mRNA_E_fasciculatus_S2_contig77.15870.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig77.15870.1
Unique NamemRNA_E_fasciculatus_S2_contig77.15870.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig77.15870.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.110e-39
Identity = 149/374 (39.84%), Postives = 197/374 (52.67%), Query Frame = 1 
Query:   25 MFKRAKVLLPASRRAARAAKDLAEREEIEIELEAAFRSKMVVWGVLFTGLVLVMVLGMALLARRWSKRQAHRESALNHALEESRAETAAATDKTTMAEAKKETARSACCGYHRAFVERREEDSKARAAKARVDHDLQQTNKMVARGEAQKEARRSLGLFEHRRRSQRCHRPQLTLSSRTPAFQ------------HAALQLQRFKILSLNETLVEQHEKTKGAERDLATCRAQRELATSSLESARAXXXXXXXXXXAEXXXXXAASRPACAC-------RQQQQVGEGSETPATDDLELDDEGFGVKQVKEVMLLSMEG-LKPERERHLQRGRASSPXXXXXXXXXXXXXXXXXXXXXXXAIASSNRWAVFAEE 1086
            MF RAKVLLP  RRAA   K+LAER+++E+E  AA++ KM V GV FT L+L++VL M +L R W K QA RESAL H +EESRAETA A +KTT  EA+++TARSAC  +  A VE R +  +A A  ARV   LQ   K++                                                    +   QLQR  + SLN  L+++  KT+ AERD+ATCRA+ E   SSL+SAR           A+      A+R A           Q+QQV +GS      D +LD+EGFG++ +++ ML S+E  +K +     Q+G+ SS              XXXXXXXXX   AS+NRWAVFAE+
Sbjct:    1 MFSRAKVLLPGYRRAA---KELAERQQLELEF-AAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKHQADRESALVHTVEESRAETATANEKTTRFEAQRDTARSACYEFQLAVVENRADSHRASAESARVKTQLQTRTKLLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVQTQLQRLGMRSLNAALMKEEGKTEKAERDMATCRAKYEECRSSLQSAR----EQMARDSAQAEAVKEAARKAATQGKETGPQAQKQQVAQGSHASTASDAKLDEEGFGLQHMEQAMLRSLEEEVKQDGVCDPQQGKVSS--APRAKAIAAPARXXXXXXXXXLPTASTNRWAVFAED 364
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig77.15870.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.740e-23
Identity = 73/149 (48.99%), Postives = 100/149 (67.11%), Query Frame = 1 
Query:    1 SVGNKVAGMFKRAKVLLPASRRAARAAKDLAEREEIEIELEAAFRSKMVVWGVLFTGLVLVMVLGMALLARRWSKRQAHRESALNHALEESRAETAAATDKTTMAEAKKETARSACCGYHRAFVERREEDSKARA--AKARVDHDLQQT 441
            +VG+K+AGMF RAKVLLP  RRAA   K+LAER+++ +E  AA++ KM V GV FT L+L++VL M +L R W KRQA RESAL H +EESRAETA A +KT + EA+++  R      + A ++  E+  KA    A  R  +D++ T
Sbjct:    6 NVGSKIAGMFSRAKVLLPGYRRAA---KELAERQQLGLEF-AAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATANEKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRAT 150
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig77.15870.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.640e-8
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 SVGNKVAGMFKRAKVLLPASRRAARAAKDLAEREEIEIELEAAFRSKMVVWGVLFTGLVLVMVLGMALL 207
            S GNK+  MF   K LL ASRR AR    LAER+++E ELE+A++S M VWGV+F    L M L MA+L
Sbjct:   16 SAGNKITSMFSTVKALLTASRRTAR---QLAERQKLESELESAYKSTMAVWGVIFMASDLGMALVMAML 81
