mRNA_E_fasciculatus_S2_contig77.15865.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig77.15865.1
Unique Name	mRNA_E_fasciculatus_S2_contig77.15865.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig77.15865.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)

HSP 1 Score: 629 bits (1622), Expect = 3.810e-222
Identity = 439/491 (89.41%), Postives = 444/491 (90.43%), Query Frame = 1

Query:    1 MSCEVDMEMHSSSQDYQPKDVASSEVSKQISNGFAAWWRPRAILRASLADVSLSTTNTSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQFATQLKPKIQHHNNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQDLLGSSSGKLKSLKLAPMGCSEEQPAKHTAAAAAAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXXTPSKPPRPNHHAGAGVDARFDVASEEGGMGTLGEKATAQAGVGKGSWREEAMDDETAAEEGGQVAAGRMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEAFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRRVACHPEDIDSSPAPALRECASAIKEAVRDEGVKDKDTHEVVFVGRPMWELVSPVLDFSAKAGGGAGASG 1473
            M+CEVDME HSSSQDYQPKDV  SEVSKQ SNGFA WWRPR+ILRASLADVSLSTTNTS V XXXXXXXXXXXXXXXXXXXXXXXXXXX             QQQF TQLKPKIQHH+NWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PEQ LLGSSSGKLKSLKLAP+G   EQ AKHTAAAAA VDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXX      R NHHAGA V ARF VASE GGMGTLGEKATAQAGVG+GSWREE MDDETAAEEGGQVAA RMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEE FVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTR   CHPEDIDSSPAPALRECASAIKEAVRDEGV DKDTHEVVFVGRPMWELVSPVLD SAKAGGGAGASG
Sbjct:    1 MACEVDMEKHSSSQDYQPKDVGHSEVSKQNSNGFA-WWRPRSILRASLADVSLSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLFDVAAAAQ-QQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PEQGLLGSSSGKLKSLKLAPIG--SEQLAKHTAAAAA-VDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGA-VGARFAVASE-GGMGTLGEKATAQAGVGEGSWREEGMDDETAAEEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTR---CHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLSAKAGGGAGASG 480

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig77.15865.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig77.15865.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	3.810e-222	89.41	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig77	contig	E_fasciculatus_S2_contig77:3282..6674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	1476
Hectar predicted targeting category	other localisation
Exons	5
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-00_001570.1
Cds size	1476

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842432.0092711-CDS-E_fasciculatus_S2_contig77:3281..4217	1696842432.0092711-CDS-E_fasciculatus_S2_contig77:3281..4217	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig77 3282..4217 +
1696842432.020211-CDS-E_fasciculatus_S2_contig77:4307..4378	1696842432.020211-CDS-E_fasciculatus_S2_contig77:4307..4378	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig77 4308..4378 +
1696842432.0332131-CDS-E_fasciculatus_S2_contig77:4993..5060	1696842432.0332131-CDS-E_fasciculatus_S2_contig77:4993..5060	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig77 4994..5060 +
1696842432.0476706-CDS-E_fasciculatus_S2_contig77:5553..5750	1696842432.0476706-CDS-E_fasciculatus_S2_contig77:5553..5750	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig77 5554..5750 +
1696842432.05897-CDS-E_fasciculatus_S2_contig77:6469..6674	1696842432.05897-CDS-E_fasciculatus_S2_contig77:6469..6674	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig77 6470..6674 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig77.15865.1	prot_E_fasciculatus_S2_contig77.15865.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig77 3282..6674 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig77:3282..6674+
coding sequence from alignment at E_fasciculatus_S2_contig77:3282..6674+

