mRNA_E_fasciculatus_S2_contig7670.15841.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7670.15841.1
Unique NamemRNA_E_fasciculatus_S2_contig7670.15841.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7670.15841.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.880e-117
Identity = 191/195 (97.95%), Postives = 192/195 (98.46%), Query Frame = 1 
Query:    1 QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQALHLADTQRRVYVVVQTHLQRGDFVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGV---TDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDNSGSGGGGSD 576
            QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQALHLADTQRRVYVVVQTHLQRGDFVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGV   TDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPED+SGSGGGGSD
Sbjct: 6677 QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQALHLADTQRRVYVVVQTHLQRGDFVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDSSGSGGGGSD 6871
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BLAST of mRNA_E_fasciculatus_S2_contig7670.15841.1 vs.
Match: VPS13_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.040e-58
Identity = 114/138 (82.61%), Postives = 117/138 (84.78%), Query Frame = 1 
Query:  172 QALHLADTQRRVYVVVQTHLQRGDFVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGV---TDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDNSGSGGGGSD 576
            QALHLADTQRRVYVVVQTHLQRG+FVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGV   TDLR+DVEIGRLDLQLGGLIDCCSFRARSEYQ     S             GPED+SGSGGGGSD
Sbjct:    3 QALHLADTQRRVYVVVQTHLQRGNFVWKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRADVEIGRLDLQLGGLIDCCSFRARSEYQARIVHSK------------GPEDSSGSGGGGSD 128
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BLAST of mRNA_E_fasciculatus_S2_contig7670.15841.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.040e-28
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQALHLADT 195
            QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQA  +  T
Sbjct: 1070 QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGGVLRIQPLQARKMIST 1134
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7670.15841.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.880e-11797.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
VPS13_C1.040e-5882.61domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
C23.040e-2892.31domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7670contigE_fasciculatus_S2_contig7670:3722..6205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score382.1
Seed ortholog evalue1.5e-103
Seed eggNOG ortholog2880.D7G8Y9
Model size578
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size576
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842429.6666675-CDS-E_fasciculatus_S2_contig7670:3721..38201696842429.6666675-CDS-E_fasciculatus_S2_contig7670:3721..3820Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7670 3722..3820 -
1696842429.6890337-CDS-E_fasciculatus_S2_contig7670:4622..47461696842429.6890337-CDS-E_fasciculatus_S2_contig7670:4622..4746Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7670 4623..4746 -
1696842429.700637-CDS-E_fasciculatus_S2_contig7670:5177..53561696842429.700637-CDS-E_fasciculatus_S2_contig7670:5177..5356Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7670 5178..5356 -
1696842429.7106307-CDS-E_fasciculatus_S2_contig7670:5806..59471696842429.7106307-CDS-E_fasciculatus_S2_contig7670:5806..5947Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7670 5807..5947 -
1696842429.7276678-CDS-E_fasciculatus_S2_contig7670:6172..62051696842429.7276678-CDS-E_fasciculatus_S2_contig7670:6172..6205Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7670 6173..6205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7670.15841.1prot_E_fasciculatus_S2_contig7670.15841.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7670 3722..6205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7670.15841.1

>prot_E_fasciculatus_S2_contig7670.15841.1 ID=prot_E_fasciculatus_S2_contig7670.15841.1|Name=mRNA_E_fasciculatus_S2_contig7670.15841.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=192bp
QRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGG
VLRIQPLQALHLADTQRRVYVVVQTHLQRGDFVWKSTKANVAAAPTWDRN
QPVCEFKVEALEASGTLSLSVFAEVGVTDLRSDVEIGRLDLQLGGLIDCC
SFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDNSGSGGGGSD
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mRNA from alignment at E_fasciculatus_S2_contig7670:3722..6205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7670.15841.1 ID=mRNA_E_fasciculatus_S2_contig7670.15841.1|Name=mRNA_E_fasciculatus_S2_contig7670.15841.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2484bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7670:3722..6205- (Ectocarpus fasciculatus EfasUO2)
CAGAGGGACCCCCTGTGGAAGTACAAGCAGCAGGTGTGTGCCTGACGAAA
TGCGGACGGGGTTTGAGCAGCAATAAACACCAACGGATCTTGTGAAGTCC
GGTGTCGGTCATGCATTTCTCTGCTTCCATTTTCTTGAGAAACGTTTTGC
CCGCTTTTGTTGGTAGTCCTGCCTCTTGGAGCCGTTGCTGCTTGTTGTCT
CTGTCGCGCTCATTGTCATCTTCTCCTCCGTTGGCATGGTTCATGTTTTG
TCCACCAGGCGTCCATGCTGCCCCTTCTCCAACGGCCGAGCCTGAAGGAC
CTCCTGCGGCACACGAGGGAAGCCGTGGTGTGTGAGATGGACCTTAGCCA
CCAGCGAGTCATGCGGGATGGCGGCGTTCTCCGGATACAGCCTCTCCAGG
CAAGGAAAATTATATCGAAAACATGCGCAGGCGATGGGGCACGTGCTCGT
CCCTCCTGACGGAGGCGTTTTGTGAGCCCGACGTCCTTCGGTGCTGTGCG
TATTGGCCATCAACAGCAATGGGTATTGCTTGCTGCTGCTGCTGCTGCAA
GGGTATTGATTGATTCGTGCTTATTTTATAGAGACTCTCGATTCTTCCGA
GTTGGTATGATATAACAGCGGTCAGGGTCTACCTCAGCCGCCAAGACACG
AAGCCAGCCGTTGATATCTACCGTCGATCATCCAACGTTGATATTTACGG
TACACATTTACGATTTCCCTCCTCCCCCCCCTTCCCCCCCCCCCCCCTTT
TCAACCGGCCTTGATTTCCACCGGCCTCGGTTTCGATGGTAACCTCGATC
ACTCATGTCGCGCCACGGGCCGCCGCGCCGTGTGCTACGCGTGCACCAGG
CGCTGCATCTCGCCGATACACAGCGGCGAGTGTACGTGGTCGTGCAGACC
CATCTGCAGCGGGGGGATTTCGTGTGGAAGAGCACCAAGGCCAACGTCGC
GGCCGCCCCTACCTGGGACCGCAACCAGCCCGTGTGCGAGTTCAAGGTGG
AGGCTTTGGAGGCTTCTGGCACCCTCAGGTACGCCGTGTCATATTTTAGG
TTTGAGTGATATTTGGTGCGATGTACCAGCAGATGTTTGGCTCTTGGTTG
GTATAAGATGTTTTCTGCTTTTGGCTGAACTTGTATTCAGAACGGCTTGG
CAAATATTTTTGTTGCTTTTTTACCGTTGATGTGTTTGTCGAGTGTGGTC
TTCGACTTGGGATCACACCCAACGTGCACATAAATCTATTTTGTCTTCTG
CCCAGGCACGCGTTCCTCTTTGTGGGCCTCGGGTTCAGACGACGTCGGTC
CGACGACTGGCGTGTTGAGCAAACAAATAAGCAAGGACAGAGTATACTAC
CACCAAGCACGAATGGCACTCCTCAACCTGCCCCCGGGTCACCCTTGCTG
CACCAACCCTTAACCTATGTAACCCTACCCAACCCGTACCCCCCACGCCC
GTTCGCCAGCTTGAGCGTTTTCGCCGAGGTGGGCGTGACGGACTTGCGCT
CGGACGTTGAGATCGGCCGCCTTGACCTGCAGCTTGGTGGGCTGATCGAC
TGCTGCTCGTTTAGGGCGAGATCGGAGTACCAGGCAAGGATTGTGCATTC
AAAGGGTATATGGCCATTTTGCGACCCCTCTCAACATGTACGGTTGAAGC
AGCAACTCAAAATTAAGTGACTGTTAGGTGTGCTGTCCCTAACACTCTGT
CTGCGGTTTGGTATGACTCCTGAAGATGTTTCGGCTACGAAGGGGCGTAC
CTTAGAGCAGCACACTTTGACGCGCGCTGCGATTGCACGGATGGTATTGC
GCTGCCGAGGATGCACCAGTGCCTGTGAACATGCCAGGCCGGCGAGTGTC
GGTCTATGGTATTCCATAGGCAACGAAGAATGCGTGCTTCTTGCCGCAGA
GATAACGGCCAGGGGGAAATAATATTGTTCGTGCTTCACGGAGAAACGCA
AGCCCCTCATCTGATACAGTATATACTCGAAGTAGGGCAGAGCACATGTC
CTGCCACCCAACACGAGCAATTGTTTCTTGCGCGACGCCATCACCGAAGA
AAGCATGTGTCTGCAAGAATACCCACAGGTTTATAGGTCATTTTCAGCAC
CTTTCCCTACAACACCCGGTGGTGGCAGTGTTCGACACACCATCTAGCTG
TAGGTCAAGAGAGAGCGCTTCAACGTGCTTTCGTACTTTTGTTTTTTTTT
GCTCGCAGGACTGCTTTTCAACTGTTCCGATATCGATATCGTGCATCACT
GCTGTGTCCCACACCTGCAAGACTGACGACGACTCTCCCCCCATCATATC
TCACCGCTGGGAGACAGACTCTGACGCTCTATACGCCCCCCTCCCCCCTC
GACTCCCCGTCCTCCCTGTCCTTCTCCTACCTCAGCGCTGGTACCCCCTC
TCCCCCCCGGCCCACAAGACGGAAGACGAACAGTTCGGTGCAGGGCCTGA
GGATAATAGTGGCAGCGGTGGCGGCGGGAGCGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7670:3722..6205-

>mRNA_E_fasciculatus_S2_contig7670.15841.1 ID=mRNA_E_fasciculatus_S2_contig7670.15841.1|Name=mRNA_E_fasciculatus_S2_contig7670.15841.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7670:3722..6205- (Ectocarpus fasciculatus EfasUO2)
CAGAGGGACCCCCTGTGGAAGTACAAGCAGCAGGCGTCCATGCTGCCCCT
TCTCCAACGGCCGAGCCTGAAGGACCTCCTGCGGCACACGAGGGAAGCCG
TGGTGTGTGAGATGGACCTTAGCCACCAGCGAGTCATGCGGGATGGCGGC
GTTCTCCGGATACAGCCTCTCCAGGCGCTGCATCTCGCCGATACACAGCG
GCGAGTGTACGTGGTCGTGCAGACCCATCTGCAGCGGGGGGATTTCGTGT
GGAAGAGCACCAAGGCCAACGTCGCGGCCGCCCCTACCTGGGACCGCAAC
CAGCCCGTGTGCGAGTTCAAGGTGGAGGCTTTGGAGGCTTCTGGCACCCT
CAGCTTGAGCGTTTTCGCCGAGGTGGGCGTGACGGACTTGCGCTCGGACG
TTGAGATCGGCCGCCTTGACCTGCAGCTTGGTGGGCTGATCGACTGCTGC
TCGTTTAGGGCGAGATCGGAGTACCAGCGCTGGTACCCCCTCTCCCCCCC
GGCCCACAAGACGGAAGACGAACAGTTCGGTGCAGGGCCTGAGGATAATA
GTGGCAGCGGTGGCGGCGGGAGCGAC
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