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig77.15870.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.110e-3939.84protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.740e-2348.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.640e-853.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig77contigE_fasciculatus_S2_contig77:46222..49422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1263
Hectar predicted targeting categorysignal anchor
Exons7
Cds size1239
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig77.15870.1prot_E_fasciculatus_S2_contig77.15870.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig77 46222..49398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842432.6658823-CDS-E_fasciculatus_S2_contig77:46221..463371696842432.6658823-CDS-E_fasciculatus_S2_contig77:46221..46337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 46222..46337 -
1696842432.6761293-CDS-E_fasciculatus_S2_contig77:46617..467581696842432.6761293-CDS-E_fasciculatus_S2_contig77:46617..46758Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 46618..46758 -
1696842432.6893435-CDS-E_fasciculatus_S2_contig77:47169..474041696842432.6893435-CDS-E_fasciculatus_S2_contig77:47169..47404Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 47170..47404 -
1696842432.69908-CDS-E_fasciculatus_S2_contig77:47881..479591696842432.69908-CDS-E_fasciculatus_S2_contig77:47881..47959Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 47882..47959 -
1696842432.7083051-CDS-E_fasciculatus_S2_contig77:48243..484551696842432.7083051-CDS-E_fasciculatus_S2_contig77:48243..48455Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 48244..48455 -
1696842432.7177408-CDS-E_fasciculatus_S2_contig77:48551..487021696842432.7177408-CDS-E_fasciculatus_S2_contig77:48551..48702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 48552..48702 -
1696842432.7270923-CDS-E_fasciculatus_S2_contig77:49092..493981696842432.7270923-CDS-E_fasciculatus_S2_contig77:49092..49398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig77 49093..49398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842432.7374172-UTR-E_fasciculatus_S2_contig77:49398..494221696842432.7374172-UTR-E_fasciculatus_S2_contig77:49398..49422Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig77 49399..49422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig77.15870.1

>prot_E_fasciculatus_S2_contig77.15870.1 ID=prot_E_fasciculatus_S2_contig77.15870.1|Name=mRNA_E_fasciculatus_S2_contig77.15870.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=413bp
MFKRAKVLLPASRRAARAAKDLAEREEIEIELEAAFRSKMVVWGVLFTGL
VLVMVLGMALLARRWSKRQAHRESALNHALEESRAETAAATDKTTMAEAK
KETARSACCGYHRAFVERREEDSKARAAKARVDHDLQQTNKMVARGEAQK
EARRSLGLFEHRRRSQRCHRPQLTLSSRTPAFQHAALQLQRFKILSLNET
