mRNA_E_fasciculatus_S2_contig7720.15887.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7720.15887.1
Unique NamemRNA_E_fasciculatus_S2_contig7720.15887.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Mitochondrial (inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochond n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.160e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL
Sbjct:   46 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 114
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.530e-37
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSRMQNQLKVEGQ+PKYKHTIPSLITVV EEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL
Sbjct:  237 VKSRMQNQLKVEGQIPKYKHTIPSLITVVSEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 305
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V6S6_9ASCO)

HSP 1 Score: 83.6 bits (205), Expect = 8.210e-18
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSR+QN  +V G +PKY  T+PS++TV  EEG AA+YKG  P+++RLGPGGGI+LV F  ++D    +
Sbjct:  200 VKSRIQNTTRVPGVIPKYNWTVPSVVTVFREEGFAALYKGFLPKVLRLGPGGGILLVVFTGVMDFFRSI 268
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5G6Y9_TUBMM)

HSP 1 Score: 84.0 bits (206), Expect = 1.250e-17
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSR+QN ++V+G VPKY  T+PS+  V  EEGLAA+YKG  P+++RLGPGGGI+LV F +++D    L
Sbjct:  259 VKSRIQNTVRVKGIVPKYNWTLPSIALVAKEEGLAALYKGFVPKVLRLGPGGGILLVVFTSVIDFYKKL 327
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084FUT7_PSEDA)

HSP 1 Score: 83.6 bits (205), Expect = 1.250e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 192
            VKSR+QN +KV GQVPKY    P+L TV  EEG+ A+YKG  P+++RLGPGGGI+LV F  ++D
Sbjct:  228 VKSRIQNTVKVPGQVPKYNWAWPALFTVAREEGIGALYKGFAPKVLRLGPGGGILLVVFTGVMD 291
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Putative (mitochondrial 2-oxodicarboxylate carrier n=1 Tax=Drechslerella stenobrocha 248 TaxID=1043628 RepID=W7IGP9_9PEZI)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-17
Identity = 37/68 (54.41%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLND 204
            VKSR+QN ++V+GQVPKY  TIP++ TV  EEG AA+YKG  P+++RLGPGGGI+LV +  +++   +
Sbjct:  229 VKSRIQNTVRVKGQVPKYNWTIPAVATVAREEGFAALYKGFLPKVLRLGPGGGILLVVYTGVIEFFEN 296
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WF09_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.010e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSRMQ Q+ V G+  KY++++ ++  V  EEG AA+YKG+GPRLVRLGPGGGIM+V+F+ + +LL DL
Sbjct:  247 VKSRMQLQVPVPGEGLKYRNSLQAISVVAREEGTAALYKGLGPRLVRLGPGGGIMIVAFDFVSNLLRDL 315
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3MY03_9PEZI)

HSP 1 Score: 83.2 bits (204), Expect = 2.450e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILDLLNDL 207
            VKSR+QN +KV GQVPKY    P+LITV  EEG  A+YKG  P+++RLGPGGGI+LV F  ++D    +
Sbjct:  261 VKSRIQNTVKVPGQVPKYNWAWPALITVAREEGFGALYKGFIPKVLRLGPGGGILLVVFTGVMDFFRTM 329
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8BZD1_DACHA)

HSP 1 Score: 82.8 bits (203), Expect = 2.630e-17
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 192
            VKSR+QN +KV+GQ+PKY  TIPSL  V  EEG AA+YKG  P+++RLGPGGGI+LV +  +++
Sbjct:  228 VKSRIQNTVKVKGQIPKYNWTIPSLAIVAREEGFAALYKGFLPKVLRLGPGGGILLVVYTNVIE 291
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BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Match: Mitochondrial (carrier n=3 Tax=Tuberaceae TaxID=40289 RepID=A0A317SR27_9PEZI)

