mRNA_E_fasciculatus_S2_contig7612.15779.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z4_9PHAE) HSP 1 Score: 303 bits (775), Expect = 3.270e-100 Identity = 190/276 (68.84%), Postives = 207/276 (75.00%), Query Frame = 1
Query: 1 MRLVDLLTALYISGSGVSSFGMTPSIRTTAVPRQSASLQVFNPPSSSSSAPNRIASAVAVARGRRRSSKLTGGERLRQRCGAQAGSSVGEEIGANNSDAQQPKADGGSSRGADGDGKPTSLVARLGTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLAVLAYGAVRTAVVSTVASAGPPSSSAAFLIRRRMVQGQQ 828
MRLV LL AL+ISGSGVSSFG+TP++RTT+ PRQS S +FNP SSSAP R A AVAVARGRRRS +L GGER ++RCGAQAGSS GE KP SLVARLGTAGLVSYGVLNGLWYS GIA+V LGPMG VPAG GIE TI+ASVKQ GKVIGLVWLGSQATKP+RLALAALTAPAADRLIA TQRRLGL KK+AVSLLVAAIFGST AFCLAV+ YG R A+VSTVA AGPP M++ QQ
Sbjct: 1 MRLVALLVALHISGSGVSSFGLTPAMRTTS-PRQSLSRYLFNP---SSSAPKRTADAVAVARGRRRS-RLVGGERPQRRCGAQAGSSSGEXX-XXXXXXXXXXXXXXXXXXXXXXXKPISLVARLGTAGLVSYGVLNGLWYSGGIAFVMLGPMGAVPAGSGIEGTIAASVKQLGKVIGLVWLGSQATKPLRLALAALTAPAADRLIASTQRRLGLNKKDAVSLLVAAIFGSTAAFCLAVVTYGVARAAMVSTVAPAGPPXXXXXXXXXXXMMKDQQ 270
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS32_ECTSI) HSP 1 Score: 223 bits (567), Expect = 1.600e-70 Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 1
Query: 403 VLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLAVLAYGAVRTAVVSTVASAGPPSSSAAFLIRRRMVQGQQ 828
+LNGLWYS GIA+V LGPMG VPAG GIE TI+ASVKQ GKVIGLVWLGSQATKPVRLALA LTAPAADRLIA TQRRLGLKKKNAVSLLVA IFGST AFCLAVLAYG R A+VSTVASAG PSSSAAFLIRRRM++GQQ
Sbjct: 1 MLNGLWYSGGIAFVMLGPMGAVPAGSGIEGTIAASVKQLGKVIGLVWLGSQATKPVRLALAVLTAPAADRLIASTQRRLGLKKKNAVSLLVAVIFGSTAAFCLAVLAYGVARAAMVSTVASAGSPSSSAAFLIRRRMMEGQQ 142
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Hypothetical (protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TLL4_9VIRI) HSP 1 Score: 68.9 bits (167), Expect = 6.200e-11 Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 355 TSLVARL---GTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLAV 717
T+++ +L G AG++SYGV N +Y +A+ M +PAG GI +A ++ +V+ +VW+GSQATKP+R A AP ADRL+ T RLG+ + A + + A+ F + A AV
Sbjct: 17 TTMLDKLKEYGMAGVLSYGVFNTTYYI--VAFCVGARMVDLPAGAGI----AAVCRKLAEVLAVVWVGSQATKPLRAGAALTLAPFADRLLGATASRLGMGRAGAFAAITASCFAAAAAVFAAV 134
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FS21_VITBC) HSP 1 Score: 64.7 bits (156), Expect = 4.040e-8 Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 364 VARLGTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKN 657
+ G AG++SYGVLN L+Y+ +A M P+ ++ + ++F KV LVW GSQ TK +R A+A + AP D+++A TQRRL LK +
Sbjct: 129 IRSYGLAGMLSYGVLNALYYTVAVALAWCCRM-TCPSMA--APSLRCATQRFVKVFVLVWAGSQVTKGLRAAMAVMIAPFVDKVLAATQRRLRLKTRE 223
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NR54_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 6.200e-8 Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 364 VARLGTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLA 714
+ R G +G+++YG+LN L+YSC +V + + VP+G G+ + ++F +V L W GSQ TK R A A AP DRL+ Q RLGL K L AI G+ V LA
Sbjct: 103 LQRYGLSGVLAYGLLNTLYYSCMFLFVWV-YVAKVPSGLGLP----GAARKFLEVFALTWGGSQVTKVARAAGALALAPVVDRLLDGAQARLGLATKRGAFL---AIVGACVGAALA 211