LVEQHEKTKGAERDLATCRAQRELATSSLESARASLRSATASLKAEAEAA
RAASRPACACRQQQQVGEGSETPATDDLELDDEGFGVKQVKEVMLLSMEG
LKPERERHLQRGRASSPPRAKKKAAAPGARRKGKKNKPPPAIASSNRWAV
FAEEDDENDHEDEHEDEGEGKGAKGATPAAGTPVTSPPGRARTRGKSPSP
SRRRANNGREES*
back to top

mRNA from alignment at E_fasciculatus_S2_contig77:46222..49422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig77.15870.1 ID=mRNA_E_fasciculatus_S2_contig77.15870.1|Name=mRNA_E_fasciculatus_S2_contig77.15870.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig77:46222..49422- (Ectocarpus fasciculatus EfasUO2)
AGCGTTGGTAACAAGGTTGCGGGCATGTTTAAGCGGGCTAAGGTCCTGCT
CCCGGCGTCCCGCCGGGCGGCGAGGGCGGCGAAAGATTTGGCAGAGAGGG
AGGAGATAGAAATAGAACTGGAGGCAGCGTTTAGGTCGAAGATGGTCGTA
TGGGGCGTTCTGTTCACGGGCTTGGTCCTGGTCATGGTCCTCGGCATGGC
ATTGCTGGCGAGGCGGTGGAGCAAGCGTCAAGCCCACCGTGAGTCGGCCC
TGAATCACGCTCTTGAAGAATCGAGGGCAGAAACAGCAGCGGCCACCGAC
AAGACAACAATGGCGGAAGCCAAGAAAGAGGTGAGTGCTTTTCCAGCAGG
GTTTCCCGCCGCATACACGTCAGGCCAAGCCGGGCCGGCAGAGCTGTTTC
TTCTAAAGAAGGACACTCTTCATCGATAACTCACCCCGGTGTCAGTTTCC
AATACACTTCTTCTTCACAATTATCCGCACGTCTTCCACATCCAGCCGCT
CTTTCTTTCGCGGATCGTTAATTTACGGACTGAACGACATGTGTGGAACG
TTCTCCAACTCGTTTGAGTATATTCTAAAGGGTGTTCCTGGTGTCCCCAA
AAGGCTGTTCTCCCTTGAAGATGGCGTGGACATGATCACGTGTCGTCAAA
AGATGCATGGACCGAGTAAGCCCCGGCGCCCGCCCCCCACATACGTGCTG
TACGGTTCGGTTTCCCGCAGACCGCGCGCTCGGCATGCTGCGGGTACCAC
CGTGCGTTCGTGGAGAGGAGGGAAGAGGACAGCAAGGCCAGGGCTGCAAA
GGCGCGGGTTGATCACGACTTGCAGCAGACGAACAAGATGGTCGCAAGGG
GGGAAGCCCAGAAGGAGGCAAGTGCTGTGACAGCGTGTCGCACGGTCTGA
TTTTCACACAACGATGTGCGTTCAGCTGAGCGGTTACTGTGTGCAGCTAC
ATATTGGTACACATGAGGACGGTCTCTTGGCTTGTTTGAACACCGCCGTC
GTTCCCAACGTTGTCACCGTCCGCAACTAACTCTCTCCTCCCGCACCCCC
GCCTTCCAACACGCTGCTCTGCAGCTCCAGCGCTTCAAAATACTTTCGTT
GAACGAGACCTTAGTCGAGCAGCACGAGAAGACCAAAGGGGCTGAACGCG
ACTTGGCGACATGTCGTGCTCAGCGCGAGGTACGTGCAACGCTTTGATGG
AAGAGTGTCTAGTATCTCGATGTAGACGAGAGCCGCTCGCACAGCACCAA
TAGAGTGGGCCCCGATGGAACACAGCCGTGATGGTCAGTCGATACGGTGG
GGTGGACATGATTTCTTGCACCTCTCGGTGAAGCGTTTCAACCTGGTATG
TTATGTGGCAGTTGCTCCTCTGCCATGTGCTACGTTAACATCTTACTCTC
TAAGTGTCTCCCAGGAGGTTTTGTCTAACACTCCACCCCTCACCCCTCTC
CCACGCTTCTCAGCTGGCCACCTCTTCACTAGAGTCTGCGAGGGCCTCCC
TACGGTCTGCGACAGCTTCTCTGAAGGCCGAGGCCGAGGCTGTCTGCAAG
GCGAAGAAGGCCCTCAGCGAAGCCGACAAGGAGATCCGCAACTTACGGGG
GGTGGTGAGCAGTCATATGCAACATGCTTTTGTCATCGCGCAATTTTGGT
CTCTTCCTCATCGCCATACGCAGCCTTCTGAAATCGCATTCACCCGCGCC
AGCTCTTTTTCGCACAAACAAGCCATGAAATGACAACACGACATTGAGAG
GCGGAACAACGGCAACCCAAAACAAAACGGTGCACGCGCATAAATTATGT
GCTGGATATGTTGCGTTTCCGACTTTCAACTCCTGCGCTTTCTCTCCCAT
TCATCATGTTGTCTCGTTCTATGTCGGGTGGCCACACACTACACGACTGC
ATAGGTCGTTGACAAGGCCGACGAAGTCAGTGCCCTGAAGGGGAGGCTTG
TCGAGGAACAAGCACAAGGGCGGGCTCTATGGGCCCAGTTGGAGGGTACA
ATCCTCCAACGCGACCAGGCCAGGGCGGCATCTCGGCCAGCCTGTGCTTG
CCGCCAGCAGCAGCAAGTCGGCGAGGGCTCCGAAACGCCCGCGACCGACG
ACCTCGAGTTAGACGACGAAGGATTCGGCGTCAAGCAAGTGAAGGAGGTG
