mRNA_E_fasciculatus_S2_contig7602.15772.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7602.15772.1
Unique NamemRNA_E_fasciculatus_S2_contig7602.15772.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7602.15772.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.870e-116
Identity = 217/225 (96.44%), Postives = 219/225 (97.33%), Query Frame = 1 
Query:  151 MASPETTLADLHRKREDEVERRRTDPATDLHLWTFWRKNPLGDGGTLPIDEPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQWVRLTREMGVKKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEAYREHGKGQAKXXXXXXXXXXX-PASKRAVPEVGLTLGGGDWDDGXXXXXXXXXXXXXXXSDMRF 822
            MASPETTLADL RKREDEVERRRTDP TDLHLWTFWRKNPLGDGGTLPIDEPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPA+RVRAIKHNWGKHQWVRLTREMG+KKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEAYREHGKGQAK   XXXXXXXX PASKRAVPEVGLTLGGGDWDDGXXXXXXXXXXXXXXXSDMRF
Sbjct: 2264 MASPETTLADLLRKREDEVERRRTDPVTDLHLWTFWRKNPLGDGGTLPIDEPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPATRVRAIKHNWGKHQWVRLTREMGIKKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEAYREHGKGQAKTKKXXXXXXXXXPASKRAVPEVGLTLGGGDWDDGXXXXXXXXXXXXXXXSDMRF 2488
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BLAST of mRNA_E_fasciculatus_S2_contig7602.15772.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC1_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 3.310e-110
Identity = 213/228 (93.42%), Postives = 216/228 (94.74%), Query Frame = 1 
Query:  151 MASPETTLADLHRKREDEVERRRTDPATDLHLWTFWRKNPLGDGGTLPIDEPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQWVRLTREMGVKKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEA----YREHGKGQAKXXXXXXXXXXXPASKRAVPEVGLTLGGGDWDDGXXXXXXXXXXXXXXXSDMRF 822
            MASPETTLADL RKREDEVERRRTDP TDLHLWTF RKNPLGDGGTLPIDEPEWPGPLKEVIVE+VSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQWVRLTREMG+KKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEA    YREHGK    XXXXXXXXXXXPASKRA+PEVGLTLGG DWDDGXXXXXXXXXXXXXXXSDMRF
Sbjct: 1012 MASPETTLADLLRKREDEVERRRTDPVTDLHLWTFCRKNPLGDGGTLPIDEPEWPGPLKEVIVENVSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQWVRLTREMGIKKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEASASAYREHGKXXXXXXXXXXXXXXXPASKRAMPEVGLTLGG-DWDDGXXXXXXXXXXXXXXXSDMRF 1238
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7602.15772.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Ubiquitin1.870e-11696.44carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus... [more]
Uncharacterized3.310e-11093.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7602contigE_fasciculatus_S2_contig7602:4279..7412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score384.4
Seed ortholog evalue3.6e-104
Seed eggNOG ortholog2880.D7FSX8
Model size1191
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
Cds size675
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7602.15772.1prot_E_fasciculatus_S2_contig7602.15772.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7602 4429..7046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842422.674079-UTR-E_fasciculatus_S2_contig7602:4278..44281696842422.674079-UTR-E_fasciculatus_S2_contig7602:4278..4428Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7602 4279..4428 +