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVJ9_9ARCH) HSP 1 Score: 58.5 bits (140), Expect = 2.990e-7 Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 373 LGTAGLVSYGVLNGLWYSC---------GIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKN 657
+G AG+++YG LN L+Y+ GI + P+ V P + +S +V + GKVI VWLGSQATK +RLA A AP DR I + ++ L +
Sbjct: 1 MGQAGILAYGSLNCLYYTIATAIVWSLTGIKLASAPPVIVTP-----PQRLSVAVGRVGKVIAGVWLGSQATKVLRLAGAVALAPLLDRAIDYVHKKFDLPSRG 99
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C0T1_9VIRI) HSP 1 Score: 54.7 bits (130), Expect = 1.870e-5 Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 343 DGKPTSLVARL---GTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVS-LLVAAIFGS 693
D + VA+L G AG+ SYG+ N ++Y + + G V G + +++ +V+ +VW+GSQATKP+R A + AP DR +A Q L L K A LL A+ FG+
Sbjct: 62 DAEEKGAVAQLRAYGLAGVASYGLWNTIYYLLAFSAAWMAMSGSVQGQG-----LQVVLRKMPQVLAVVWVGSQATKPLRAGGALMLAPLMDRGLARAQAALRLPSKLAAFWLLTASCFGA 177
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RNA2_SELML) HSP 1 Score: 52.0 bits (123), Expect = 5.780e-5 Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 358 SLVARLGTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLA 714
S + R GTAG++SYGV N ++Y + V P+ GG+ +A+ ++F ++ +VW GSQ TK +R A A AP D+ + + L + + FG+ VA C A
Sbjct: 3 SQLRRYGTAGILSYGVFNTMYYLGTFLFFWFY---VAPSPGGLGY--AAAAQRFVRLFAMVWAGSQVTKLLRAAAALALAPLVDKCLNWFTSTLHFESREKA-------FGTLVAGCFA 109
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Match: uncharacterized (protein LOC9650887 isoform X3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CA55A) HSP 1 Score: 53.1 bits (126), Expect = 8.580e-5 Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 358 SLVARLGTAGLVSYGVLNGLWYSCGIAYVTLGPMGVVPAGGGIERTISASVKQFGKVIGLVWLGSQATKPVRLALAALTAPAADRLIAFTQRRLGLKKKNAVSLLVAAIFGSTVAFCLA 714
S + R GTAG++SYGV N ++Y + V P+ GG+ +A+ ++F K+ +VW GSQ TK +R A A AP D+ + + L + + FG+ VA C A
Sbjct: 87 SQLRRYGTAGILSYGVFNTMYYLGTFLFFWFY---VAPSPGGLGY--AAAAQRFVKLFAMVWAGSQVTKLLRAAAALALAPLVDKCLNWFTSTLHFESREKA-------FGTLVAGCFA 193 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7612.15779.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7612.15779.1 >prot_E_fasciculatus_S2_contig7612.15779.1 ID=prot_E_fasciculatus_S2_contig7612.15779.1|Name=mRNA_E_fasciculatus_S2_contig7612.15779.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=277bp MRLVDLLTALYISGSGVSSFGMTPSIRTTAVPRQSASLQVFNPPSSSSSAback to top mRNA from alignment at E_fasciculatus_S2_contig7612:725..3925+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7612.15779.1 ID=mRNA_E_fasciculatus_S2_contig7612.15779.1|Name=mRNA_E_fasciculatus_S2_contig7612.15779.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7612:725..3925+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7612:725..3925+ >mRNA_E_fasciculatus_S2_contig7612.15779.1 ID=mRNA_E_fasciculatus_S2_contig7612.15779.1|Name=mRNA_E_fasciculatus_S2_contig7612.15779.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7612:725..3925+ (Ectocarpus fasciculatus EfasUO2)back to top |