:24213..24244Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig773 24214..24244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.2019439-CDS-E_fasciculatus_S2_contig773:21615..220351696842435.2019439-CDS-E_fasciculatus_S2_contig773:21615..22035Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig773 21616..22035 +
1696842435.2114842-CDS-E_fasciculatus_S2_contig773:23832..242131696842435.2114842-CDS-E_fasciculatus_S2_contig773:23832..24213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig773 23833..24213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig773.15895.1prot_E_fasciculatus_S2_contig773.15895.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig773 21616..24213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig773.15895.1

>prot_E_fasciculatus_S2_contig773.15895.1 ID=prot_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=267bp
MASFIRLAAVLAACLPVRGLISNSAGGGGHRPQQGSRQVRTPLRAIAGAS
ADQVREALITSEAFKDLVERLEERSRQEAGTTATSTPADTSHEQHAFTAA
PDRKHAAEHGGGSSDHAKQASYVWKRNSEKLDGLRTAVLESPKAREMREA
FKTDSGNTINRPNGSTPAAPPSTAPALHTEQQDAVEQQLRAVEPRSTAAA
DAAVADGEALLPTEPQEVEEEGKGRKRFRWIGRVASRVSNVGKRVRGRVT
RIGAKETTSGEEEHSP*
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mRNA from alignment at E_fasciculatus_S2_contig773:21554..24244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig773.15895.1 ID=mRNA_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2691bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig773:21554..24244+ (Ectocarpus fasciculatus EfasUO2)
CGGGATGCTGTGGTGATGTGGTGATAAACGCGACGACAGACACCTTCTGA
CGACGGAGCTTCATGGCGAGCTTCATACGACTGGCAGCTGTGCTTGCAGC
CTGCCTGCCTGTGCGAGGGTTGATATCAAATTCTGCTGGTGGTGGTGGTC
ATAGACCGCAGCAAGGTAGCAGGCAGGTGCGAACCCCACTCCGCGCTATC
GCTGGCGCAAGCGCGGATCAAGTCCGAGAGGCTCTCATCACCAGCGAAGC
TTTCAAGGACCTGGTTGAGAGGCTTGAAGAGAGATCACGCCAAGAGGCTG
GCACTACGGCAACATCCACTCCTGCCGATACTTCGCACGAGCAGCACGCG
TTTACGGCGGCGCCAGATCGAAAGCATGCTGCGGAACACGGAGGAGGCAG
CAGCGATCACGCGAAGCAGGCGAGCTACGTGTGGAAGAGGAACTCGGAGA
AGCTCGATGGTTTGAGGACGGCTGTACTCGAGGTAGAAAACCCGGTGTGT
ACCTGCGTGTTCGACGTGTTCGGTGTAGTGTTTACAACAGAATTGGAGCT
GTGAGTGATTTTCATGGGTGTTTTGTGCATGATGGCAGCGGTGCAACCGC
TGACGATCTACTCTGCAAGTCTAGTTACGCTGATGATCTACACATTTTAT
CATTTTATCGACCAAAAAAAACATCCGAAACGATCCTAGCAGACGACCAA
ACCACAACAATCACGACAATCACAACATTGGCTGCTGCACATTGATGCAC
ACCCTCGCACGTACAACAGTAGTGATCCCTGTTTAAGGCCGCAACGTGCA
AAAGGATTTGACCGCGGCCTCATGACGGGCAAGCGGCATTTGTCCCAGAG
CTCAGGATAAGAGGCAATCATATGTTCTGGTTCTGTGTAACGCGATTTCA
CCGGCCACGTGCACGGCGTCCTGCCTTCCAGCGCGCCACACTCAGGCGTA
CGCACATGTTAGAAACTCTTCTTCTCCGAGGCTCGCGCCGCAACGGCCGC
GGAATTCTTAGTGGGGTCCGGCTTTTCCCGCTGAAACTGCCCCATACAGG
ACCACGCTCGTATTTTTTTTCTTTATTGGGCGGGACGTAGGCTTCTGTAG
TTCATTATATGAAAATGCGTTCGTTGTTGTTATTGTTTTTGTTTTTGTTT
