mRNA_E_fasciculatus_S2_contig7652.15820.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7652.15820.1
Unique NamemRNA_E_fasciculatus_S2_contig7652.15820.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7652.15820.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7652contigE_fasciculatus_S2_contig7652:1374..3463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.5148113-CDS-E_fasciculatus_S2_contig7652:1375..15431696842427.5148113-CDS-E_fasciculatus_S2_contig7652:1375..1543Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7652 1376..1543 -
1696842427.5339704-CDS-E_fasciculatus_S2_contig7652:3364..34631696842427.5339704-CDS-E_fasciculatus_S2_contig7652:3364..3463Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7652 3365..3463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7652.15820.1prot_E_fasciculatus_S2_contig7652.15820.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7652 1376..3463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7652.15820.1

>prot_E_fasciculatus_S2_contig7652.15820.1 ID=prot_E_fasciculatus_S2_contig7652.15820.1|Name=mRNA_E_fasciculatus_S2_contig7652.15820.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
RSRRRARFQRQQQEERRRLTALGLHSDLSDLSEHRGSRSRCRRKVPTFLG
LWRAGVAVQLVAAQSMGRSKESIQGESENSPDPALTVAT
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mRNA from alignment at E_fasciculatus_S2_contig7652:1374..3463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7652.15820.1 ID=mRNA_E_fasciculatus_S2_contig7652.15820.1|Name=mRNA_E_fasciculatus_S2_contig7652.15820.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2090bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7652:1374..3463- (Ectocarpus fasciculatus EfasUO2)
AGGAGCAGGCGTAGAGCGAGATTTCAACGACAGCAGCAGGAGGAACGGCG
ACGGTTGACAGCGCTGGGGCTGCATTCAGACCTTTCAGACCTTTCAGAGG
TGAGAGTTTCTTTTCTTTTGAACTGATGTAATGATGTAGTCTAATGATGT
AGTCTAATGCACTTGTTCGGTGCTGGGGAAGGTTGGTTGTCGTGGCGGTA
CAACAGTAGAATAGTCTAGCTCTTTGGTTGGCCCTTCCTTGATAGGACGC
GGAGCCAGAGAGAAGGTTTGGCTGAATTTTGTGCTCTAGGTAGCTAGACC
TGTGGCTCATCACGCTTCTCGGGCAGCGGGGCGATAAAGCAATATCGCTG
TGTAGACCACTACTGTCTGTTTGCTTCTATTAATAGGAGTGGAGCAGGAA
GGCAAAGAGGACAACTCCTTCCACATCCTGACGATGTGGGTGTTGGTGTG
TTGTTATTGATGTTCAAGACGAGCAAACCATGAGGCTCAGTAGCAGTAGT
GTAGCCTTCTTTTCTAAAGTCCGGAGTTTGAAGCCAAACGGGCTCGATAT
CTGGAGGTTGGGCCTCAAAATCCGCGATACATACGTAGCACATGCCGATG
CGATATGGGGAGATATATGTAGCCTAATAAGCATCACAGAGGTCCGTGTC
CTGGCGCCCAAACAGCTGAAAAGCAATGTTAGTGCAGTGATAGCACAGCC
GATGGTCCTCACTACTTAAGTCCATCATTTACTTTGTAATCGTAACAGAT
CCTCTAACAAACACCTTCGCATTCTCTTACCTTTACGACGGGCAGCCTAA
CTGCCTGCTGAACTGCTGTAGCGGTGATATTTAGGAGGACTGGGTTTCTG
GACCGGAGAGCCGTTGAGCTTCCGTGCTCTAAACTGCCCTTGCTTTTTAC
CAGCGGCAATTATGCATACGACCACCTTGGAAGACCGCCCGCCGAACGAG
ATACACCACGGCAGTCCAAGAGGGTGTGTCGGAAGTCTTGGCAGCAGTGA
GCTGGGAAGAAAGCCTGCTGGATCCTCCGCAAATAATAATTTTGAGTTTC
TGAAAGCCTATACACACTGAAAGGTTGAAAGGTCTCAGTACTGCCAGCTG
GTACCAATCACTTGCAGTTCTCTGCTGGTTCAACGTCAAGAATATCATTG
TTTTACGCACGATGTCATCAAGTACGTGTGTTGAGATTGCAGTCCACAGG
CACTGTTTACCTGCTGGTCCACAACGTACCAGACTACTGCGTGCTGTAGT
GCTGTAGTACTGTACTGCTGTTGCACCGCTGTTAGGGTGCTCATCTCTTC
GCTGACTATCGGCCGAACCCTTATCCTCACTTTGTCATCTCCACACCGAA
ATTTCCACCGAAGCTTGCTTGCACACGTCATCTTCCGTCTGCTGCCGGAT
CCATAAGCTACTCTTTGTTTTCTCCTGAGCAGAGAGCTTCCTTCTCGCTT
TTGCCAGGCGCAGGCAAGAGCCGACACACAGAGACCCCGTTCGCGAACTG
CTCGCGAGTCTTGCCCTCGAAAGGGGAATGTTGTTGATCCACACAAAATG
GTTTCTTTCTGCTGACAGGTGTTCTTGTGTGTGTTGTGTACTGTTTCTGT
TTTTTCTAATGAAAGCAGGTCAAGTACGAATCTCTATTCACAAATGTATC
TGTCAGAGTCCAGAGGATGTGTGCTCATGTTGCATGGTGTTATATGACCA
ACCTGCACTTTTACTGCACTTTGACGATTCCCCGAGCAGCATACAGCGAT
CTCTCTCTCTCTCTCCCCTTTGGGTAAATACTCAACAAGACGGTTTTGTT
CTCTCCCTCTCTCTGTCTCTCTCTCTCTTTGTCTTCTCTCTCTCTTTGTC
TGTCTGTCTCTCTCTCTCTCTCGGTCTCCCTGTGTGTGTCTGTCTGTCTC
CCTCTCTCTCTGTATGATAGCACCGGGGGTCTCGCTCTCGCTGCCGTCGC
AAGGTCCCGACATTCTTGGGCCTGTGGAGGGCGGGGGTGGCGGTCCAGCT
GGTCGCGGCACAGTCGATGGGACGCAGCAAGGAGTCCATCCAAGGCGAAA
GCGAAAACAGTCCCGACCCTGCGCTGACGGTCGCGACCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7652:1374..3463-

>mRNA_E_fasciculatus_S2_contig7652.15820.1 ID=mRNA_E_fasciculatus_S2_contig7652.15820.1|Name=mRNA_E_fasciculatus_S2_contig7652.15820.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7652:1374..3463- (Ectocarpus fasciculatus EfasUO2)
AGGAGCAGGCGTAGAGCGAGATTTCAACGACAGCAGCAGGAGGAACGGCG
ACGGTTGACAGCGCTGGGGCTGCATTCAGACCTTTCAGACCTTTCAGAGC
ACCGGGGGTCTCGCTCTCGCTGCCGTCGCAAGGTCCCGACATTCTTGGGC
CTGTGGAGGGCGGGGGTGGCGGTCCAGCTGGTCGCGGCACAGTCGATGGG
ACGCAGCAAGGAGTCCATCCAAGGCGAAAGCGAAAACAGTCCCGACCCTG
CGCTGACGGTCGCGACC
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