1696842422.7665775-UTR-E_fasciculatus_S2_contig7602:7046..74121696842422.7665775-UTR-E_fasciculatus_S2_contig7602:7046..7412Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7602 7047..7412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842422.6911132-CDS-E_fasciculatus_S2_contig7602:4428..46081696842422.6911132-CDS-E_fasciculatus_S2_contig7602:4428..4608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7602 4429..4608 +
1696842422.7022517-CDS-E_fasciculatus_S2_contig7602:5029..51851696842422.7022517-CDS-E_fasciculatus_S2_contig7602:5029..5185Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7602 5030..5185 +
1696842422.7205591-CDS-E_fasciculatus_S2_contig7602:5788..59321696842422.7205591-CDS-E_fasciculatus_S2_contig7602:5788..5932Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7602 5789..5932 +
1696842422.7328103-CDS-E_fasciculatus_S2_contig7602:6516..66391696842422.7328103-CDS-E_fasciculatus_S2_contig7602:6516..6639Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7602 6517..6639 +
1696842422.7508924-CDS-E_fasciculatus_S2_contig7602:6974..70461696842422.7508924-CDS-E_fasciculatus_S2_contig7602:6974..7046Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7602 6975..7046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7602.15772.1

>prot_E_fasciculatus_S2_contig7602.15772.1 ID=prot_E_fasciculatus_S2_contig7602.15772.1|Name=mRNA_E_fasciculatus_S2_contig7602.15772.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MASPETTLADLHRKREDEVERRRTDPATDLHLWTFWRKNPLGDGGTLPID
EPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQ
WVRLTREMGVKKMKKGKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESG
EADLARADDEAYREHGKGQAKAKKDKRKKKKKPASKRAVPEVGLTLGGGD
WDDGDDDEESDESDESDDLSDMRF*
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mRNA from alignment at E_fasciculatus_S2_contig7602:4279..7412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7602.15772.1 ID=mRNA_E_fasciculatus_S2_contig7602.15772.1|Name=mRNA_E_fasciculatus_S2_contig7602.15772.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3134bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7602:4279..7412+ (Ectocarpus fasciculatus EfasUO2)
GGCGCTGGCAAGAAGTCGGCCGCATCGTCCTCCACCGGTCAGCCAGGGTC
CGCGGGGACAGGAGCAGGCGCTCCAGAAGCAGCAGGCGCATCTTCAGCAC
CAGCACCAGCCTCCGGGGGCCCCGCCGCTGCTGCTGCTACTGCTGCTGCG
ATGGCTTCGCCAGAGACAACCCTTGCCGACCTTCACCGCAAGAGGGAGGA
CGAGGTGGAACGGCGACGCACGGACCCGGCGACCGACCTGCACCTCTGGA
CGTTCTGGCGCAAGAACCCGCTTGGGGACGGGGGCACGCTGCCGATCGAC
GAGCCGGAGTGGCCAGGGCCTCTCAAGGAGGTAGGTAATGATGAGCCCGC
GCTGGGTTGATTTTGTAGACGTTTGGCGGATTTTGAGAAGGGCAGGTAAG
CTATACAATAGAGGCCTTGGTTTTATAGAGAAGACTGTGCTTGGCGTGTC
TCGCGGCATGGGATGGAGGTTGTAGGCTGAATTCAGCGACAGGTGGTCAT
CGGTGATGTTGTTGTTGCCCGTGGCTGGTCGTCAATGTTTTGGTGTGCGT
GGTGGAGATGCTGGCGGTGTTGGCATACGCTGCCATTGTTGTCAAAGACA
GTTGAAGAAACACCCACTTCCAATACTATTAGCAAGTAGAGTCCGCTTCA
TCTCGTCAGCAAAGAGAGGTTTGCGGGACCAATTAGCTCTCCACATCAAG
TATCCACCAAGTAGGACTAAAATCAAGCGTATTGCCGCTTGAAACCGCTA
GGTGATCGTGGAGGACGTTTCGCAGCCTACCCTCGACAACCTCCACGAGG
CCCTGGGGAAGGCCTACGGGATTCCGGCGAGTCGCGTGAGGGCTATCAAG
CACAACTGGGGCAAGCACCAGTGGGTGCGCCTCACGCGCGAGATGGGGGT
CAAGAAGGTGATGAAACACGAAAGTTGACGGCGTTATGTCTTGTATTTAC
CCGAGGAGTGGACGATGCATGTCGTGGTGTATTATGGCACTGCAGAAACG
TATGTTGCTGATAACGCACATACAGCACATACAGCACATCGCGAGGTGAC