ATGCTCCTCTCCATGGAAGGGCTCAAGCCGGAGCGGGAGCGACACCTGCA
GCGGGGCAGGGCATCATCGCCACCGCGAGCCAAGAAGAAGGCAGCAGCAC
CCGGTAAGCACACGCATTTTTTGTCGCAGTATGAATGTCGTAAACCGACC
GTTGTAGACCTGGTCCCCAACGGGTCCTGAACACGGCCCCCTGATACTAC
AGTAGGGTATGCTCGGTCTCGGTAAAAAAAAAGGGTTTTGGTGATGCAGA
CGGCGGGAAAGCACACCCGACGTGCATACCGGAGCGAGTGAATCATTCAA
CGTGCTCAAGAGTTCTGAACGGAATCTACATACGTAGTCGACCAGCGTGC
CGTCGAAACCAAACATGTGGCGCAACACTCTGTAGTACGATGTACAGAGA
ATGTGATCCGGCTGCTTGGGCAGCAGCACCAATGGTGGTCTGGCCACAGT
CAACCCAGGCGTTCGGACCAACCCCTAAACCACCTACTACCCACTTCTTC
CTCTATGGTGCCAGGCGCGAGGAGAAAGGGCAAGAAAAACAAGCCCCCCC
CCGCCATAGCGTCAAGCAACCGATGGGCGGTTTTCGCTGAAGAGGATGAC
GAGAACGACCATGAGGACGAGCACGAGGACGAGGGCGAGGGCAAGGGAGC
AAAAGGTGAGCTCATTTCTGGCTTCTTCTGGAGTTCGGCCCCCTCGGGGG
CCAGGGCCACCCTCTCTGCCCGGCACGCCGCCTTCGTGTGGTCGGTGAAC
ATCTTTCCCGTTCCGTCCCGGCTTTGTCAGGGTCGCGACGTTCTCTGCAG
CCGGTGAAGTGAAAGTGACTATGTAGCTGTCCGTTTGTGTGATCAAGAGC
AAGTTCCTCTGCATTCGCCCTCCTCCGTTGTATTCGCCCCTGCACTCACT
CTCCTTCACCCGTTTCCCCACGCCGAACGTTGCAGGAGCAACGCCCGCCG
CCGGCACTCCCGTCACGTCGCCCCCCGGCAGGGCTCGAACCCGCGGCAAG
TCCCCGAGTCCGAGTCGCCGCCGGGCCAACAATGGACGGGAAGAGTCCTA
G
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig77:46222..49422-

>mRNA_E_fasciculatus_S2_contig77.15870.1 ID=mRNA_E_fasciculatus_S2_contig77.15870.1|Name=mRNA_E_fasciculatus_S2_contig77.15870.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1239bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig77:46222..49422- (Ectocarpus fasciculatus EfasUO2)
ATGTTTAAGCGGGCTAAGGTCCTGCTCCCGGCGTCCCGCCGGGCGGCGAG
GGCGGCGAAAGATTTGGCAGAGAGGGAGGAGATAGAAATAGAACTGGAGG
CAGCGTTTAGGTCGAAGATGGTCGTATGGGGCGTTCTGTTCACGGGCTTG
GTCCTGGTCATGGTCCTCGGCATGGCATTGCTGGCGAGGCGGTGGAGCAA
GCGTCAAGCCCACCGTGAGTCGGCCCTGAATCACGCTCTTGAAGAATCGA
GGGCAGAAACAGCAGCGGCCACCGACAAGACAACAATGGCGGAAGCCAAG
AAAGAGACCGCGCGCTCGGCATGCTGCGGGTACCACCGTGCGTTCGTGGA
GAGGAGGGAAGAGGACAGCAAGGCCAGGGCTGCAAAGGCGCGGGTTGATC
ACGACTTGCAGCAGACGAACAAGATGGTCGCAAGGGGGGAAGCCCAGAAG
GAGGCAAGACGGTCTCTTGGCTTGTTTGAACACCGCCGTCGTTCCCAACG
TTGTCACCGTCCGCAACTAACTCTCTCCTCCCGCACCCCCGCCTTCCAAC
ACGCTGCTCTGCAGCTCCAGCGCTTCAAAATACTTTCGTTGAACGAGACC
TTAGTCGAGCAGCACGAGAAGACCAAAGGGGCTGAACGCGACTTGGCGAC
ATGTCGTGCTCAGCGCGAGCTGGCCACCTCTTCACTAGAGTCTGCGAGGG
CCTCCCTACGGTCTGCGACAGCTTCTCTGAAGGCCGAGGCCGAGGCTGCC
AGGGCGGCATCTCGGCCAGCCTGTGCTTGCCGCCAGCAGCAGCAAGTCGG
CGAGGGCTCCGAAACGCCCGCGACCGACGACCTCGAGTTAGACGACGAAG
GATTCGGCGTCAAGCAAGTGAAGGAGGTGATGCTCCTCTCCATGGAAGGG
CTCAAGCCGGAGCGGGAGCGACACCTGCAGCGGGGCAGGGCATCATCGCC
ACCGCGAGCCAAGAAGAAGGCAGCAGCACCCGGCGCGAGGAGAAAGGGCA
AGAAAAACAAGCCCCCCCCCGCCATAGCGTCAAGCAACCGATGGGCGGTT
TTCGCTGAAGAGGATGACGAGAACGACCATGAGGACGAGCACGAGGACGA
GGGCGAGGGCAAGGGAGCAAAAGGAGCAACGCCCGCCGCCGGCACTCCCG
TCACGTCGCCCCCCGGCAGGGCTCGAACCCGCGGCAAGTCCCCGAGTCCG
AGTCGCCGCCGGGCCAACAATGGACGGGAAGAGTCCTAG
back to top