mRNA_E_fasciculatus_S2_contig770.15875.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig770.15875.1
Unique NamemRNA_E_fasciculatus_S2_contig770.15875.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Nephroretinin (4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.610e-44
Identity = 89/105 (84.76%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 NKPEATYEYSLDPDTKAAEKKLRRVVAKQA-----------RLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL 282
            N+ EATYEYSLDPDTKAAEKKLRRVVAKQ            RLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLA ST TADPVRRRQL
Sbjct: 2259 NEQEATYEYSLDPDTKAAEKKLRRVVAKQVWAGTGSISQQVRLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLAGSTSTADPVRRRQL 2363
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Hypothetical (protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.240e-14
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 EATYEYSLDPDTKAAEKKLRRVVAKQARLG-VDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL 282
            E  Y++S DPDT+  E+K+RR   K  + G VD+  +F R+D    G+I+RSDF+Q +MELG+ LLDS          T +G  DPV+RRQ+
Sbjct: 1885 ENAYKFSSDPDTREVERKIRRASRKMVQTGGVDIVELFSRYDEGDGGTIVRSDFIQVLMELGMSLLDSKGG-------TVSGETDPVKRRQV 1969
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVW1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.010e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   16 TYEYSLDPDTKAAEKKLRRVVAKQARLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL 282
            TYE+S DPD +A EKKLRR   + A  G DV  +  ++D D SGSI+RSDFVQ +M+LG+ L+D+     G    T     D +R RQL
Sbjct: 1799 TYEFSSDPDVRAIEKKLRRAAREVAARGGDVRLLASQYDRDNSGSIVRSDFVQFLMQLGLSLVDAG----GVPKDTRREAGDALRERQL 1883
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVW2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.010e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   16 TYEYSLDPDTKAAEKKLRRVVAKQARLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL 282
            TYE+S DPD +A EKKLRR   + A  G DV  +  ++D D SGSI+RSDFVQ +M+LG+ L+D+     G    T     D +R RQL
Sbjct: 2089 TYEFSSDPDVRAIEKKLRRAAREVAARGGDVRLLASQYDRDNSGSIVRSDFVQFLMQLGLSLVDAG----GVPKDTRREAGDALRERQL 2173
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y580_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 8.620e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 YEYSLDPDTKAAEKKLRRVVAKQARLGVDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHG 228
            YE+SLDPDT+  EKKLRR   + A  G DV  +  ++D +  GS++RSDFVQ +M+LG+ L+D      G
Sbjct:  418 YEFSLDPDTRCVEKKLRRAARELAGRGGDVRLLLDQYDVEGVGSVIRSDFVQVLMQLGLSLVDGGGPPRG 487
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BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.710e-10
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   19 YEYSLDPDTKAAEKKLRRVVAKQARLG----VDVEGVFRRHDPDQSGSILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL 282
            YE+S D D +AAEKKLRR+V  + R G      V+ +F   D   +G+++RSDF+  +MELG+ L D  NS     L  + G +D  R+RQL
Sbjct:  928 YEFSADIDVRAAEKKLRRLVRLEQRSGRLAPAHVQAIFEGFDNRSTGTVVRSDFLLCLMELGLSLYDGDNS--AGALTVAPGKSDRKRQRQL 1017
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig770.15875.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Nephroretinin1.610e-4484.764 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Hypothetical5.240e-1444.57protein n=2 Tax=Triparma pacifica TaxID=91992 RepI... [more]
Hypothetical3.010e-1247.19protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical3.010e-1247.19protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized8.620e-1147.14protein (Fragment) n=1 Tax=Aureococcus anophageffe... [more]
Hypothetical1.710e-1042.39protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig770contigE_fasciculatus_S2_contig770:23677..24310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D8LAY6
Model size286
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
Exons3
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Cds size282
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.2795196-CDS-E_fasciculatus_S2_contig770:23678..237391696842433.2795196-CDS-E_fasciculatus_S2_contig770:23678..23739Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 23679..23739 -
1696842433.298322-CDS-E_fasciculatus_S2_contig770:23916..240501696842433.298322-CDS-E_fasciculatus_S2_contig770:23916..24050Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 23917..24050 -
1696842433.3127153-CDS-E_fasciculatus_S2_contig770:24223..243101696842433.3127153-CDS-E_fasciculatus_S2_contig770:24223..24310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 24224..24310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig770.15875.1prot_E_fasciculatus_S2_contig770.15875.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig770 23679..24310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig770.15875.1

>prot_E_fasciculatus_S2_contig770.15875.1 ID=prot_E_fasciculatus_S2_contig770.15875.1|Name=mRNA_E_fasciculatus_S2_contig770.15875.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
NKPEATYEYSLDPDTKAAEKKLRRVVAKQARLGVDVEGVFRRHDPDQSGS
ILRSDFVQAVMELGVGLLDSSNSRHGNRLATSTGTADPVRRRQL
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mRNA from alignment at E_fasciculatus_S2_contig770:23677..24310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig770.15875.1 ID=mRNA_E_fasciculatus_S2_contig770.15875.1|Name=mRNA_E_fasciculatus_S2_contig770.15875.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=634bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:23677..24310- (Ectocarpus fasciculatus EfasUO2)
AATAAGCCAGAGGCAACGTACGAATACTCACTAGATCCGGACACAAAAGC
CGCAGAGAAGAAACTGCGCAGGGTGGTCGCAAAGCAGGTGTGGGCTGGAA
AGAGGTGGATAAATCAGCAAGTTTGATTGCCTTGGCCTGTGGTCTTCTCG
ATGGTAGCCAGGAAGATCCATTCCCGGTATTTGGGAGTCCCTTGGAATAA
CCCCTTGGCGGCCCGTTCACTTACTCATCTCGCGCTTGTTCCCAACTCGT
TATCCTACAGGCCAGGCTCGGTGTAGACGTGGAAGGGGTGTTCCGGCGTC
ACGATCCGGACCAATCCGGGTCCATTCTTCGGTCAGACTTTGTACAGGCT
GTCATGGAGCTTGGCGTAGGGCTATTGGATAGCTCAAACTCACGGTGAGC
TACTCGTGCAGTACAGCCGTACGTCGGTGGCATTTGGTATTAACAATGTC
AAAGCTTGTACTGCAGTACCGTACGGCGAGAAATTGGGCCTTGACTTGGG
CCTAGAGGCTGGAATGCAAGAAATACGTTTTTTTCTTCATCCTGCTTGTT
TGTCGCATCCGCATCTACCAGACACGGAAACCGTCTCGCCACCTCGACGG
GCACAGCCGACCCGGTCCGAAGGAGACAGCTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig770:23677..24310-

>mRNA_E_fasciculatus_S2_contig770.15875.1 ID=mRNA_E_fasciculatus_S2_contig770.15875.1|Name=mRNA_E_fasciculatus_S2_contig770.15875.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:23677..24310- (Ectocarpus fasciculatus EfasUO2)
AATAAGCCAGAGGCAACGTACGAATACTCACTAGATCCGGACACAAAAGC
CGCAGAGAAGAAACTGCGCAGGGTGGTCGCAAAGCAGGCCAGGCTCGGTG
TAGACGTGGAAGGGGTGTTCCGGCGTCACGATCCGGACCAATCCGGGTCC
ATTCTTCGGTCAGACTTTGTACAGGCTGTCATGGAGCTTGGCGTAGGGCT
ATTGGATAGCTCAAACTCACGACACGGAAACCGTCTCGCCACCTCGACGG
GCACAGCCGACCCGGTCCGAAGGAGACAGCTC
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