protein sequence of mRNA_E_fasciculatus_S2_contig77.15865.1

>prot_E_fasciculatus_S2_contig77.15865.1 ID=prot_E_fasciculatus_S2_contig77.15865.1|Name=mRNA_E_fasciculatus_S2_contig77.15865.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=492bp
MSCEVDMEMHSSSQDYQPKDVASSEVSKQISNGFAAWWRPRAILRASLAD
VSLSTTNTSAVSSSNNSTSSPPLPPHQDGGGGGGGGEGESSPSSLFDVAA
AEQQQFATQLKPKIQHHNNWTRGSRDGTEAPSPDEDDATNNRHSDTDSAA
AAASSSLLPAYNNDSARRRRPEQDLLGSSSGKLKSLKLAPMGCSEEQPAK
HTAAAAAAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQEQQDEQQRRRLDE
QRRTPSKPPRPNHHAGAGVDARFDVASEEGGMGTLGEKATAQAGVGKGSW
REEAMDDETAAEEGGQVAAGRMRALTSGQGEFLARRGFAAGLVSHFLEET
NCEFRVLQGGASCGMNAQQLEDAAARLEEAFVPAVKRLRARSSVDVVLDS
LFQGADDAGDFVVRFEVTLTRRVACHPEDIDSSPAPALRECASAIKEAVR
DEGVKDKDTHEVVFVGRPMWELVSPVLDFSAKAGGGAGASG*