ACGATTTCTCCCGCCTCTCATGGCCTCTCATGGCCTCTCATGGCCTCTCA
TGGCCTCTCATGGCCTCTCATGGGGGTCGGTGTTTGAGAAAGACGAGGAG
GCGGACTGATATTTATGTTTGATCGTGTAACTACATGGGCCGATCCCCGA
AGTACGACAAGAACTCGACTGAAGAGCTAGCGTACATACCGTACATGGCG
TCATATAAGGCATTGGTCATGTCATGTCATGGCTCATGTCATGTCATGAC
GTGACGTGATAGGGTGACGAGGGTTCGACCTATCTATCAACTAATCAACT
AACTCGTGGGCTCTCTGCTGCCTATCTCTACCTTCATTTCGCTCTCGGTG
CAACTCATCTCTATGCTCTATCTTCTGCTGGTGGCAACCTTGCAGTTGCG
ACTGATCTCTAACGTTGGTAGTGCTCGCCTCTCATTGTTTTTTTATGAAC
CTGTTCCCAGATGAAGAAGGGCAAGAAGGGCAAGCGTCTGGTCACCAACC
TCCGAGAGGCACCGTACTCGTTTAAGGACGGGGATGTCGTGGCAGTGGTG
GACAAGATGGAGGACGAGTCGGGAGAAGCCGACCTCGCGAGGGCAGACGA
CGAGGTGATTGTTAAAAGGGCTAGAACTGGGCTTAGCTTAGGATGAGGAT
AGCCTCAGGCTTGGGGTAGACAAGTGCCACTGACATGGATAAATGACGAC
GGGAGTGTTGTAGGGCTAGAGTTAGACTTAGGCTCAAGCTTAGGGCAAAG
AAGTTCTGACTAAGGACAGGCAGAACTCATCCAGAGGGTAGATGATGCGG
GGAGTGTTGGAGGGCTAGAAGGGTTGGGCGTAGGGAGTAGCGACGTCATA
GGTGTCGATCGTGGCGTGCGCTGCTGTGTGTAGTATCGATGGGCGTTCTT
GAATCTTGAGTCAGGGTCGTTCTTGGATCTTGAGTGAGGGTCGGCTGTGA
GCTGTGAGGCCGGTAGCGCATGCATGCCACAAAACATGTGCCGTCGTGAT
AGCTTTGCAGCGAAGCGAGTCTTCTACCGGCATGCGGTGATCTCGATCTG
TTGATACTGTTGCACCGATCCCCGGTTGGCGATATCCCTGCATTGAAAAG
AAATGGGATTGGGTTATGGAGGACCCGATTTGGTAATCCATCATTTGACT
ATGATCGGCACACCTTCGCGCTTGAATGTCTGGTGCAGGCGTATCGAGAG
CATGGAAAGGGTCAGGCGAAGGCAAAGAAGGACAAGAGGAAGAAGAAGAA
GAAGCCAGCGTCGAAGCGAGCCGTGCCGGAGGTCGGGCTGACCTTGGGAG
GAGGAGACTGGGTGAGCAGCAACCAGACGCAACATCGTTTGGACTGACAC
ACACGTTCATTTTTTTTTTGTTTTCGGCGACCCACATTTACCAAACGGTA
TATATTAATTGACTGCCATTGATTTTCTATATGATTGGGTACTCTTGATG
TATGTTGATGTGTGGCTTCATCGCTGTAATTTTTCCTGTCTACGCTGTCG
GTTATTTCTAATGTAATGAACGAACTCCGCATGTGTCCTCTTTCCTTCCC
GGTTTAGTCTAGACTAGACTTTAATTTTGTCGTGGCGAATTATTACGCTA
TTGTATGTTCTTTTTGTTTTTTTTCCTACTTGTACTTGTACTGTAGGACG
ATGGCGACGACGACGAAGAGAGCGACGAGAGCGACGAAAGCGACGACTTG
AGCGACATGCGCTTCTGACCAAGCCCCGCCCACCATCATCAGAGGCATAC
CCTATCTTGACGCTTGGTTGTTCAAGACTCAAGACGCCATATTTTCCAAG
CGGAAGGACAAGACGTGACCTTGAATTGAACCTTCCGTGGAACATCAGAT
CCGGTTTGATAACCACGAGGAAATGCCACCCCACAGATGCCTCCGTAGAT
AGGAAGGAAGGTTCCGCCATGTTACCAAAGACTAAACAATAGCCCGTGAG
GATGTCGGGAGTGCCCTCCGGGGGTCGGCGCTGCGCGAGGGTGTGTCGGT
GCATTATCACATTAGATTTATCACATTAGGATGAGGAACGTCGCGGTGGT
CTGGAGGAACGTGGTGCCGAAGAGTCGCACGCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7602:4279..7412+

>mRNA_E_fasciculatus_S2_contig7602.15772.1 ID=mRNA_E_fasciculatus_S2_contig7602.15772.1|Name=mRNA_E_fasciculatus_S2_contig7602.15772.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7602:4279..7412+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCGCCAGAGACAACCCTTGCCGACCTTCACCGCAAGAGGGAGGA
CGAGGTGGAACGGCGACGCACGGACCCGGCGACCGACCTGCACCTCTGGA
CGTTCTGGCGCAAGAACCCGCTTGGGGACGGGGGCACGCTGCCGATCGAC
GAGCCGGAGTGGCCAGGGCCTCTCAAGGAGGTGATCGTGGAGGACGTTTC
GCAGCCTACCCTCGACAACCTCCACGAGGCCCTGGGGAAGGCCTACGGGA
TTCCGGCGAGTCGCGTGAGGGCTATCAAGCACAACTGGGGCAAGCACCAG
TGGGTGCGCCTCACGCGCGAGATGGGGGTCAAGAAGATGAAGAAGGGCAA
GAAGGGCAAGCGTCTGGTCACCAACCTCCGAGAGGCACCGTACTCGTTTA
AGGACGGGGATGTCGTGGCAGTGGTGGACAAGATGGAGGACGAGTCGGGA
GAAGCCGACCTCGCGAGGGCAGACGACGAGGCGTATCGAGAGCATGGAAA
GGGTCAGGCGAAGGCAAAGAAGGACAAGAGGAAGAAGAAGAAGAAGCCAG
CGTCGAAGCGAGCCGTGCCGGAGGTCGGGCTGACCTTGGGAGGAGGAGAC
TGGGACGATGGCGACGACGACGAAGAGAGCGACGAGAGCGACGAAAGCGA
CGACTTGAGCGACATGCGCTTCTGA
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