TTCCTAATATAACACAACGAGTCGATCTCTATCAGAGAAAAGAGTCAAAG
ATAGATTAGCAATGGAATCATAGCGTCAGAGAAAACTACCTGTTTGTTTT
ACCACATGCGTTGGCTGAGATCTTAGGAGATGTCAGTACTTCCTGGGTTA
AACACAAACCTGAGCCGCCGCGATCAGCCTATACATGTAGGCACTCCAAA
GGCAGTGAAACGTACGGCATTATGAGCAACTCTCAAACCTTTTGATCCAA
ACAATGGCGACGTTGGGCATTCCACTACGGTATATACAGTAGTGCGGACG
CCCGTTGTACACAGCTACAGCTCCACAGTCGCACCATCCACCCCACGAGC
TAGGTTTCAACAGCAATGAATTGCAGCGGGCAATGAAGACGCCTGAATGC
GAAAATTGCCTGGAATTTCCATGCCCTGATCTCGTCGTCTTCGTCCATGC
TATTGTTGGTCCAGAAGACCGAGCTCGTTGTTACTGGACACATGATTTTT
CTAGGCAGATGATGATATTCGTCAGTACAATAGTGTGAGTAACCTCGCGT
GTAAAACAACAAAACAACTGAACCAACACCACAAACGATGACGGCTTCGC
GAAGGAAACGTGAAAATCGCGGTGAAAATCAAACTTGCCCAAACACGTGG
TGTTTGTCCTTGTGTGCATCCGGTGCCTCAACCTTGGGCACGCTTGTGAG
AAACTAGTCGCGTGGAGACTAAAGTAGTCGATTTCGCCAATCGCTGACTG
CTGGACAAGGTCTCCGAGACATGGGATGCTGTCCTGTTTGCAACCGCTGC
TGCTTGTCTATATCGCTCTCTTTTGACATCTATTTTATTCTCGAAGACCC
TACAGGAGGTCTTGCCCTCCACGTGCCTTCAGTACATGCCAGCATATTGA
ACCCTCCGTTGAGATGAAAACATTCCCTTTGAAGTCGCCCAAGGTACGAG
TGTTTTACGGTACTACTGCTGTAGTGTTTACGGTACTACTGTAGTTGAGC
ACACGGAAACAGTTTTCCACCACATGCGCGGCAAGTACGTATACAGAATG
GTTCGACGCACATATGCAACCTTCGTTTCCAGAATCTGAACTGTGCGCTC
GTGCTGTTGCCAATATCTGCCGTTCACAGAGCCCAAAAGCACGCGAAATG
CGGGAAGCGTTCAAAACGGACAGCGGGAATACCATCAACCGACCAAACGG
CTCGACGCCCGCGGCTCCGCCATCAACCGCGCCCGCTTTGCACACTGAAC
AACAAGACGCAGTCGAGCAGCAGCTCCGGGCGGTAGAACCCAGATCTACC
GCTGCTGCTGATGCTGCTGTGGCCGACGGGGAGGCACTGCTTCCAACGGA
GCCGCAGGAGGTAGAGGAGGAGGGGAAGGGTCGGAAGCGGTTCCGATGGA
TTGGACGCGTAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTGAGGGGG
CGGGTGACGCGAATCGGGGCGAAAGAAACAACATCGGGAGAAGAGGAGCA
CAGTCCCTGAAGAACAGGCGACGAAATCCGACTGAGTATGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig773:21554..24244+

>mRNA_E_fasciculatus_S2_contig773.15895.1 ID=mRNA_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig773:21554..24244+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGAGCTTCATACGACTGGCAGCTGTGCTTGCAGCCTGCCTGCCTGT
GCGAGGGTTGATATCAAATTCTGCTGGTGGTGGTGGTCATAGACCGCAGC
AAGGTAGCAGGCAGGTGCGAACCCCACTCCGCGCTATCGCTGGCGCAAGC
GCGGATCAAGTCCGAGAGGCTCTCATCACCAGCGAAGCTTTCAAGGACCT
GGTTGAGAGGCTTGAAGAGAGATCACGCCAAGAGGCTGGCACTACGGCAA
CATCCACTCCTGCCGATACTTCGCACGAGCAGCACGCGTTTACGGCGGCG
CCAGATCGAAAGCATGCTGCGGAACACGGAGGAGGCAGCAGCGATCACGC
GAAGCAGGCGAGCTACGTGTGGAAGAGGAACTCGGAGAAGCTCGATGGTT
TGAGGACGGCTGTACTCGAGAGCCCAAAAGCACGCGAAATGCGGGAAGCG
TTCAAAACGGACAGCGGGAATACCATCAACCGACCAAACGGCTCGACGCC
CGCGGCTCCGCCATCAACCGCGCCCGCTTTGCACACTGAACAACAAGACG
CAGTCGAGCAGCAGCTCCGGGCGGTAGAACCCAGATCTACCGCTGCTGCT
GATGCTGCTGTGGCCGACGGGGAGGCACTGCTTCCAACGGAGCCGCAGGA
GGTAGAGGAGGAGGGGAAGGGTCGGAAGCGGTTCCGATGGATTGGACGCG
TAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTGAGGGGGCGGGTGACG
CGAATCGGGGCGAAAGAAACAACATCGGGAGAAGAGGAGCACAGTCCCTG
A
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