HSP 1 Score: 82.8 bits (203), Expect = 2.740e-17
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 VKSRMQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGIMLVSFNAILD 192
            VKSR+QN +KV+G VPKY  T+PS+  V  EEG AA+YKG  P+++RLGPGGGI+LV F +++D
Sbjct:  239 VKSRIQNTVKVKGVVPKYNWTLPSIALVAKEEGFAALYKGFLPKVLRLGPGGGILLVVFTSVID 302
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7720.15887.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mitochondrial2.160e-40100.00inner membrane transporter, exports 2-oxoadipate a... [more]
Uncharacterized4.530e-3797.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.210e-1853.62protein n=1 Tax=Trichomonascus ciferrii TaxID=4409... [more]
Uncharacterized1.250e-1756.52protein n=1 Tax=Tuber melanosporum (strain Mel28) ... [more]
Uncharacterized1.250e-1759.38protein n=1 Tax=Pseudallescheria apiosperma TaxID=... [more]
Putative1.910e-1754.41mitochondrial 2-oxodicarboxylate carrier n=1 Tax=D... [more]
Hypothetical2.010e-1757.97protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Uncharacterized2.450e-1756.52protein (Fragment) n=1 Tax=Lomentospora prolifican... [more]
Uncharacterized2.630e-1759.38protein n=1 Tax=Dactylellina haptotyla (strain CBS... [more]
Mitochondrial2.740e-1759.38carrier n=3 Tax=Tuberaceae TaxID=40289 RepID=A0A31... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7720contigE_fasciculatus_S2_contig7720:6519..7241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.3
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FJR3
Preferred nameSLC25A21
Model size210
KEGG koko:K15110
KEGG TC2.A.29.2.4,2.A.29.2.5,2.A.29.2.8
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006520,GO:0006553,GO:0006554,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009987,GO:0015075,GO:0015139,GO:0015318,GO:0015711,GO:0015742,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051181,GO:0051184,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0098656,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1903825,GO:1905039,GO:1990542,GO:1990550,GO:1990551
Exons2
EggNOG free text desc.alpha-ketoglutarate transmembrane transporter activity
EggNOG OGsKOG0754@1,KOG0754@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-06_010510.1
Cds size198
COG Functional cat.U
BiGG ReactioniMM904.YPL134C,iND750.YPL134C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.3401334-CDS-E_fasciculatus_S2_contig7720:6518..66121696842434.3401334-CDS-E_fasciculatus_S2_contig7720:6518..6612Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7720 6519..6612 -
1696842434.357587-CDS-E_fasciculatus_S2_contig7720:7125..72291696842434.357587-CDS-E_fasciculatus_S2_contig7720:7125..7229Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7720 7126..7229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.3692594-UTR-E_fasciculatus_S2_contig7720:7229..72411696842434.3692594-UTR-E_fasciculatus_S2_contig7720:7229..7241Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7720 7230..7241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7720.15887.1prot_E_fasciculatus_S2_contig7720.15887.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7720 6519..7229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7720.15887.1

>prot_E_fasciculatus_S2_contig7720.15887.1 ID=prot_E_fasciculatus_S2_contig7720.15887.1|Name=mRNA_E_fasciculatus_S2_contig7720.15887.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
MQNQLKVEGQVPKYKHTIPSLITVVGEEGLAAVYKGIGPRLVRLGPGGGI
MLVSFNAILDLLNDL*
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mRNA from alignment at E_fasciculatus_S2_contig7720:6519..7241-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7720.15887.1 ID=mRNA_E_fasciculatus_S2_contig7720.15887.1|Name=mRNA_E_fasciculatus_S2_contig7720.15887.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7720:6519..7241- (Ectocarpus fasciculatus EfasUO2)
GTGAAGTCGCGAATGCAGAACCAGCTCAAGGTGGAGGGCCAAGTTCCCAA
GTACAAGCACACCATCCCGTCCCTCATCACGGTTGTGGGCGAGGAGGGGT
TGGCAGCCGTGTACAAGTGAGTCGGGTGTTTTCTGGACCCATCAGCTTTG
CAAACGGTAGCGTAACCATTGGGCACGTGCACGTAGTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTCCAGTCTCTGCTCAGTAC
CTTCTACAACATCCGTACGGGTCCAACTGAGGTGGACGCCTCACGTAGTC
ACAGACCCAACTACCCACATGATCAAGTTACACGTGTTGTGTATTTTTTT
CGCTGTGTTGTTTTTCTGTGGTGGGAAGACACGTTTGCTGTGTTGTATGC
ATGTCCCGTTCGTTTCCGTGTCCGCTTTTTTCGCATGGACCGACCGACAC
GCCGTGCATTGCTTCACTGCTATCACTCGAGCGTGCCCGCATAGACGTGA
GCTGCTTTCATGGAATTTTTTTTCGTGTTGCTTCATCTCGTGGCAGAGCT
TCACACGCCCGCCATCTACATCTCCGTCCTGATTTGTGTTTTTTGTTTTT
TGCGCACCGTTCGTTGATCGGATCGACAGGGGCATCGGCCCACGGCTTGT
CAGGCTTGGCCCCGGTGGCGGAATCATGCTCGTGTCCTTCAATGCCATCC
TGGACCTACTCAATGACTTGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7720:6519..7241-

>mRNA_E_fasciculatus_S2_contig7720.15887.1 ID=mRNA_E_fasciculatus_S2_contig7720.15887.1|Name=mRNA_E_fasciculatus_S2_contig7720.15887.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7720:6519..7241- (Ectocarpus fasciculatus EfasUO2)
ATGCAGAACCAGCTCAAGGTGGAGGGCCAAGTTCCCAAGTACAAGCACAC
CATCCCGTCCCTCATCACGGTTGTGGGCGAGGAGGGGTTGGCAGCCGTGT
ACAAGGGCATCGGCCCACGGCTTGTCAGGCTTGGCCCCGGTGGCGGAATC
ATGCTCGTGTCCTTCAATGCCATCCTGGACCTACTCAATGACTTGTAA
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