mRNA from alignment at E_fasciculatus_S2_contig77:3282..6674+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig77.15865.1 ID=mRNA_E_fasciculatus_S2_contig77.15865.1|Name=mRNA_E_fasciculatus_S2_contig77.15865.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig77:3282..6674+ (Ectocarpus fasciculatus EfasUO2)
ATGTCATGCGAGGTGGACATGGAAATGCACAGCAGCAGTCAAGACTACCA
ACCAAAGGACGTGGCTAGTAGCGAAGTTTCAAAACAAATCAGCAACGGCT
TTGCTGCCTGGTGGAGGCCTCGTGCTATCCTCCGAGCATCCCTTGCCGAT
GTCTCCCTCAGCACCACCAACACGAGCGCCGTCAGCAGCAGCAACAACAG
CACTAGTTCCCCTCCGCTGCCGCCGCACCAAGACGGCGGCGGCGGCGGCG
GCGGCGGGGAGGGAGAGTCGTCGCCCTCCTCCCTGTTCGACGTAGCAGCG
GCAGAACAACAGCAGTTCGCGACGCAGCTCAAGCCCAAGATCCAGCACCA
CAACAACTGGACCAGGGGCAGCAGGGACGGCACCGAGGCACCGTCTCCCG
ACGAGGACGATGCCACCAACAACCGCCACAGTGACACCGATTCGGCTGCT
GCTGCTGCTTCGTCGTCGCTCCTGCCGGCGTACAACAACGACTCGGCCCG
GCGGAGACGACCAGAGCAAGACCTCCTCGGATCCTCGTCCGGCAAGCTCA
AGTCCCTCAAGCTCGCCCCGATGGGCTGCTCGGAGGAGCAGCCCGCGAAG
CACACAGCAGCAGCAGCAGCAGCAGTGGATTCGGATCGCCCTGGGACCCC
TGTCAGGGGTGGCGGTATTGGCAGCACCTGGTGCGTGGGCCCTCTGCAGG
TTCGTCGGCAGGAGCAGCAGGACGAGCAGCAGCGGCGGCGGTTGGACGAG
CAACGGCGAACGCCTTCCAAGCCCCCGCGGCCTAACCACCACGCCGGCGC
CGGCGTGGACGCCCGCTTCGACGTGGCTAGCGAAGAGGGGGGCATGGGTA
CACTCGGCGAGAAGGCTACGGCGCAAGCGGGGGTGGGAAAGGGAAGCTGG
AGGGAGGAGGCCATGGACGACGAGACCGCGGCAGAGGTTAGCACTACCAG
CGTCGTCTACGACGTCCTGGCGGTGGATCGGGGTTGCGGGTACTGCGACA
CCTCCGTGGTGCCGTTCCCCGTGGAGGAGGGGGGCCAGGTAGCGGCGGGG
CGGATGAGAGCTTTGACCTCCGGGCAAGGGGAATTTCTGGCGAGAAGGTG
AGTCGCTGGGTGCGTACGTGCTCATGTTTGCGTGATTGTTTGTGGGGGGT
TGAAATGTGGAACGTACATACATATAGCAGACACCCACACGTACACCGTA
TTCGCAGGGGGCCAGGGCGGAAATCGCGGCCGAGTTTCGCTGCATCTCTC
GTAGCGCCCCGTGGTGGCTGGGAGCTTGTTGTGCAACAGTGTTGCGTTCG
GGTGCAGACATCTGTCGGATAGTCGATGTATGTACGTTGATGTTCTCGGC
AAGGAGACTTGGGGTCGGTCGTCTTGGCACAAAGGCGCCCTCCTCCTCTA
TGCCTGCACGCTACAGTAGTGAGGGTTTTTCTTTGCGGCGAATTTTTCAA
TCGTTCTCTCGCACTAACACCCAACACCGCTTGTTCCTCAAGTAACCGTA
GAGAATAGAGAATAGAGCCGGACCCACCACCTTACCTTACCTTTTGGCTA
TTCTGATGCTGTTCATAAATGTGCCGGCAATGACGAGAGCAACAGACAGT
GTGACGATCCCTTGGTGTTCGTAGTGCCTGCTTCTCTGACCGTCCCCTCG
ACACCCGCGTCTGTCGCTCCGCCTACTGCTGTTCCCTGCTGGTGTGTGTT
TTCCACGAACAGAGGCTTTGCCGCCGGTCTGGTGTCACATTTCCTGGAGG
AGACGAACTGCGAGTTCAGGGTTCTCCAGGTGCGTAAGCGTTCTCTGTGT
ATGTCGGTTTGCCGTGTAAGATGAATCCCAACCTTCCCGTAGGTACTTTC
CGGGAGGCAATATTGTAACATATCTTGATGCACGAACCATCTTGATTGAC
GGACGTTGAAGTCGTTCCGGTTGTCGCGGCAGGTGATGCCGGTGCATTAT
TGACGAACTTTATCCTTTACCCTGTGGTTTCTCCTTTATATGACGTCATC
CTGTGGTCCTGCTGCTTCCTTTATTTTTGGCTCCTTCTCTGGCGCTCTGT
GGTTATGCAACGATGAACGCAACATCATTATCTCAAATTGGAATCGGCGG
TAAGTGAGTGCGAGTCTTGCTTCGAAAGCATGGCAATCTCACGATTTTTC
AGTACACCCTTTGACCTCATGCTCACTCCTTCTTCCGCGCATTTGTCTCT
CATGACGGCCTCAAGTTCGACACGCCTTCCTTTTCCCCGTGCTTCGCTTG
GCTCGCCTTGGCACCGCCGCAGGGGGGCGCATCCTGCGGGATGAACGCGC
AGCAGCTGGAAGATGCCGCCGCCCGCCTGGAAGAAGCCTTCGTGCCCGCC
GTGAAGCGGCTGAGGGCACGGTCGTCGGTGGACGTGGTGCTGGACTCCCT
CTTCCAGGGCGCCGACGATGCCGGAGATTTCGTCGTCCGCTTCGAGGTTA
CACTCACCAGGCGAGTGGCGTGCGGTGCGGTGTGGCGTGTTGTGATGCAT
TCGAGCAGCGGTCTAGCAGTAGTTGTGCGTGCCCTGTAGTCTGGCCAGAC
TTGTACGCCGATGAACACCTCTCTCTCTGGTGGCAACGGAGTGTAACCCC
GGATATACTGTACGCGAAAGAAAGCTGAAAACACTTGTTGTGGTGTAGTC
AAGCAGTGGTCTAACCGCGCATGCCTTTTTCAAACATACGCCTTGTAAGC
CGAATATCACCCCCCTCTCTATTAGTTGCAGTGGAGTGGGACCGTACGCG
AAAGAAAGCTGAATATTATGGCACTTCAAAGCCGAATCCTCCCGAAACAA
GAATCATCCTCTTTTGTTTTTTCTGAACATCACCGGCGGTGGGTCTGGGC
GCCACACGTGATATTCTCCACCACTCGCTTTTTGAACGTGGAGCTGGTAG
GTAACACTGGCTCCCTGACCCCAAGGGACCAACCACGTGGGCGAGAAATA
ACTCCGACGTAGATCACGGGCTTCGGTCACCCGCCATCCTTCGCTCGCGC
ACCTTCCTTTGCTGCAACACTCCCACTCCCACCCACTCCACGATTTCCCC
AACAAATTTACAACGAAAACGGTATCGGCAACTCATAATGATAACTACGG
CAGCACTGCTCCTTTAAACTTTAAACGGCTACTTTGCTGTGTGCCTGACA
CGACCAAATGCCCATCGATGGCAACGTTGACGATGCAGGTGCCACCCGGA
AGACATAGACTCGAGCCCCGCTCCCGCCCTTCGAGAGTGCGCGTCAGCTA
TCAAAGAGGCTGTCAGGGACGAGGGGGTAAAGGACAAAGACACGCACGAG
GTAGTGTTCGTGGGCAGACCCATGTGGGAGCTGGTGTCACCGGTGTTGGA
CTTCTCGGCCAAGGCCGGGGGGGGTGCTGGAGCTTCTGGGTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig77:3282..6674+

>mRNA_E_fasciculatus_S2_contig77.15865.1 ID=mRNA_E_fasciculatus_S2_contig77.15865.1|Name=mRNA_E_fasciculatus_S2_contig77.15865.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1476bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig77:3282..6674+ (Ectocarpus fasciculatus EfasUO2)
ATGTCATGCGAGGTGGACATGGAAATGCACAGCAGCAGTCAAGACTACCA
ACCAAAGGACGTGGCTAGTAGCGAAGTTTCAAAACAAATCAGCAACGGCT
TTGCTGCCTGGTGGAGGCCTCGTGCTATCCTCCGAGCATCCCTTGCCGAT
GTCTCCCTCAGCACCACCAACACGAGCGCCGTCAGCAGCAGCAACAACAG
CACTAGTTCCCCTCCGCTGCCGCCGCACCAAGACGGCGGCGGCGGCGGCG
GCGGCGGGGAGGGAGAGTCGTCGCCCTCCTCCCTGTTCGACGTAGCAGCG
GCAGAACAACAGCAGTTCGCGACGCAGCTCAAGCCCAAGATCCAGCACCA
CAACAACTGGACCAGGGGCAGCAGGGACGGCACCGAGGCACCGTCTCCCG
ACGAGGACGATGCCACCAACAACCGCCACAGTGACACCGATTCGGCTGCT
GCTGCTGCTTCGTCGTCGCTCCTGCCGGCGTACAACAACGACTCGGCCCG
GCGGAGACGACCAGAGCAAGACCTCCTCGGATCCTCGTCCGGCAAGCTCA
AGTCCCTCAAGCTCGCCCCGATGGGCTGCTCGGAGGAGCAGCCCGCGAAG
CACACAGCAGCAGCAGCAGCAGCAGTGGATTCGGATCGCCCTGGGACCCC
TGTCAGGGGTGGCGGTATTGGCAGCACCTGGTGCGTGGGCCCTCTGCAGG
TTCGTCGGCAGGAGCAGCAGGACGAGCAGCAGCGGCGGCGGTTGGACGAG
CAACGGCGAACGCCTTCCAAGCCCCCGCGGCCTAACCACCACGCCGGCGC
CGGCGTGGACGCCCGCTTCGACGTGGCTAGCGAAGAGGGGGGCATGGGTA
CACTCGGCGAGAAGGCTACGGCGCAAGCGGGGGTGGGAAAGGGAAGCTGG
AGGGAGGAGGCCATGGACGACGAGACCGCGGCAGAGGAGGGGGGCCAGGT
AGCGGCGGGGCGGATGAGAGCTTTGACCTCCGGGCAAGGGGAATTTCTGG
CGAGAAGAGGCTTTGCCGCCGGTCTGGTGTCACATTTCCTGGAGGAGACG
AACTGCGAGTTCAGGGTTCTCCAGGGGGGCGCATCCTGCGGGATGAACGC
GCAGCAGCTGGAAGATGCCGCCGCCCGCCTGGAAGAAGCCTTCGTGCCCG
CCGTGAAGCGGCTGAGGGCACGGTCGTCGGTGGACGTGGTGCTGGACTCC
CTCTTCCAGGGCGCCGACGATGCCGGAGATTTCGTCGTCCGCTTCGAGGT
TACACTCACCAGGCGAGTGGCGTGCCACCCGGAAGACATAGACTCGAGCC
CCGCTCCCGCCCTTCGAGAGTGCGCGTCAGCTATCAAAGAGGCTGTCAGG
GACGAGGGGGTAAAGGACAAAGACACGCACGAGGTAGTGTTCGTGGGCAG
ACCCATGTGGGAGCTGGTGTCACCGGTGTTGGACTTCTCGGCCAAGGCCG
GGGGGGGTGCTGGAGCTTCTGGGTGA